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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6104#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1432 fasta sequence
[CACCATCCATGTCCAAGCAAATGATCATAATGAGGTGAGCTAATGCAAATGAGTATCTTGAAGATAATTATAGTAATGAGATTTTCTGGCTTAACTTTTCTTTATGCAATATTTGCATGGTGTTACTTCCACACATGTTATTTCAGAAGAGACTGTCTTTTATATTCTTTATTGATATGAAAGTTTTTCCAGCGAGCTTTTGAGAGGATTATACTGCAGGTTTTCTGGCTTATTTTTTCCCATATGTACTATCTACTGTATGTGTTGTTTCAAAATAGAGTAGCTGTTTTTTGCAAGCTTATAGAAGGATAGTTGCTCTTTACCAAGATCCTGGCTTCATGGTGTCATTAATTTATGTTTTGTCATATAATTGGTTCGTGAGTTATATATTTCACGTGAACTGCGGTAGGTTATTCCCATATTGATTTATATACATGCATAATTGCATTAGCTTATTTTGAGTTCTTGTTGATAGTGTATCTCAGGATTAGCAGAATGTCAGTATACTATTGCTGTTCTTATCAGCTTTTATTCAAGGGGAACTGGATCTTTCTCATGCTGTTTCAATGTTTTCAATCGATGTACTGATCTTCTTTTTTATTTTCATATTGTTAATTTAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGACAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCGAGGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTTTTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATGGTGGACCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAGAAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAGGCGCCATTGACGCC-AACCAGACATATGCCCAACCTATCATCCAAAGGTCTAGCTTCAAGGAGATCTACCAAAGATGGCTGGAAAGACTAATGACAATATACTCCCTTTTCATGGATTGGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATATATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTGATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCATTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAGAGCTTCGCTTCACTTGTGCATGGATTCCAACTGAGGCTCCAACTTCGTCTTGCAATCATGAAAGTTGGATGAGAGATCCACCGAACAATGAACAAATTGTTGAGATGAATGCTATA]
[+] EMBL AK066560 [CACCATCCATGTCCAAGCAAATGATCATAATGAGGTGAGCTAATGCAAATGAGTATCTTGAAGATAATTATAGTAATGAGATTTTCTGGCTTAACTTTTCTTTATGCAATATTTGCATGGTGTTACTTCCACACATGTTATTTCAGAAGAGACTGTCTTTTATATTCTTTATTGATATGAAAGTTTTTCCAGCGAGCTTTTGAGAGGATTATACTGCAGGTTTTCTGGCTTATTTTTTCCCATATGTACTATCTACTGTATGTGTTGTTTCAAAATAGAGTAGCTGTTTTTTGCAAGCTTATAGAAGGATAGTTGCTCTTTACCAAGATCCTGGCTTCATGGTGTCATTAATTTATGTTTTGTCATATAATTGGTTCGTGAGTTATATATTTCACGTGAACTGCGGTAGGTTATTCCCATATTGATTTATATACATGCATAATTGCATTAGCTTATTTTGAGTTCTTGTTGATAGTGTATCTCAGGATTAGCAGAATGTCAGTATACTATTGCTGTTCTTATCAGCTTTTATTCAAGGGGAACTGGATCTTTCTCATGCTGTTTCAATGTTTTCAATCGATGTACTGATCTTCTTTTTTATTTTCATATTGTTAATTTAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGACAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCGAGGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTTTTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATGGTGGACCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAGAAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAGGCGCCATTGACGCC AACCAGACATATGCCCAACCTATCATCCAAAGGTCTAGCTTCAAGGAGATCTACCAAAGATGGCTGGAAAGACTAATGACAATATACTCCCTTTTCATGGATTGGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATATATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTGATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCATTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAGAGCTTCGCTTCACTTGTGCATGGATTCCAACTGAGGCTCCAACTTCGTCTTGCAATCATGAAAGTTGGATGAGAGATCCACCGAACAATGAACAAATTGTTGAGATGAATGCTATA]
[-] EMBL CB685105 [ AAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAGGTGCCATTGACGCCTAACCAGACATATGCCCAGCCTATCATCCAAAGGTCTAGCTTCAAGGAGATCTACCAAAGATGGCTGGAAAGAGTAATGACAATATACTCCCTTTTCATGGATTGGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATATGAAAGAATATATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTCCCTTTCGATTAATTTGTGGAGTGTATAAGAAGAGATTTCAGGGGCTAAGATATAATGGTTCAGTTTGTGCATTGGTTCACC ]
consensusID : consensus_6104#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 735 fasta sequence
[CACCATCCATGTCCAAGCAAATGATCATAATGAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGACAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCAAGGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTTTTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATGGTGGACCCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAGAAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGANGCGCCATTTGACGCCNACCAGACATATGCCCAACCTATCATTCCAAAGGTCTAGCTTCAAGGAGATCTACCCAAAGATGGCTGGNAAGACTAATGACAATATACTCCCTTTTCATGGATTGGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATATATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTAATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCATTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAGA]
[+] EMBL CA765617 [CACCATCCATGTCCAAGCAAATGATCATAATGAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGACAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCAAGGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTTTTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATGGTGGACCCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAGAAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGANGCGCCATTTGACGCCNACCAGACATATGCCCAACCTATCATTCCAAAGGTCTAGCTTCAAGGAGATCTACCCAAAGATGGCTGGNAAGACTAATGACAATATA ]
