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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1631 fasta sequence
[GGTTTGGGGGAGGGGGAGGGGGAGGGGATGCCGGAGCTGCCGGAGGTGGAGGCGGCGAGGAGGGCGCTGGAGGCGCACTGCGTGGGGAGGAGGATCGCGCGCTGCGCGGTGGCGGATGACCCCAAGGTGGTGGTCGCCGCCGCCGGGGGGCGCGTGGCGTTCGAGCGCGCCATGGTCGGCCGGACCATCGTCGCCGCGCGGCGGAGGGGCAAGAACCTCTGGCTCCGCCTCGACGCCCCTCCATTCCCCTCCTTCCAGTTCGGGATGGCAGGTGCGATCTACATTAAGGGAGTTCCTGTGACCAAGTACAAGAGATCAGTTGTCAGTTCTACAGACGAGTGGCCCTCCAAGTACTCCAAATTTTTTGTTCAACTTGATGATGGCTTAGAGTTTTCCTTCACTGATAAGAGGCGGTTTGCAAGAGTTCGGTTGTTTGAAGATCCCGAAACTGTACCCCCGATTTCTGAGTTAGGACCAGATGCTCTCTTTGAGCCGATGTCTTCTGACAGTTTTGCGGACTCGCTGAGCAGAAAGAAGATTGGAATAAAAGCTCTTCTACTCGATCAGAGCTTCATATCAGGAATTGGTAATTGGATTGCAGATGAGGTGCTTTACCAGTCGAGAACCCATCCATTACAGATTGCTTCAAGTCTATCCAGGGAGAGTTGTGAAGCACTACACCAAAGCATCCAAGAGGTTGTGAAATATGCTGTTGAAGTTGATGCTGATTGTGACTGCTTTCCTGTGGAATGGTTATTCCATCACCGATGGGGCAAGAAGCCTGGTAAAGTCAATGGACAGAAAATTGAGTTCATAACAGCTGGTGGCAGGACTACAGCATACGTGCCACAACTGCAGAAGCTGACTGGAATGCAATCTAGCAAAGTAGTCATTGCTAACCCAGAACAAGTGGCAGAGAACGATGATGCGAAGGAAATAGACACAGATCCAGAAGATGCTGATAATTTGAATACAAAGAAGCGAGGAGCAACTTCTAGGGTTGCCAGGGGAAAGCAAAAGAGAGATGCCATAGGTGCCCTTTCCAGAAAGACAAGGAAAAATGGTGGTGGCAAGGAGAAACCAGGTAGTGACTATAGTGAAGATGATGGTGAGACTGCTGAACCAAACAAAGTTAGCACCAGTAGCAAGGGCGAGAAGGCAGATCCGGTGAGAAGATCATCAAGGACCGCATCGAAACCCCGCCAGGTAAATAAATTAAAAGAAAGATAGCAAGAGATGAAGAGACTCGCTGATGTTCGCAAAGATCATTTTGGTGTGTGTATAGCTTTAGCTTTAGATGCTCTCCGATGGCCATATTGGTGAAATCCTTGTAGCCTTGATTAGTGAGTTCTTTTCTCTGTGTCTTGTGCGCTACTGTACCAGATTATTCAAAGATGCCCTCTTGGAAATTGGAAGGTGTAATCGTTCCATACTGGGCAAAACATATGCTTCTCCTGTGCAACATGAACAATGACATATCTAGGCTATGTTGCTCGTGTCAAACCACCACCTAGGTTATCTTTTTTTATTTTTTTTTAAGACGGAAGAAGTAAGGATGAATGTATACACACATGCTTGTCTATCATTCTTAAGATTTGAGTCTCTTGGGGACAGAGAGTAATCCATAGATT]
[+] EMBL AK065376 [GGTTTGGGGGAGGGGGAGGGGGAGGGGATGCCGGAGCTGCCGGAGGTGGAGGCGGCGAGGAGGGCGCTGGAGGCGCACTGCGTGGGGAGGAGGATCGCGCGCTGCGCGGTGGCGGATGACCCCAAGGTGGTGGTCGCCGCCGCCGGGGGGCGCGTGGCGTTCGAGCGCGCCATGGTCGGCCGGACCATCGTCGCCGCGCGGCGGAGGGGCAAGAACCTCTGGCTCCGCCTCGACGCCCCTCCATTCCCCTCCTTCCAGTTCGGGATGGCAGGTGCGATCTACATTAAGGGAGTTCCTGTGACCAAGTACAAGAGATCAGTTGTCAGTTCTACAGACGAGTGGCCCTCCAAGTACTCCAAATTTTTTGTTCAACTTGATGATGGCTTAGAGTTTTCCTTCACTGATAAGAGGCGGTTTGCAAGAGTTCGGTTGTTTGAAGATCCCGAAACTGTACCCCCGATTTCTGAGTTAGGACCAGATGCTCTCTTTGAGCCGATGTCTTCTGACAGTTTTGCGGACTCGCTGAGCAGAAAGAAGATTGGAATAAAAGCTCTTCTACTCGATCAGAGCTTCATATCAGGAATTGGTAATTGGATTGCAGATGAGGTGCTTTACCAGTCGAGAACCCATCCATTACAGATTGCTTCAAGTCTATCCAGGGAGAGTTGTGAAGCACTACACCAAAGCATCCAAGAGGTTGTGAAATATGCTGTTGAAGTTGATGCTGATTGTGACTGCTTTCCTGTGGAATGGTTATTCCATCACCGATGGGGCAAGAAGCCTGGTAAAGTCAATGGACAGAAAATTGAGTTCATAACAGCTGGTGGCAGGACTACAGCATACGTGCCACAACTGCAGAAGCTGACTGGAATGCAATCTAGCAAAGTAGTCATTGCTAACCCAGAACAAGTGGCAGAGAACGATGATGCGAAGGAAATAGACACAGATCCAGAAGATGCTGATAATTTGAATACAAAGAAGCGAGGAGCAACTTCTAGGGTTGCCAGGGGAAAGCAAAAGAGAGATGCCATAGGTGCCCTTTCCAGAAAGACAAGGAAAAATGGTGGTGGCAAGGAGAAACCAGGTAGTGACTATAGTGAAGATGATGGTGAGACTGCTGAACCAAACAAAGTTAGCACCAGTAGCAAGGGCGAGAAGGCAGATCCGGTGAGAAGATCATCAAGGACCGCATCGAAACCCCGCCAGGTAAATAAATTAAAAGAAAGATAGCAAGAGATGAAGAGACTCGCTGATGTTCGCAAAGATCATTTTGGTGTGTGTATAGCTTTAGCTTTAGATGCTCTCCGATGGCCATATTGGTGAAATCCTTGTAGCCTTGATTAGTGAGTTCTTTTCTCTGTGTCTTGTGCGCTACTGTACCAGATTATTCAAAGATGCCCTCTTGGAAATTGGAAGGTGTAATCGTTCCATACTGGGCAAAACATATGCTTCTCCTGTGCAACATGAACAATGACATATCTAGGCTATGTTGCTCGTGTCAAACCACCACCTAGGTTATCTTTTTTTATTTTTTTTTAAGACGGAAGAAGTAAGGATGAATGTATACACACATGCTTGTCTATCATTCTTAAGATTTGAGTCTCTTGGGGACAGAGAGTAATCCATAGATT]
[+] EMBL CA764247 [ TGCTAACCCAGAACAAGTGGCAGAGAACGATGATGCGAAGGAAATAGACACAGATCCAGAAGATGCTGATAATTTGAATACAAAGAAGCGAGGAGCAACTTCTAGGGTTGCCAGGGGAAAGCAAAAGAGAGATGCCATAGGTGCCCTTTCCAGAAAGACAAGGAAAAATGGTGGTGGCAAGGAGAAACCAGGTAGTGACTATAGTGAAGATGATGCTGAGACTGCTGAACCAAACAAAGTTAGCACCAGTAGCAAGGGCGAGAAGGCAGATCCGGTGAGAAGATCATCAAGGACCGCATCGAAACCCCGCCAGGTAAATAAATTAAAAGAAAGATAGCAAGAGATGAAGAGACCCGCTGATGTTCGCAAAGATCATTTTGGTGTGTGTATAGCTTTAGCTTTAGATGCTCTCCGATGGCCATATTGGTGAAATCCTTGTAGCCTTGATTAGTGAGTTCTTTTCTCTGTGTCTTGTGCGCTACTGTACCAGATTATTCAAAGATGCCCTCTTGGAAATTGGAAGGTGTAATCGTTCCATACTGGGCAAAACATATGCTTCTCCTGTGCAACATGAACAATGACATATCTAGGCTATGTTG ]
[+] EMBL AK058461 [ TGGTGGCAAGGAGAGACCAGGTAGTGACTATAGTGAAGATGATGGTGAGACTGCTGAGCCAAACAAAGTTAGCACCAGTAGCAAGGGCGAGAAGGCAGATCCGGTGAGACGATCATCAAGGACCGCATCGAAACCCCGCCAGGTAAATAAATTAAAAGAAAGATAGCAAGAGATGAAGAGACTCGCTGATGTTCGCAAAGATCATTTTGGTGTGTGTATAGCTTTAGCTTTAGATGCTCTCCGATGGCCATATTGGTGAAATCCTTGTAGCCTTGATTAGTGAGTTCTTTTCTCTGTGTCTTGTGCGCTACTGTACCAGATTATTCAAAGATGCCCTCTTGGAAATTGGAAGGTGTAATCGTTCCATACTGGGCAAAACATATGCTTCTCCTGTGCAACATGAACAATGACATATCTAGGCTATGTTGCTC ]
