Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6116 cluster # 6116       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6116#0 length = 2786 sequences # 4  

consensusID : consensus_6116#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2786
fasta sequence
                              [ACCTCACCTCTCGCCATCGCCACCCCCAACCGCCGACGAGATCGAGGCCACCGGCGAGATCCGCCGCGAGATCCTCCCCTTCCCCTACTCCGATGCGATCGCCTCGGTTCTAGATCCCCCTCGCTCGCACGCGGCGGGGCATGATGGCGCAGGCGAGCGACCTGGAGCCGCTGCGGTCGGGGGCGGGGGCGCTGCCGTCGTCGGCGGACCCGGACTCGCCGTCGACGCCGAGGAGGAGCCGCGTGCGCGAGCTGCTGCGGAGCCTGGACCGCCGGCTGTCCAGCCGGGGGCGGCACCACCGCCACGCAGCGGAGGGCGCGGCGGCGTCCCCCAGGGGCGGCGGCGGCGGGGAGCCCGGGTCCGAGGACAGCGACGAGCTCGGGGACGGCGCGCCGCCCGAGTGGGCGCTGCTGCTCGTCGGCTGCCTCCTCGGCCTCGCCACCGGCATCTGCGTCGCTGCGTTCAACCGCGGGGTGCATATCATACATGAATGGGCATGGGCAGGCACACCCACAGAGGGAGCTGCTTGGCTTCGCCTCCAGAGACTTGCTGATACATGGCATAGGATATTGTTAATTCCAGTGACTGGTGGAGTTGTTGTTGGTATGATGCACGGATTACTGGAGATATTTGAGCAGATAAAACAATCATTATCATCTCAAAGGGAAGGTGTTGATTTCATGGCTGCGATTTTTCCTACAATCAAAGCAATACAAGCTGCAATTACTCTAGGGACGGGATGTTCATTGGGGCCAGAAGGGCCAAGCGTTGATATTGGTAAATCTTGTGCATATGGATGTGCTGAAATGATGGAGAACAATAGGGAACGGAGAATTGCTCTTGTTGCTGCCGGATCAGCTGCTGGGATTGCTTCAGGTTTTAATGCTGCGGTTGCTGGATGTTTTTTTGCTATTGAAACAGTACTGAGGCCACTTCGAGCAGAGAATTCACCGCCATTTACCACTGCTATGATTATATTGGCATCAGTTATATCATCAACTGTGTCCACTGTTTTGCTAAGGGAGAAGGCAGCTTTTATTGTCCCGACGTATGAACTAAAATCTGCTGCTGAGTTACCACTCTACCTTATCCTAGGCATGCTTTGTGGGGTAGTGAGTGTGGCATTCAGACAGTTGGTGGTTTGGTTCACAAAGACTTTTGACTTGATAAGGAAGAAATTCAGCCTCCCTGCTGTAGTATGCCCTGCGTTAGGGGGTCTTGGAGCAGGTTTAATAGCTCTAAGGTACCCTGGAATACTGTACTGGGGCTTCACCAATGTTGATGAAATTTTACATACTGGAAAAAGTGCCTCAGCCCCTGGAATCTGGCTCTTAGCTCAGTTGGCTGCTGCAAAAGTTGTAGCAACTGCACTCTGCAAGGGTTCTGGTCTTGTTGGTGGCCTTTATGCTCCAAGCTTGATGATTGGTGCTGCTGTTGGTGCTGTATTTGGAGGCTCAGCAGCAGAACTAATAAACTCTGCCATCCCGGGTAACACTGCTGTTGCACACCCTCAAGCTTATGCACTAGTGGGAATGGCTGCCACACTAGCATCAGTCTGCTCAGTTCCATTGACTTCAGTACTACTACTATTCGAACTAACAAAAGATTACAGAATTTTACTGCCTCTGATGGGAGCTGTTGGTTTAGCAATATGGGTGCCATCTGTTGTAATGTCTGGCAACAAAGAGGCGTTTGAGGCTACATCTCCTCGGCATGGTTATTCTTCACTATTACCTCCTACAGATAGGAATGAGACAGACCGGAGACGACCAGACAGAGATGACGTTGAACTTGCAATTCTAGACGATGATCCCTACCGCTATGGTATTAACAATGAGGATATGCTTCTTGATGATTTAAAGGTATCACAAGCAATGTCAAAGCAATTTATTAAGGTTACACCTACGGTGACTATCAAGGAGGCAACAAGGCTTATGCATGATAAGCAGCAAAATTGTGTTCTTGTAGTAGACAGTGAAGATTTTCTTGAAGGAATTGTTACGATTGGTGACATTCGCCGTAAAGGATTTGAATCTGAATTAAGTGAAGATACTCCACGGAATGGGGCAAATTCATCTACTTTGGATGCAAATTCTTCTCTTGTTTCATCATGCCTCACTAGAGGGTTTCAGTACCACGGCAATGAAAGAGGACTAGTGACCTGCTTTCCAGATACAGATCTGAGCACTGCTAAGGTGCTCATGGAAGTGAAAGGTATCAAGCAACTTCCAGTGGTAAAACGGAGGGCTGGCCGTAGGAATGATGGAAGACGTAAGGTCCTTGGCCTTCTTCATTATGATTCAATAGGGTGGTGCTTAAGGGAAGAGCTTGAGCGGTGGAAAGCCATTTATCAAAGAGAGAATTTCCAGCAGTCAGCTGTTAATGGCCACTGAGCAAAAAGAAGTGCTGAAGTTTTGGTTGTACGTTTTAGTGAAGAGAAATACCAAATTTATAAAGTGACATTTCAACATGATTAGGGTTAACTTAAAACCTCCTCACTCAAAAAATATCCTCGTCAAATGTAAAGTTTCTTGGAGTTGCCACATATGCACATTTTTGTGCAGAGAAAATATATAAGCGGTGATGGTGTGATTCGCTTTTGTTAGCGTTGACTGTTTCGAAGTTCTGACATGACAGTATACTGGGTACACTTTGGTCTGTCCCGCAAAAAAGCATTGCAAATGGTGACTGTTTATTGTTTCTGTCCGATCTTCTGCTGCACGTCAATTACTGGATAATGCAAATCTGCGGACCAGTTACTCCTGTAAAGTTATAAAATACCTTTT]

[+] EMBL AK120828             [ACCTCACCTCTCGCCATCGCCACCCCCAACCGCCGACGAGATCGAGGCCACCGGCGAGATCCGCCGCGAGATCCTCCCCTTCCCCTACTCCGATGCGATCGCCTCGGTTCTAGATCCCCCTCGCTCGCACGCGGCGGGGCATGATGGCGCAGGCGAGCGACCTGGAGCCGCTGCGGTCGGGGGCGGGGGCGCTGCCGTCGTCGGCGGACCCGGACTCGCCGTCGACGCCGAGGAGGAGCCGCGTGCGCGAGCTGCTGCGGAGCCTGGACCGCCGGCTGTCCAGCCGGGGGCGGCACCACCGCCACGCAGCGGAGGGCGCGGCGGCGTCCCCCAGGGGCGGCGGCGGCGGGGAGCCCGGGTCCGAGGACAGCGACGAGCTCGGGGACGGCGCGCCGCCCGAGTGGGCGCTGCTGCTCGTCGGCTGCCTCCTCGGCCTCGCCACCGGCATCTGCGTCGCTGCGTTCAACCGCGGGGTGCATATCATACATGAATGGGCATGGGCAGGCACACCCACAGAGGGAGCTGCTTGGCTTCGCCTCCAGAGACTTGCTGATACATGGCATAGGATATTGTTAATTCCAGTGACTGGTGGAGTTGTTGTTGGTATGATGCACGGATTACTGGAGATATTTGAGCAGATAAAACAATCATTATCATCTCAAAGGGAAGGTGTTGATTTCATGGCTGCGATTTTTCCTACAATCAAAGCAATACAAGCTGCAATTACTCTAGGGACGGGATGTTCATTGGGGCCAGAAGGGCCAAGCGTTGATATTGGTAAATCTTGTGCATATGGATGTGCTGAAATGATGGAGAACAATAGGGAACGGAGAATTGCTCTTGTTGCTGCCGGATCAGCTGCTGGGATTGCTTCAGGTTTTAATGCTGCGGTTGCTGGATGTTTTTTTGCTATTGAAACAGTACTGAGGCCACTTCGAGCAGAGAATTCACCGCCATTTACCACTGCTATGATTATATTGGCATCAGTTATATCATCAACTGTGTCCACTGTTTTGCTAAGGGAGAAGGCAGCTTTTATTGTCCCGACGTATGAACTAAAATCTGCTGCTGAGTTACCACTCTACCTTATCCTAGGCATGCTTTGTGGGGTAGTGAGTGTGGCATTCAGACAGTTGGTGGTTTGGTTCACAAAGACTTTTGACTTGATAAGGAAGAAATTCAGCCTCCCTGCTGTAGTATGCCCTGCGTTAGGGGGTCTTGGAGCAGGTTTAATAGCTCTAAGGTACCCTGGAATACTGTACTGGGGCTTCACCAATGTTGATGAAATTTTACATACTGGAAAAAGTGCCTCAGCCCCTGGAATCTGGCTCTTAGCTCAGTTGGCTGCTGCAAAAGTTGTAGCAACTGCACTCTGCAAGGGTTCTGGTCTTGTTGGTGGCCTTTATGCTCCAAGCTTGATGATTGGTGCTGCTGTTGGTGCTGTATTTGGAGGCTCAGCAGCAGAACTAATAAACTCTGCCATCCCGGGTAACACTGCTGTTGCACACCCTCAAGCTTATGCACTAGTGGGAATGGCTGCCACACTAGCATCAGTCTGCTCAGTTCCATTGACTTCAGTACTACTACTATTCGAACTAACAAAAGATTACAGAATTTTACTGCCTCTGATGGGAGCTGTTGGTTTAGCAATATGGGTGCCATCTGTTGTAATGTCTGGCAACAAAGAGGCGTTTGAGGCTACATCTCCTCGGCATGGTTATTCTTCACTATTACCTCCTACAGATAGGAATGAGACAGACCGGAGACGACCAGACAGAGATGACGTTGAACTTGCAATTCTAGACGATGATCCCTACCGCTATGGTATTAACAATGAGGATATGCTTCTTGATGATTTAAAGGTATCACAAGCAATGTCAAAGCAATTTATTAAGGTTACACCTACGGTGACTATCAAGGAGGCAACAAGGCTTATGCATGATAAGCAGCAAAATTGTGTTCTTGTAGTAGACAGTGAAGATTTTCTTGAAGGAATTGTTACGATTGGTGACATTCGCCGTAAAGGATTTGAATCTGAATTAAGTGAAGATACTCCACGGAATGGGGCAAATTCATCTACTTTGGATGCAAATTCTTCTCTTGTTTCATCATGCCTCACTAGAGGGTTTCAGTACCACGGCAATGAAAGAGGACTAGTGACCTGCTTTCCAGATACAGATCTGAGCACTGCTAAGGTGCTCATGGAAGTGAAAGGTATCAAGCAACTTCCAGTGGTAAAACGGAGGGCTGGCCGTAGGAATGATGGAAGACGTAAGGTCCTTGGCCTTCTTCATTATGATTCAATAGGGTGGTGCTTAAGGGAAGAGCTTGAGCGGTGGAAAGCCATTTATCAAAGAGAGAATTTCCAGCAGTCAGCTGTTAATGGCCACTGAGCAAAAAGAAGTGCTGAAGTTTTGGTTGTACGTTTTAGTGAAGAGAAATACCAAATTTATAAAGTGACATTTCAACATGATTAGGGTTAACTTAAAACCTCCTCACTCAAAAAATATCCTCGTCAAATGTAAAGTTTCTTGGAGTTGCCACATATGCACATTTTTGTGCAGAGAAAATATATAAGCGGTGATGGTGTGATTCGCTTTTGTTAGCGTTGACTGTTTCGAAGTTCTGACATGACAGTATACTGGGTACACTTTGGTCTGTCCCGCAAAAAAGCATTGCAAATGGTGACTGTTTATTGTTTCTGTCCGATCTTCTGCTGCACGTCAATTACTGGATAATGCAAATCTGCGGACCAGTTACTCCTGTAAAGTTATAAAATACCTTTT]
[-] EMBL CB631254             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGTTGAACTTGC ATTCTAGACGATGATCCCTACCGCTATGGTATTAACAATGAGGATATGCTTCTTGATGATNTAAAGGTATCACAAGCAATGTCAAAGCAATTTATTAAGGTTACACCTACAGTGACTATCAAGGAGGCAACAAGGCTTATGCATGATAAGCAGCAAAATTGTGTTCTTGTAGTAGACAGTGAAGATTTTCTTGAAGGAATTGTTACGATTGGTGACATTCGCCGTAAAGGATTTGAATCTGAATTAAGTGAAGATACTCCACGGAATGGGGCAAATTCATCTACTTTGGATGCAAATTCTTCTCTTGTTTCATCATGCCTCACTAGAGGGTTTCAGTACCACGGCAATGAAAGAGGACTAGTGACCTGCTTTCCAGATACAGATCTGAGCACTGCTAAGGTGCTCATGGAAGTGAAAGGTATCAAGCAACTTCCAGTGGTAAAACGGAGGGCTGGCCGTAGGAATGATGGAAGACGTAAGGTCCTTGGCCTTCTTCATTATGATTCAATAGGGTGGTGCTTAAGGGAAGAGCTTGAGCGGTGGAAAGCCATTTATCAAAGAGAGAATTTCCAGCAGTCAGCTGTTAATGGCCACTGAGCAAAAAGAAGTGCTGAAGTTTTGGTTGTACGTTTTAGTGAAGAGAAATACCAAATTTATAAAGTGACATTTCAACATGATTAGGGTTAACTTAAAACCTCCTCACTCAAAAAATATCCTCGTCAAATGTAAAGTTTCTTGGAGTTGCCACATATGCACATTTTTGTGCAGAGAAGATATATAAGCGGTGATGGTGTGATTCGCTTTTGT                                                                                                                                                                                       ]