[+] EMBL CB685104 [ aatgccttTAAAGAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGACAATAATTCTTAGAGTTGCTGAACAGACCTGCAATATTAGCATTCACCGAGCAATTGCGAGGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTTTTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATGGTGGA CCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAGAAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAGGCGCCA TTGACGCCAACCAGACATATGCCCAACCTATCA TCCAAAGGTCTAGCTTCAAGGAGATCTA CCAAAGATGGCTGGAAAGACTAATGACAATATACTCCCTTTTCATGGATTGGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATATATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTAATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCATTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6104#0 CACCATCCATGTCCAAGCAAATGATCATAATGAGGTGAGCTAATGCAAATGAGTATCTTG 60
consensus_6104#1 ------------------------------------------------------------
consensus_6104#0 AAGATAATTATAGTAATGAGATTTTCTGGCTTAACTTTTCTTTATGCAATATTTGCATGG 120
consensus_6104#1 ------------------------------------------------------------
consensus_6104#0 TGTTACTTCCACACATGTTATTTCAGAAGAGACTGTCTTTTATATTCTTTATTGATATGA 180
consensus_6104#1 ------------------------------------------------------------
consensus_6104#0 AAGTTTTTCCAGCGAGCTTTTGAGAGGATTATACTGCAGGTTTTCTGGCTTATTTTTTCC 240
consensus_6104#1 ------------------------------------------------------------
consensus_6104#0 CATATGTACTATCTACTGTATGTGTTGTTTCAAAATAGAGTAGCTGTTTTTTGCAAGCTT 300
consensus_6104#1 ------------------------------------------------------------
consensus_6104#0 ATAGAAGGATAGTTGCTCTTTACCAAGATCCTGGCTTCATGGTGTCATTAATTTATGTTT 360
consensus_6104#1 ------------------------------------------------------------
consensus_6104#0 TGTCATATAATTGGTTCGTGAGTTATATATTTCACGTGAACTGCGGTAGGTTATTCCCAT 420
consensus_6104#1 ------------------------------------------------------------
consensus_6104#0 ATTGATTTATATACATGCATAATTGCATTAGCTTATTTTGAGTTCTTGTTGATAGTGTAT 480
consensus_6104#1 ------------------------------------------------------------
consensus_6104#0 CTCAGGATTAGCAGAATGTCAGTATACTATTGCTGTTCTTATCAGCTTTTATTCAAGGGG 540
consensus_6104#1 ------------------------------------------------------------
consensus_6104#0 AACTGGATCTTTCTCATGCTGTTTCAATGTTTTCAATCGATGTACTGATCTTCTTTTTTA 600
consensus_6104#1 ---------------------------------------------CACCATCCATGTCCA 15
* * * * *
consensus_6104#0 TTTTCATATTGTTAATTTAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGA 660
consensus_6104#1 AGCAAATGATCATAATG-AGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGA 74
** * **** ******************************************
consensus_6104#0 CAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCGA 720
consensus_6104#1 CAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCAA 134
********************************************************** *
consensus_6104#0 GGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTT 780
consensus_6104#1 GGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTT 194
************************************************************
consensus_6104#0 TTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATG 840
consensus_6104#1 TTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATG 254
************************************************************
consensus_6104#0 GTGGACC-TGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAG 899
consensus_6104#1 GTGGACCCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAG 314
******* ****************************************************
consensus_6104#0 AAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAG 959
consensus_6104#1 AAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAN 374
***********************************************************
consensus_6104#0 GCGCCATT-GACGCCAACCAGACATATGCCCAACCTATCAT-CCAAAGGTCTAGCTTCAA 1017
consensus_6104#1 GCGCCATTTGACGCCNACCAGACATATGCCCAACCTATCATTCCAAAGGTCTAGCTTCAA 434
******** ****** ************************* ******************
consensus_6104#0 GGAGATCTACC-AAAGATGGCTGGAAAGACTAATGACAATATACTCCCTTTTCATGGATT 1076
consensus_6104#1 GGAGATCTACCCAAAGATGGCTGGNAAGACTAATGACAATATACTCCCTTTTCATGGATT 494
*********** ************ ***********************************
consensus_6104#0 GGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATA 1136
consensus_6104#1 GGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATA 554
************************************************************
consensus_6104#0 TATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTG 1196
consensus_6104#1 TATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTA 614
***********************************************************
consensus_6104#0 ATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCA 1256
consensus_6104#1 ATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCA 674
************************************************************
consensus_6104#0 TTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAG 1316
consensus_6104#1 TTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAG 734
************************************************************
consensus_6104#0 AGCTTCGCTTCACTTGTGCATGGATTCCAACTGAGGCTCCAACTTCGTCTTGCAATCATG 1376
consensus_6104#1 A----------------------------------------------------------- 735
*
consensus_6104#0 AAAGTTGGATGAGAGATCCACCGAACAATGAACAAATTGTTGAGATGAATGCTATA 1432
consensus_6104#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||