consensusID : consensus_6117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[TTGAGTTCATAACAGCTGGTGGCAGGACTACAGCATACGTGCCACAACTGCAGAAGCTGACTGGAATGCAATCTAGCAAAGTAGTCATTGCTAACCCAGAACAAGTGGCAGAGAACGATGATGCGAAGGAAATAGACACAGATCCAGAAGATGCTGATAATTTGAATACAAAGAAGCGAGGAGCAACTTCTAGGGTTGCCAGGGGAAAGCAAAAGAGAGATGCCATAGGTGCCCTTTCCAGAAAGACAAGGAAAAATGGTGGTGGCAAGGAGAAACCAGGTAGTGACTATAGTGAAGATGATGCTGAGACTGCTGAACCAAACAAAGTTAGCACCAGTAGCAAGGGCGAGAAGGCAGATCCGGTGAGAAGATCATCAAGGACCGCATCGAAACCCCGCCAGGTAAATAAATTAAAAGAAAGATAGCAAGAGATGAAGAAACTCGCTGATGTTCGCAAAGATCATTTTGGTGTGTGTATAGCTTTAGCTTTAGATGCTCTCCGATGGCCATATTGGTGAAATCCTTGTAGCCTTGATTAGTGAGTTCTTTTCTCTGTGTCTTGTGCGCTACTGTACCAGATTATTCAAAGATGCCCTCTTGGAAATTGGAAGGTGTAATCGTTCCATACTGGGCAAAACATATGCTTCTCCTGTGCAACATGAACAATGACATATCTAGGCTAAAAAAAAAAAAAA]
[-] EMBL CA762540 [TTGAGTTCATAACAGCTGGTGGCAGGACTACAGCATACGTGCCACAACTGCAGAAGCTGACTGGAATGCAATCTAGCAAAGTAGTCATTGCTAACCCAGAACAAGTGGCAGAGAACGATGATGCGAAGGAAATAGACACAGATCCAGAAGATGCTGATAATTTGAATACAAAGAAGCGAGGAGCAACTTCTAGGGTTGCCAGGGGAAAGCAAAAGAGAGATGCCATAGGTGCCCTTTCCAGAAAGACAAGGAAAAATGGTGGTGGCAAGGAGAAACCAGGTAGTGACTATAGTGAAGATGATGCTGAGACTGCTGAACCAAACAAAGTTAGCACCAGTAGCAAGGGCGAGAAGGCAGATCCGGTGAGAAGATCATCAAGGACCGCATCGAAACCCCGCCAGGTAAATAAATTAAAAGAAAGATAGCAAGAGATGAAGAAACTCGCTGATGTTCGCAAAGATCATTTTGGTGTGTGTATAGCTTTAGCTTTAGATGCTCTCCGATGGCCATATTGGTGAAATCCTTGTAGCCTTGATTAGTGAGTTCTTTTCTCTGTGTCTTGTGCGCTACTGTACCAGATTATTCAAAGATGCCCTCTTGGAAATTGGAAGGTGTAATCGTTCCATACTGGGCAAAACATATGCTTCTCCTGTGCAACATGAACAATGACATATCTAGGCTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6117#0 GGTTTGGGGGAGGGGGAGGGGGAGGGGATGCCGGAGCTGCCGGAGGTGGAGGCGGCGAGG 60
consensus_6117#1 ------------------------------------------------------------
consensus_6117#0 AGGGCGCTGGAGGCGCACTGCGTGGGGAGGAGGATCGCGCGCTGCGCGGTGGCGGATGAC 120
consensus_6117#1 ------------------------------------------------------------
consensus_6117#0 CCCAAGGTGGTGGTCGCCGCCGCCGGGGGGCGCGTGGCGTTCGAGCGCGCCATGGTCGGC 180
consensus_6117#1 ------------------------------------------------------------
consensus_6117#0 CGGACCATCGTCGCCGCGCGGCGGAGGGGCAAGAACCTCTGGCTCCGCCTCGACGCCCCT 240
consensus_6117#1 ------------------------------------------------------------
consensus_6117#0 CCATTCCCCTCCTTCCAGTTCGGGATGGCAGGTGCGATCTACATTAAGGGAGTTCCTGTG 300