[+] EMBL CA763802             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAAGGGGGCAACAAGGCTTATGCATGATAAGCAGCAAAATTGTGTTCTTGTAGTAGACAGTGAAGATTTTCTTGAAGGAATTGTTACGATTGGTGACATTCGCCGTAAAGGATTTGAATCTGAATTAAGTGAAGATACTCCACGGAATGGGGCAAATTCATCTACTTTGGATGCAAATTCTTCTCTTGTTTCATCATGCCTCACTAGAGGGTTTCAGTACCACGGCAATGAAAGAGGACTAGTGACCTGCTTTCCAGATACAGATCTGAGCACTGCTAAGGTGCTCATGGAAGTGAAAGGTATCAAGCAACTTCCAGTGGTAAAACGGAGGGCTGGCCGTAGGAATGATGGAAGACGTAAGGTCCTTGGCCTTCTTCATTATGATTCAATAGGGTGGTGCTTAAGGGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB631253             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGGCAACAAGGCTTATGCATGATAAGCAGCAAAATCGTGTTCTTGTAGTAGACAGTGAAGATTTTCTTGAAGGAATTGTTACGATTGGTGACATTCGCCGTAAAGGATTTGAATCTGAATTAAGTGAAGATACTCCACGGAATGGGGCAAATTCATCTACTTTGGATGCAAATTATTCTCTTGTTTCATCATGCCTCACTAGAGGGTTTCAGTCCCACGGCAATGAAAGAGGACTAGTGACCTGCTTTCCAGATACAAATCTGAGCACTGCTAAGGTGATCATGGAAGTGAAAGGTATCAACCAACTTCCAGTGGTAAAACGGAGGGCTGGCCGTAGGAATGATGGAAGACGTAAGGTCCTTGGCCTTCTTCATTATAATTCAATAGGCCGGTCCTTAAGGGAAGATCTTGAGCCCCCGAAATCCACATATCAAAGAGAAAATTTCCAACAATCAGGTGCTAATGGCCCCTCATCAAAAAGA                                                                                                                                                                                                                                                                                                                                                                                                ]


>consensus_6116#0 ACCTCACCTCTCGCCATCGCCACCCCCAACCGCCGACGAGATCGAGGCCACCGGCGAGAT CCGCCGCGAGATCCTCCCCTTCCCCTACTCCGATGCGATCGCCTCGGTTCTAGATCCCCC TCGCTCGCACGCGGCGGGGCATGATGGCGCAGGCGAGCGACCTGGAGCCGCTGCGGTCGG GGGCGGGGGCGCTGCCGTCGTCGGCGGACCCGGACTCGCCGTCGACGCCGAGGAGGAGCC GCGTGCGCGAGCTGCTGCGGAGCCTGGACCGCCGGCTGTCCAGCCGGGGGCGGCACCACC GCCACGCAGCGGAGGGCGCGGCGGCGTCCCCCAGGGGCGGCGGCGGCGGGGAGCCCGGGT CCGAGGACAGCGACGAGCTCGGGGACGGCGCGCCGCCCGAGTGGGCGCTGCTGCTCGTCG GCTGCCTCCTCGGCCTCGCCACCGGCATCTGCGTCGCTGCGTTCAACCGCGGGGTGCATA TCATACATGAATGGGCATGGGCAGGCACACCCACAGAGGGAGCTGCTTGGCTTCGCCTCC AGAGACTTGCTGATACATGGCATAGGATATTGTTAATTCCAGTGACTGGTGGAGTTGTTG