These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6099#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [GCGAGCGGACATGNCAGCATCGCAGCCAAGCCGTGCTACAACTCTGCATTCAATATACANTTTCNACNGCAAGATTCAANTCAGTCTGNGTGANCGNGAGAGAACATCATGATGGGTAAGCTGTTGCCTGCTTCGGCGTTCGCGGAGTCGGAGCCGTCGTGTCGCAGGTGGCAACGTCGGCGGCGCACGGCGAGGACTCGCCGTACTTCGCCGGGTGGAAGGCCTACGACGAGGACCCCTACCACGTCGTCGATAACCCCGACGGCGTCATACAGATGGGCCTCGTCGAGAACCAGGTCTCCT] [+] EMBL OSS11722A [GCGAGCGGACATGNCAGCATCGCAGCCAAGCCGTGCTACAACTCTGCATTCAATATACANTTTCNACNGCAAGATTCAANTCAGTCTGNGTGANCGNGAGAGAACATCATGATGGGTAAGCTGTTGCCTGCTTCGGCGTTCGCGGAGTCGGAGCCGTCGTGTCGCAGGTGGCAACGTCGGCGGCGCACGGCGAGGACTCGCCGTACTTCGCCGGGTGGAAGGCCTACGACGAGGACCCCTACCACGTCGTCGATAACCCCGACGGCGTCATACAGATGGGCCTCGTCGAGAACCAGGTCTCCT] consensusID : consensus_6099#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 228 fasta sequence [GCTTGATTGCCTCTTGTACTGCAGTGTTGCTTCCTACACTGCCATTGCATATAAATTTTGCACTGCAAGATTAATTCAGTCTGAGAGAACGAGAGAGAACATCATGGGTGGCAAGCTGTTGCCTGCTGCGGCGTTCGCGGNGTCGGGCCGCCGCTGTCGCAGGTGGCAACGTCGGCGGCGCACGGCGAGGACTCGCCGTACTTCGCCGGGTGGAAGGCCTACGACGAG] [+] EMBL OSS11757A [GCTTGATTGCCTCTTGTACTGCAGTGTTGCTTCCTACACTGCCATTGCATATAAATTTTGCACTGCAAGATTAATTCAGTCTGAGAGAACGAGAGAGAACATCATGGGTGGCAAGCTGTTGCCTGCTGCGGCGTTCGCGGNGTCGGGCCGCCGCTGTCGCAGGTGGCAACGTCGGCGGCGCACGGCGAGGACTCGCCGTACTTCGCCGGGTGGAAGGCCTACGACGAG] [+] EMBL OSS11758A [GCTTGATTGCCTCTTGTACTGCAGTGTTGCTTCCTACACTGCCATTGCATATAAATTTTGCACTGCAAGATTAATTCAGTCTGAGAGAACGAGAGAGAACATCATGGGTGGCAAGCTGTTGCCTGCTGCGGCGTTCGCCG GTCGGGCCGCCGCTGTCGCAGGTGGCAACGTCGGCGGCGCACGGCGAGGACTCGCCGTACTTCGCCGGGTGGAAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6099#0 GCGAGCGGACATGNCAGCATCGCAGCCAAGCCGTGCTACAACTCTGCATTCAATATACAN 60 consensus_6099#1 GCTTGATTGCCT-CTTGTACTGCAGTGTTGCT-TCCTACACTGC--CATTGCATATAAAT 56 ** * * * * * **** ** * ***** * **** ***** * consensus_6099#0 TTTCNACNGCAAGATTCAANTCAGTCTGNGTGANCGNGAGAGAACATCATGATGGGTAAG 120 consensus_6099#1 TTTGCACTGCAAGATT-AATTCAGTCTGAGAGAACGAGAGAGAACATCATGGGTGGCAAG 115 *** ** ******** ** ******** * ** ** ************** ** *** consensus_6099#0 CTGTTGCCTGCTTCGGCGTTCGCGGAGTCGGAGCCGTCG-TGTCGCAGGTGGCAACGTCG 179 consensus_6099#1 CTGTTGCCTGCTGCGGCGTTCGCGGNGTCGG-GCCGCCGCTGTCGCAGGTGGCAACGTCG 174 ************ ************ ***** **** ** ******************** consensus_6099#0 GCGGCGCACGGCGAGGACTCGCCGTACTTCGCCGGGTGGAAGGCCTACGACGAGGACCCC 239 consensus_6099#1 GCGGCGCACGGCGAGGACTCGCCGTACTTCGCCGGGTGGAAGGCCTACGACGAG------ 228 ****************************************************** consensus_6099#0 TACCACGTCGTCGATAACCCCGACGGCGTCATACAGATGGGCCTCGTCGAGAACCAGGTC 299 consensus_6099#1 ------------------------------------------------------------ consensus_6099#0 TCCT 303 consensus_6099#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||