consensus_6117#1 ------------------------------------------------------------
consensus_6117#0 ACCAAGTACAAGAGATCAGTTGTCAGTTCTACAGACGAGTGGCCCTCCAAGTACTCCAAA 360
consensus_6117#1 ------------------------------------------------------------
consensus_6117#0 TTTTTTGTTCAACTTGATGATGGCTTAGAGTTTTCCTTCACTGATAAGAGGCGGTTTGCA 420
consensus_6117#1 ------------------------------------------------------------
consensus_6117#0 AGAGTTCGGTTGTTTGAAGATCCCGAAACTGTACCCCCGATTTCTGAGTTAGGACCAGAT 480
consensus_6117#1 ------------------------------------------------------------
consensus_6117#0 GCTCTCTTTGAGCCGATGTCTTCTGACAGTTTTGCGGACTCGCTGAGCAGAAAGAAGATT 540
consensus_6117#1 ------------------------------------------------------------
consensus_6117#0 GGAATAAAAGCTCTTCTACTCGATCAGAGCTTCATATCAGGAATTGGTAATTGGATTGCA 600
consensus_6117#1 ------------------------------------------------------------
consensus_6117#0 GATGAGGTGCTTTACCAGTCGAGAACCCATCCATTACAGATTGCTTCAAGTCTATCCAGG 660
consensus_6117#1 ------------------------------------------------------------
consensus_6117#0 GAGAGTTGTGAAGCACTACACCAAAGCATCCAAGAGGTTGTGAAATATGCTGTTGAAGTT 720
consensus_6117#1 ------------------------------------------------------------
consensus_6117#0 GATGCTGATTGTGACTGCTTTCCTGTGGAATGGTTATTCCATCACCGATGGGGCAAGAAG 780
consensus_6117#1 ------------------------------------------------------------
consensus_6117#0 CCTGGTAAAGTCAATGGACAGAAAATTGAGTTCATAACAGCTGGTGGCAGGACTACAGCA 840
consensus_6117#1 -------------------------TTGAGTTCATAACAGCTGGTGGCAGGACTACAGCA 35
***********************************
consensus_6117#0 TACGTGCCACAACTGCAGAAGCTGACTGGAATGCAATCTAGCAAAGTAGTCATTGCTAAC 900
consensus_6117#1 TACGTGCCACAACTGCAGAAGCTGACTGGAATGCAATCTAGCAAAGTAGTCATTGCTAAC 95
************************************************************
consensus_6117#0 CCAGAACAAGTGGCAGAGAACGATGATGCGAAGGAAATAGACACAGATCCAGAAGATGCT 960
consensus_6117#1 CCAGAACAAGTGGCAGAGAACGATGATGCGAAGGAAATAGACACAGATCCAGAAGATGCT 155
************************************************************
consensus_6117#0 GATAATTTGAATACAAAGAAGCGAGGAGCAACTTCTAGGGTTGCCAGGGGAAAGCAAAAG 1020
consensus_6117#1 GATAATTTGAATACAAAGAAGCGAGGAGCAACTTCTAGGGTTGCCAGGGGAAAGCAAAAG 215
