These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 721 fasta sequence [GTGGTTCTAGGGATGAGACTCGGTGGCCTTCCTCATGGCGTGCGCTGCCCCGTACTCCGGCGTGAAGCGTGGAGGGCGGATGGGCGCAGCTATCAGGAGGCCACTACGGCGAGGTCGTCAACATCAACTTTCGTTGCTACCCGGTTCTACTGCAACACCTCGAAGAATGGCGAGGCAGCGACATCGGCGACCCCCATCTCCGCTTTCTGATGGGGCGGAGCCCCTACCGGGGTTGCAGGTCCGATACAGACGGAGTATGGCACCTCCCAGGGGTTGAGCAGCCAGCATTGGTAGCCATCGGCG-TGAGGGTGCAGCAGACCGGCGCCGTCGTTCGACCCCGCTAGCGACCTCCGACGAGTTCCAACGGCAAGGAGGTGCCCTCTCACATCATCCCAGATCCGATTGCCCACTGTTACCGACGTGGTGGCAGGCCCTCCTT-GGAGGGAAGGAGCTAGGACGTTGAAGCAACTGCTGGCTCCTAGACTGGGTCGCCGACGCTGGTTGCATCCATCTCCGAGACCAGCGGCACTGGATCTGGAAGACTCCTGCTGTCTCTCCTCCCCGAGGAGGAGATGCGTTTCTTTTATTCTTCCTCTTTCGATTTGTAATTTTTTTTACTGTGAAGAATATGATTGATTTGCATGGTTAAAATAATCTTGATTGTGTGTGATGTATGCACAGTACAAATATTACTACGAACACATCAAAAAGTGATATAAAC] [+] EMBL AK120772 [GTGGTTCTAGGGATGAGACTCGGTGGCCTTCCTCATGGCGTGCGCTGCCCCGTACTCCGGCGTGAAGCGTGGAGGGCGGATGGGCGCAGCTATCAGGAGGCCACTACGGCGAGGTCGTCAACATCAACTTTCGTTGCTACCCGGTTCTACTGCAACACCTCGAAGAATGGCGAGGCAGCGACATCGGCGACCCCCATCTCCGCTTTCTGATGGGGCGGAGCCCCTACCGGGGTTGCAGGTCCGATACAGACGGAGTATGGCACCTCCCAGGGGTTGAGCAGCCAGCATTGGTAGCCATCGGCG TGAGGGTGCAGCAGACCGGCGCCGTCGTTCGACCCCGCTAGCGACCTCCGACGAGTTCCAACGGCAAGGAGGTGCCCTCTCACATCATCCCAGATCCGATTGCCCACTGTTACCGACGTGGTGGCAGGCCCTCCTT GGAGGGAAGGAGCTAGGACGTTGAAGCAACTGCTGGCTCCTAGACTGGGTCGCCGACGCTGGTTGCATCCATCTCCGAGACCAGCGGCACTGGATCTGGAAGACTCCTGCTGTCTCTCCTCCCCGAGGAGGAGATGCGTTTCTTTTATTCTTCCTCTTTCGATTTGTAATTTTTTTTACTGTGAAGAATATGATTGATTTGCATGGTTAAAATAATCTTGATTGTGTGTGATGTATGCACAGTACAAATATTACTACGAACACATCAAAAAGTGATATAAAC] [+] EMBL C73460 [ ACTCGGTGGCCTTCCTCATGGCGTGCGCTGCCCCGTACTCCGGCGTGAAGCGTGGAGGGCGGATGGGCGCA NTATCAGGAGGCCACTACGGCGAGGTCGTCAACATCAACTTTCGTTGCTACCCGGTTCTACTGCAACACCTCGAAGAATGGCGAGGCAGCGACATCGGCGACCCCCATCTCCGCTTTCTGATGGGGCGGAGCCTANCCCGGGGTTGCAGGTCCGATACAGACGGAGTATGGCACCTCCCAGGGGTTGAGCAGCCAGCATTGGTAGCCATCGGCGTTGAGGGTGCAGCAGACCGGCGCCGTCGTTCGACCCCGCTAGCGACCTTCGACGAGTTCCAACGGCAAGGAGGTGCCCTTTTACATCATNCCAGATCCGATTGCCCACTGTTANCGACGTGGTGGNAGGCCTTCTTG GGAGGGAAGGAGtt ] [+] EMBL AU165711 [ CTCGGTGGCTTTCCTCATGGCGTGCGNTGCCCCGTACTCCGGCGT AAGCGTGNAGGGCGGATGGGCGCAGCTATCAGGAGGCCACTACGGCGAGGTCGTCAACATCAACTTTCGTTGCTACCCGGTTCTACTGCAACACCTCGAAGAATGGCGAGGCAGCGACATCGGCGACCCCCATCTCCGCTTTCTGATGGGGCGGAGCCCCTACCGGGGTTGCAGGTCCGATACAGACGGAGTATGGCACCTCCCAGGGGTTGAGCAGCCAGCATTGGTAGCCATCGGCG TGAGGGTGCAGCAGACCGGCGCCGTCGTTCGACCCCGCTAGCGACCTCCGACGAGTTCCAACGGCAAGGAGGTGCCCTCTCACATCATCCCAGATCCGATTGCCCACTGTTACCGACGTGGTGGCAGGCCCTCCTTGGGAGGGAAGGAGCTAGGACGTTGAAGCAACTGCTGGCTCCTAGACTGGGTCGCCGACGCTGGTTGCATCCATCTCCAAGACCAGCGGCACTGGATCTGGAAGACTCCTGCTGTCTCTCCTCCCCGAGGAGGAGATGCGTTTCTTTTATTCTTCCTCTTTCGATTTGTAATTTTTTTTACTGTGAAGAATATGATTGATTTGCATGGTTAAAATAAaaaa ] consensusID : consensus_6111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [AGAGGCCGAGCAAAGGGGGAAAGGCGGGGGTCCTAGGGATAAACCTCGTGGCCTTCCCCCATGGCGTGCGCTGCCCCGTAGTCCGGCGTGAAGCGTGGAGGGGGGATGGGCCCAGCTATCGGGAGGCCACTACGGCGAGGTGGTCAACATCAACTTTCGTTGCTACCCGGTTCTACTGCAACACCTCGAAGAATGGCGAGGCAGCGACATCGGCGACCCCAATCTCCGCTTCTGATGGGGCGGAGCTCCTACCGGGGTTGCAGGTCCGATACAGACGGAGTATGGCACCTCCCAGGGGTTGAGCAGCCAGCATTGGTAGCCATCGGCGTGAGGGTGCAGCAGACCGGGGCCGTCGTTCAACCCCGCTAGCGACCTCCGATGAGTTCCAACGGCAAGGAGGTGCCCTCTCACATCATCCCAGATCCGATTGCCCATTGTTACCGACGTGGTGGCAGGCCCTCCTTGGGAGGGAAGGAGCTAGGACGTTGAAGCAACTGCTGGCTCCTAGACTGGGTCGCCGACGCTGGTTGCATCCATCTCCAAGACCAGCGGCACTGGATCTGGATTACTCCTGCTGTCTCTCCTCCCCGAGGAGGAGATGCGTTTCTTTTATTCTTCCTCTTTCGATTTGTAAATTTTTTTACTGTGAAGAATATGATTGATTTGCATGATTAAAAAAAAAAAAAAAAAA] [-] EMBL CA759762 [AGAGGCCGAGCAAAGGGGGAAAGGCGGGGGTCCTAGGGATAAACCTCGTGGCCTTCCCCCATGGCGTGCGCTGCCCCGTAGTCCGGCGTGAAGCGTGGAGGGGGGATGGGCCCAGCTATCGGGAGGCCACTACGGCGAGGTGGTCAACATCAACTTTCGTTGCTACCCGGTTCTACTGCAACACCTCGAAGAATGGCGAGGCAGCGACATCGGCGACCCCAATCTCCGCTTCTGATGGGGCGGAGCTCCTACCGGGGTTGCAGGTCCGATACAGACGGAGTATGGCACCTCCCAGGGGTTGAGCAGCCAGCATTGGTAGCCATCGGCGTGAGGGTGCAGCAGACCGGGGCCGTCGTTCAACCCCGCTAGCGACCTCCGATGAGTTCCAACGGCAAGGAGGTGCCCTCTCACATCATCCCAGATCCGATTGCCCATTGTTACCGACGTGGTGGCAGGCCCTCCTTGGGAGGGAAGGAGCTAGGACGTTGAAGCAACTGCTGGCTCCTAGACTGGGTCGCCGACGCTGGTTGCATCCATCTCCAAGACCAGCGGCACTGGATCTGGATTACTCCTGCTGTCTCTCCTCCCCGAGGAGGAGATGCGTTTCTTTTATTCTTCCTCTTTCGATTTGTAAATTTTTTTACTGTGAAGAATATGATTGATTTGCATGATTAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6111#0 --------------------------GTGGTTCTAGGGATGAGACTCGGTGGCCTTCCTC 34 consensus_6111#1 AGAGGCCGAGCAAAGGGGGAAAGGCGGGGGTCCTAGGGATAAACCTCGTGGCCTTCCCCC 60 * *** ******** * **** * * * ** * consensus_6111#0 ATGGCGTGCGCTGCCCCGTACTCCGGCGTGAAGCGTGGAGGGCGGATGGGCGCAGCTATC 94 consensus_6111#1 ATGGCGTGCGCTGCCCCGTAGTCCGGCGTGAAGCGTGGAGGGGGGATGGGCCCAGCTATC 120 ******************** ********************* ******** ******** consensus_6111#0 