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Oryza sativa
cluster # 6106 cluster # 6106       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6106#0 length = 1547 sequences # 4  

consensusID : consensus_6106#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1547
fasta sequence
                              [CAAACCAAGCAAACTCCATCTCATCGTCGCTCCGGTCCCCACCCTACTCCACCAACTCCCGCCGCCGCCGCCGCCGGCGGTCGTGCGCTCCGGGCCGCAGCCATGCACGGCCGCCGCCACCTCGCCGCCTCCCTGGCCCGCGCCCTGACCTACGCCCCCTCCCGCTCCATCTCCTCCACCCCGTCGCTCCTCCAAACCCTCGACCCGTCCACGCCCTCCCCCGCGGCCGCCCCGCCCACCGCGGGGCGGCTCGCGGAGCTCCGGCAGCGGCTGCAGGCGGACGCGCCGTCGCTGGGGGACTTCACGTACTCGGTGGAGGTGGGGACGCGGAAGAAGCCGCTGCCCAAGCCCAAGTGGATGAAGGAGACGATACCAGGCGGCGCCAAGTACGCGGGGATCAAGGCCAAGCTGCGGGAGCTGAAGCTGCACACCGTCTGCGAGGAGGCGCGCTGCCCCAACCTCGGCGAGTGCTGGTCCGGCGGCGAGACCGGCACCGCCACCGCCACCATCATGATCCTCGGGGACACCTGCACGCGCGGCTGCAGGTTTTGTAATGTCAAGACCTCGCGAACTCCTCCGCCACCAGATCCTGATGAACCTTCTAATGTTGCTCAAGCTATTGCCTCGTGGGGCCTGGAGTATATTGTCATCACAAGTGTTGACCGCGATGATTTACCTGATCAAGGGAGTGGTCACTTTGCTGAAACAGTTCAAAAGCTAAAGGTGTTGAAGCCAGAAATGCTTATTGAAGCACTTGTTCCTGATTTCCGTGGAGACCCAGCATGTGTAGAGAAGGTTGCTACTTCTGGGTTGCATGTTTTCGCCCACAACATTGAAACAGTTGAAGAGCTGCAAAGAAATGTGAGAGATCATCGTGCGAACTTCAAGCAATCAATAGATGTCCTGAAATTGGCAAAAGAGTATGCTCCAGCTGGTACCCTCACAAAGACATCAATCATGCTGGGTTGTGGAGAAACGCCTGATCAGGTTATCAGCACGACGGAAAAGGTTAGGGCTGCTGGTGTTGATGTAATGACATTTGGTCAGTACATGAGACCATCTAAACGTCATATGCCTGTTTCCGAGTATGTTACTCCCGAAGCCTTTGAGAGGTATCGATCCCTTGGTGTTGACATGGGCTTCCGTTATGTGGCTTCGGGCCCAATGGTTCGATCTTCCTACAAAGCTGGTGAGTTCTACATAAAAGCCATGATTGAAGCTGACAGAGCAAAAGCTACGACTGCAATATAGTTGATCCTCTTTCCTTGACATTGTTACACTGCAAAT-AAAGTCGCAGGATTCTAAAAGTTCTTATTGGAAAAACATGTTCATTTTTGTCATAATTGCAATCGTGCTCCTTTCAACTTCTCACTGCCCCTTGTACCATTTCAACATCTCCAAGCTATGTTTGAAATTGTTGCTCTCTTTTGTTTTATAATGTAAAAATCACGAGTCCCTGTGGTCCAGTTGTCAATCATTCATTCATTGCTGTAAACTTCAAC-AGTAGCAGGAAGTCAAGTCAAACTACCCACTGAAAATGTAGATAT]

[+] EMBL AK120652             [CAAACCAAGCAAACTCCATCTCATCGTCGCTCCGGTCCCCACCCTACTCCACCAACTCCCGCCGCCGCCGCCGCCGGCGGTCGTGCGCTCCGGGCCGCAGCCATGCACGGCCGCCGCCACCTCGCCGCCTCCCTGGCCCGCGCCCTGACCTACGCCCCCTCCCGCTCCATCTCCTCCACCCCGTCGCTCCTCCAAACCCTCGACCCGTCCACGCCCTCCCCCGCGGCCGCCCCGCCCACCGCGGGGCGGCTCGCGGAGCTCCGGCAGCGGCTGCAGGCGGACGCGCCGTCGCTGGGGGACTTCACGTACTCGGTGGAGGTGGGGACGCGGAAGAAGCCGCTGCCCAAGCCCAAGTGGATGAAGGAGACGATACCAGGCGGCGCCAAGTACGCGGGGATCAAGGCCAAGCTGCGGGAGCTGAAGCTGCACACCGTCTGCGAGGAGGCGCGCTGCCCCAACCTCGGCGAGTGCTGGTCCGGCGGCGAGACCGGCACCGCCACCGCCACCATCATGATCCTCGGGGACACCTGCACGCGCGGCTGCAGGTTTTGTAATGTCAAGACCTCGCGAACTCCTCCGCCACCAGATCCTGATGAACCTTCTAATGTTGCTCAAGCTATTGCCTCGTGGGGCCTGGAGTATATTGTCATCACAAGTGTTGACCGCGATGATTTACCTGATCAAGGGAGTGGTCACTTTGCTGAAACAGTTCAAAAGCTAAAGGTGTTGAAGCCAGAAATGCTTATTGAAGCACTTGTTCCTGATTTCCGTGGAGACCCAGCATGTGTAGAGAAGGTTGCTACTTCTGGGTTGCATGTTTTCGCCCACAACATTGAAACAGTTGAAGAGCTGCAAAGAAATGTGAGAGATCATCGTGCGAACTTCAAGCAATCAATAGATGTCCTGAAATTGGCAAAAGAGTATGCTCCAGCTGGTACCCTCACAAAGACATCAATCATGCTGGGTTGTGGAGAAACGCCTGATCAGGTTATCAGCACGACGGAAAAGGTTAGGGCTGCTGGTGTTGATGTAATGACATTTGGTCAGTACATGAGACCATCTAAACGTCATATGCCTGTTTCCGAGTATGTTACTCCCGAAGCCTTTGAGAGGTATCGATCCCTTGGTGTTGACATGGGCTTCCGTTATGTGGCTTCGGGCCCAATGGTTCGATCTTCCTACAAAGCTGGTGAGTTCTACATAAAAGCCATGATTGAAGCTGACAGAGCAAAAGCTACGACTGCAATATAGTTGATCCTCTTTCCTTGACATTGTTACACTGCAAAT AAAGTCGCAGGATTCTAAAAGTTCTTATTGGAAAAACATGTTCATTTTTGTCATAATTGCAATCGTGCTCCTTTCAACTTCTCACTGCCCCTTGTACCATTTCAACATCTCCAAGCTATGTTTGAAATTGTTGCTCTCTTTTGTTTTATAATGTAAAAATCACGAGTCCCTGTGGTCCAGTTGTCAATCATTCATTCATTGCTGTAAACTTCAAC AGTAGCAGGAAGTCAAGTCAAA                       ]
[+] EMBL CB642840             [                          TCGCCCCTGACCCCACCCTACTCCACCAACTCCCGCCGCCGCCGCCGCCGGCGGTCGTGCGCTCCGGGCCGCAGCCATGCACGGCCGCCGCCACCTCGCCGCCTCCCTGGCCCGCGCCCTGACCTACGCCCCCTCCCGCTCCATCTCCTCCACCCCGTCGCTCCTCCAAACCCTCGACCCGTCCACGCCCTCCCCCGCGGCCGCCCCGCCCACCGCGGGGCGGCTCGCGGAGCTCCGGCAGCGGCTGCAGGCGGACGCGCCGTCGCTGGGGGACTTCACGTACTCGGTGGAGGTGGGGACGCGGAAGAAGCCGCTGCCCAAGCCCAAGTGGATGAAGGAGACGATACCAGGCGGCGCCAAGTACGCGGGGATCAAGGCCAAGCTGCAGGAGCTGAAGCTGCACACCGTCTGCGAGGAGGCGCGCTGCCCCAACCTCAGCGAGTGCTGGTCCGGCGAGAAGACCAGCACCGCCACCGCCACCATCATGATCCTCGGGGACACCTGCACGCGCAGCTGCAGGATTTGTAATGTCAAGACCTCGCGAACTCCTCCGCCACCgcat                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB642841             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGGAGTGGTCACTTTGCTGAAACAGTTCAAAAGCTAAAGGTGTTGAAGCCAGAAATGCTTATTGAAGCACTTGTTCCTGATTTCCGTGGAGACCCAGCATGTGTAGAGAAGGTTGCTACTTCTGGGTTGCATGTTTTCGCCCACAACATTGAAACAGTTGAAGAGCTGCAAAGAAATGTGAGAGATCATCGTGCGAACTTCAAGCAATCAATAGATGTCCTGAAATTGGCAAAAGAGTATGCTCCAGCTGGTACCCTCACAAAGACATCAATCATGCTGGGTTGTGGAGAAACGCCTGATCAGGTTATCAGCACGACGGAAAAGGTTAGGGCTGCTGGTGTTGATGTAATGACATTTGGTCAGTACATGAGACCATCTAAACGTCATATGCCTGTTTCCGAGTATGTTACTCCCGAAGCCTTTGAGAGGTATCGATCCCTTGGTGTTGACATGGGCTTCCGTTATGTGGCTTCGGGCCCAATGGTTCGATCTTCCTACAAAGCTGGTGAGTTCTACATAAAAGCCATGATTGAAGCTGACAGAGCAAAAGCTACGACTGCAATATAGTTGATCCTCTTTCCTTGACATTGTTACACTGCAAAT AAAGTCGCAGGATTCTAAAAGTTCTTATTGGAAAAACATGTTCATTTTTGTCATAATTGCAATCGTGCTCCTTTCAACTTCTCACTGCCCCTTGTACCATTTCAACATCTCCAAGCTATGTTTGAAATTGTTGCTCTCTTTTGTTTTTTAAAGGGAAAATCACGAGTCCCT                                                                                          ]