TTGGTATGATGCACGGATTACTGGAGATATTTGAGCAGATAAAACAATCATTATCATCTC AAAGGGAAGGTGTTGATTTCATGGCTGCGATTTTTCCTACAATCAAAGCAATACAAGCTG CAATTACTCTAGGGACGGGATGTTCATTGGGGCCAGAAGGGCCAAGCGTTGATATTGGTA AATCTTGTGCATATGGATGTGCTGAAATGATGGAGAACAATAGGGAACGGAGAATTGCTC TTGTTGCTGCCGGATCAGCTGCTGGGATTGCTTCAGGTTTTAATGCTGCGGTTGCTGGAT GTTTTTTTGCTATTGAAACAGTACTGAGGCCACTTCGAGCAGAGAATTCACCGCCATTTA CCACTGCTATGATTATATTGGCATCAGTTATATCATCAACTGTGTCCACTGTTTTGCTAA GGGAGAAGGCAGCTTTTATTGTCCCGACGTATGAACTAAAATCTGCTGCTGAGTTACCAC TCTACCTTATCCTAGGCATGCTTTGTGGGGTAGTGAGTGTGGCATTCAGACAGTTGGTGG TTTGGTTCACAAAGACTTTTGACTTGATAAGGAAGAAATTCAGCCTCCCTGCTGTAGTAT GCCCTGCGTTAGGGGGTCTTGGAGCAGGTTTAATAGCTCTAAGGTACCCTGGAATACTGT ACTGGGGCTTCACCAATGTTGATGAAATTTTACATACTGGAAAAAGTGCCTCAGCCCCTG GAATCTGGCTCTTAGCTCAGTTGGCTGCTGCAAAAGTTGTAGCAACTGCACTCTGCAAGG GTTCTGGTCTTGTTGGTGGCCTTTATGCTCCAAGCTTGATGATTGGTGCTGCTGTTGGTG CTGTATTTGGAGGCTCAGCAGCAGAACTAATAAACTCTGCCATCCCGGGTAACACTGCTG TTGCACACCCTCAAGCTTATGCACTAGTGGGAATGGCTGCCACACTAGCATCAGTCTGCT CAGTTCCATTGACTTCAGTACTACTACTATTCGAACTAACAAAAGATTACAGAATTTTAC TGCCTCTGATGGGAGCTGTTGGTTTAGCAATATGGGTGCCATCTGTTGTAATGTCTGGCA ACAAAGAGGCGTTTGAGGCTACATCTCCTCGGCATGGTTATTCTTCACTATTACCTCCTA CAGATAGGAATGAGACAGACCGGAGACGACCAGACAGAGATGACGTTGAACTTGCAATTC TAGACGATGATCCCTACCGCTATGGTATTAACAATGAGGATATGCTTCTTGATGATTTAA AGGTATCACAAGCAATGTCAAAGCAATTTATTAAGGTTACACCTACGGTGACTATCAAGG AGGCAACAAGGCTTATGCATGATAAGCAGCAAAATTGTGTTCTTGTAGTAGACAGTGAAG ATTTTCTTGAAGGAATTGTTACGATTGGTGACATTCGCCGTAAAGGATTTGAATCTGAAT TAAGTGAAGATACTCCACGGAATGGGGCAAATTCATCTACTTTGGATGCAAATTCTTCTC TTGTTTCATCATGCCTCACTAGAGGGTTTCAGTACCACGGCAATGAAAGAGGACTAGTGA CCTGCTTTCCAGATACAGATCTGAGCACTGCTAAGGTGCTCATGGAAGTGAAAGGTATCA AGCAACTTCCAGTGGTAAAACGGAGGGCTGGCCGTAGGAATGATGGAAGACGTAAGGTCC TTGGCCTTCTTCATTATGATTCAATAGGGTGGTGCTTAAGGGAAGAGCTTGAGCGGTGGA AAGCCATTTATCAAAGAGAGAATTTCCAGCAGTCAGCTGTTAATGGCCACTGAGCAAAAA GAAGTGCTGAAGTTTTGGTTGTACGTTTTAGTGAAGAGAAATACCAAATTTATAAAGTGA CATTTCAACATGATTAGGGTTAACTTAAAACCTCCTCACTCAAAAAATATCCTCGTCAAA TGTAAAGTTTCTTGGAGTTGCCACATATGCACATTTTTGTGCAGAGAAAATATATAAGCG GTGATGGTGTGATTCGCTTTTGTTAGCGTTGACTGTTTCGAAGTTCTGACATGACAGTAT ACTGGGTACACTTTGGTCTGTCCCGCAAAAAAGCATTGCAAATGGTGACTGTTTATTGTT TCTGTCCGATCTTCTGCTGCACGTCAATTACTGGATAATGCAAATCTGCGGACCAGTTAC TCCTGTAAAGTTATAAAATACCTTTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)