AGGAGGCCACTACGGCGAGGTCGTCAACATCAACTTTCGTTGCTACCCGGTTCTACTGCA 154 consensus_6111#1 GGGAGGCCACTACGGCGAGGTGGTCAACATCAACTTTCGTTGCTACCCGGTTCTACTGCA 180 ******************** ************************************** consensus_6111#0 ACACCTCGAAGAATGGCGAGGCAGCGACATCGGCGACCCCCATCTCCGCTTTCTGATGGG 214 consensus_6111#1 ACACCTCGAAGAATGGCGAGGCAGCGACATCGGCGACCCCAATCTCCGCTT-CTGATGGG 239 **************************************** ********** ******** consensus_6111#0 GCGGAGCCCCTACCGGGGTTGCAGGTCCGATACAGACGGAGTATGGCACCTCCCAGGGGT 274 consensus_6111#1 GCGGAGCTCCTACCGGGGTTGCAGGTCCGATACAGACGGAGTATGGCACCTCCCAGGGGT 299 ******* **************************************************** consensus_6111#0 TGAGCAGCCAGCATTGGTAGCCATCGGCGTGAGGGTGCAGCAGACCGGCGCCGTCGTTCG 334 consensus_6111#1 TGAGCAGCCAGCATTGGTAGCCATCGGCGTGAGGGTGCAGCAGACCGGGGCCGTCGTTCA 359 ************************************************ ********** consensus_6111#0 ACCCCGCTAGCGACCTCCGACGAGTTCCAACGGCAAGGAGGTGCCCTCTCACATCATCCC 394 consensus_6111#1 ACCCCGCTAGCGACCTCCGATGAGTTCCAACGGCAAGGAGGTGCCCTCTCACATCATCCC 419 ******************** *************************************** consensus_6111#0 AGATCCGATTGCCCACTGTTACCGACGTGGTGGCAGGCCCTCCTTGG-AGGGAAGGAGCT 453 consensus_6111#1 AGATCCGATTGCCCATTGTTACCGACGTGGTGGCAGGCCCTCCTTGGGAGGGAAGGAGCT 479 *************** ******************************* ************ consensus_6111#0 AGGACGTTGAAGCAACTGCTGGCTCCTAGACTGGGTCGCCGACGCTGGTTGCATCCATCT 513 consensus_6111#1 AGGACGTTGAAGCAACTGCTGGCTCCTAGACTGGGTCGCCGACGCTGGTTGCATCCATCT 539 ************************************************************ consensus_6111#0 CCGAGACCAGCGGCACTGGATCTGGAAGACTCCTGCTGTCTCTCCTCCCCGAGGAGGAGA 573 consensus_6111#1 CCAAGACCAGCGGCACTGGATCTGGATTACTCCTGCTGTCTCTCCTCCCCGAGGAGGAGA 599 ** *********************** ******************************** consensus_6111#0 TGCGTTTCTTTTATTCTTCCTCTTTCGATTTGTAATTTTTTTTACTGTGAAGAATATGAT 633 consensus_6111#1 TGCGTTTCTTTTATTCTTCCTCTTTCGATTTGTAAATTTTTTTACTGTGAAGAATATGAT 659 *********************************** ************************ consensus_6111#0 TGATTTGCATGGTTAAAATAATCTTGATTGTGTGTGATGTATGCACAGTACAAATATTAC 693 consensus_6111#1 TGATTTGCATGATTAAAAAAAAAAAAAAAAAA---------------------------- 691 *********** ****** ** * consensus_6111#0 TACGAACACATCAAAAAGTGATATAAAC 721 consensus_6111#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||