************************************************************
consensus_6117#0 AGAGATGCCATAGGTGCCCTTTCCAGAAAGACAAGGAAAAATGGTGGTGGCAAGGAGAAA 1080
consensus_6117#1 AGAGATGCCATAGGTGCCCTTTCCAGAAAGACAAGGAAAAATGGTGGTGGCAAGGAGAAA 275
************************************************************
consensus_6117#0 CCAGGTAGTGACTATAGTGAAGATGATGGTGAGACTGCTGAACCAAACAAAGTTAGCACC 1140
consensus_6117#1 CCAGGTAGTGACTATAGTGAAGATGATGCTGAGACTGCTGAACCAAACAAAGTTAGCACC 335
**************************** *******************************
consensus_6117#0 AGTAGCAAGGGCGAGAAGGCAGATCCGGTGAGAAGATCATCAAGGACCGCATCGAAACCC 1200
consensus_6117#1 AGTAGCAAGGGCGAGAAGGCAGATCCGGTGAGAAGATCATCAAGGACCGCATCGAAACCC 395
************************************************************
consensus_6117#0 CGCCAGGTAAATAAATTAAAAGAAAGATAGCAAGAGATGAAGAGACTCGCTGATGTTCGC 1260
consensus_6117#1 CGCCAGGTAAATAAATTAAAAGAAAGATAGCAAGAGATGAAGAAACTCGCTGATGTTCGC 455
******************************************* ****************
consensus_6117#0 AAAGATCATTTTGGTGTGTGTATAGCTTTAGCTTTAGATGCTCTCCGATGGCCATATTGG 1320
consensus_6117#1 AAAGATCATTTTGGTGTGTGTATAGCTTTAGCTTTAGATGCTCTCCGATGGCCATATTGG 515
************************************************************
consensus_6117#0 TGAAATCCTTGTAGCCTTGATTAGTGAGTTCTTTTCTCTGTGTCTTGTGCGCTACTGTAC 1380
consensus_6117#1 TGAAATCCTTGTAGCCTTGATTAGTGAGTTCTTTTCTCTGTGTCTTGTGCGCTACTGTAC 575
************************************************************
consensus_6117#0 CAGATTATTCAAAGATGCCCTCTTGGAAATTGGAAGGTGTAATCGTTCCATACTGGGCAA 1440
consensus_6117#1 CAGATTATTCAAAGATGCCCTCTTGGAAATTGGAAGGTGTAATCGTTCCATACTGGGCAA 635
************************************************************
consensus_6117#0 AACATATGCTTCTCCTGTGCAACATGAACAATGACATATCTAGGCTATGTTGCTCGTGTC 1500
consensus_6117#1 AACATATGCTTCTCCTGTGCAACATGAACAATGACATATCTAGGCTAAAAAA---AAAAA 692
***********************************************
consensus_6117#0 AAACCACCACCTAGGTTATCTTTTTTTATTTTTTTTTAAGACGGAAGAAGTAAGGATGAA 1560
consensus_6117#1 AAA--------------------------------------------------------- 695
***
consensus_6117#0 TGTATACACACATGCTTGTCTATCATTCTTAAGATTTGAGTCTCTTGGGGACAGAGAGTA 1620
consensus_6117#1 ------------------------------------------------------------
consensus_6117#0 ATCCATAGATT 1631
consensus_6117#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||