[+] EMBL AA753210             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCTACATAAAANCCATGATTGAAGCTGACAGAGCAAAAGCTACGACTGCAATATAGTTGACCCTCTNNCCTTGACATTGTTACACTGCAAATGGGAGTCGCAGGATTCTAAAAGTTCTTATTGGAAAAACATGTTCATTTCTGTCATAATTGCAATCGTGCCCCTTTCAACTTCTCACTGCCCCTTGTACCATTTCAACATCTCCAAGCTATGTTTGAAATTGTTGCTCTCTTTTGTTTTATAATGTAAAAATCACGAATCCCTGTGGTCCAGTTGTCAATCATTCATTCATTGCTGTAAACTTCAACAAGTANCAGGAAATCAAGTCAAACTACCCACTGAAAATGTAGATAT]


>consensus_6106#0 CAAACCAAGCAAACTCCATCTCATCGTCGCTCCGGTCCCCACCCTACTCCACCAACTCCC GCCGCCGCCGCCGCCGGCGGTCGTGCGCTCCGGGCCGCAGCCATGCACGGCCGCCGCCAC CTCGCCGCCTCCCTGGCCCGCGCCCTGACCTACGCCCCCTCCCGCTCCATCTCCTCCACC CCGTCGCTCCTCCAAACCCTCGACCCGTCCACGCCCTCCCCCGCGGCCGCCCCGCCCACC GCGGGGCGGCTCGCGGAGCTCCGGCAGCGGCTGCAGGCGGACGCGCCGTCGCTGGGGGAC TTCACGTACTCGGTGGAGGTGGGGACGCGGAAGAAGCCGCTGCCCAAGCCCAAGTGGATG AAGGAGACGATACCAGGCGGCGCCAAGTACGCGGGGATCAAGGCCAAGCTGCGGGAGCTG AAGCTGCACACCGTCTGCGAGGAGGCGCGCTGCCCCAACCTCGGCGAGTGCTGGTCCGGC GGCGAGACCGGCACCGCCACCGCCACCATCATGATCCTCGGGGACACCTGCACGCGCGGC TGCAGGTTTTGTAATGTCAAGACCTCGCGAACTCCTCCGCCACCAGATCCTGATGAACCT TCTAATGTTGCTCAAGCTATTGCCTCGTGGGGCCTGGAGTATATTGTCATCACAAGTGTT GACCGCGATGATTTACCTGATCAAGGGAGTGGTCACTTTGCTGAAACAGTTCAAAAGCTA AAGGTGTTGAAGCCAGAAATGCTTATTGAAGCACTTGTTCCTGATTTCCGTGGAGACCCA GCATGTGTAGAGAAGGTTGCTACTTCTGGGTTGCATGTTTTCGCCCACAACATTGAAACA GTTGAAGAGCTGCAAAGAAATGTGAGAGATCATCGTGCGAACTTCAAGCAATCAATAGAT GTCCTGAAATTGGCAAAAGAGTATGCTCCAGCTGGTACCCTCACAAAGACATCAATCATG CTGGGTTGTGGAGAAACGCCTGATCAGGTTATCAGCACGACGGAAAAGGTTAGGGCTGCT GGTGTTGATGTAATGACATTTGGTCAGTACATGAGACCATCTAAACGTCATATGCCTGTT TCCGAGTATGTTACTCCCGAAGCCTTTGAGAGGTATCGATCCCTTGGTGTTGACATGGGC TTCCGTTATGTGGCTTCGGGCCCAATGGTTCGATCTTCCTACAAAGCTGGTGAGTTCTAC ATAAAAGCCATGATTGAAGCTGACAGAGCAAAAGCTACGACTGCAATATAGTTGATCCTC TTTCCTTGACATTGTTACACTGCAAATAAAGTCGCAGGATTCTAAAAGTTCTTATTGGAA AAACATGTTCATTTTTGTCATAATTGCAATCGTGCTCCTTTCAACTTCTCACTGCCCCTT GTACCATTTCAACATCTCCAAGCTATGTTTGAAATTGTTGCTCTCTTTTGTTTTATAATG TAAAAATCACGAGTCCCTGTGGTCCAGTTGTCAATCATTCATTCATTGCTGTAAACTTCA ACAGTAGCAGGAAGTCAAGTCAAACTACCCACTGAAAATGTAGATAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)