These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6120#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1367 fasta sequence [CAGCAAGGAGAACACCGTGCACGAGCTGGGTACGGCCGCGGCGAGGGGCCCGTGGGAGCCGGCGAGGCGGCCGAGGCGGAGCTCATCGGGGGGGTCGTCGTCGCCGGAGAACGCCGGGAGCACCAGAGGATCGGCCGTGCTCAGGGACATGATGACGCGGAGGAAGGAGGAGCCCGAGAAGGAGGAGGCGGCGCACCGCGCGCGCATGCTCGCCGCGCGCTTGCTCCAGTGGCGCTTCGCCAACGCCCGCATGGAGAAGGCCATGGCCCGCGCCACCGCCGCCGCCGAGAACAAGCTGTTCTACACGTGGCTGCGGGTGGCGGAGCTCCGGAACATCCAGGCGGCGAAGCGGATCGTGGCGCAGCGGCGGCGGCAGAAGCTGAAGCTGGCGAGGCTGCTCCGGCCGCAGCTCTCGCTGCTCGCGTCGTGGGACTCCCTCGCCAAGCCGCACGCCGACGCCGTCGACGACCTCGGCGCCGTCCTCGCCGCCGCCTGCACCGCGCTCCCCTTAGCCGACGGCGCCCAAGGCGACATGGAGAGCTTGCACGAAGCCATGTTCGCGTGCGTGGGCACGGTGAACGACATCGAAGCCAACGCCGACATGTTCTTCGCCACGGCTGGGGTGACGAGCAGCACGCTGGAAGAACTGTCGACGACGATAAAGCAGGAGGTGGAGGGCCTGCAGGAAGCCATGAAGCTGGCAAGGATTGTCACTAGCTTGCAGGTGCAGGAAGTGAGCCTCCGGGCAAACTTGATTCAGATTCAGGCAAAGCAGAAGGTTGACATGGGAGCATCTGTCCCGGCGATTGCAACTTCTGGTTGGTGTTTCTGATCATCAAAGTACACGGAGATGGAGCAGAGTGTCAATCACTCGCCCACTTATATAAATTAAGATGCAAAGAGTACTAATGCTAGTACCAGCGTCACGGACTGACCGGTGATCTGAGCCGACATTACTGATGTTTTTATGTATATGTTCGTGCCTGAAACAAGTAAATTAAAACAAAAAATTAGACGATGACCAAGAAATTAAAGATACATGGTCCCCTGGTTGGCCGGTCGCATTACTTTCCCAGGTAAATGTTCAGTTTGTTGGAAGGGCACTAATTTGTTGGTCTTTTCATGTTCATGAATGTTAAGTTGATGGATGGATGTAATTCGGTTTGATTAACAGTGTATATATGTATCTTACGTATATTTAAGGGCGTTGGTGTTCATGTTGGTGTGTAGAATTGAATATCACAGTTTGTGGATAGAGATTGAGTTATTGAGGTGTATGCAATATGCATATTCAGTGTTCACAAACTGTATATCAATTATTCCTTCAAGGGCTTGTCCTTTGAGTTACCCAAGAGTCAACAATGATA] [+] EMBL AK120846 [CAGCAAGGAGAACACCGTGCACGAGCTGGGTACGGCCGCGGCGAGGGGCCCGTGGGAGCCGGCGAGGCGGCCGAGGCGGAGCTCATCGGGGGGGTCGTCGTCGCCGGAGAACGCCGGGAGCACCAGAGGATCGGCCGTGCTCAGGGACATGATGACGCGGAGGAAGGAGGAGCCCGAGAAGGAGGAGGCGGCGCACCGCGCGCGCATGCTCGCCGCGCGCTTGCTCCAGTGGCGCTTCGCCAACGCCCGCATGGAGAAGGCCATGGCCCGCGCCACCGCCGCCGCCGAGAACAAGCTGTTCTACACGTGGCTGCGGGTGGCGGAGCTCCGGAACATCCAGGCGGCGAAGCGGATCGTGGCGCAGCGGCGGCGGCAGAAGCTGAAGCTGACGAGGCTGCTCCGGCCGCAGCTCTCGCTGCTCGCGTCGTGGGACTCCCTCGCCAAGCCGCACGCCGACGCCGTCGACGACCTCGGCGCCGTCCTCGCCGCCGCCTGCACCGCGCTCCCCTTAGCCGACGGCGCCCAAGGCGACATGGAGAGCTTGCACGAAGCCATGTTCGCGTGCGTGGGCACGGTGAACGACATCGAAGCCAACGCCGACATGTTCTTCGCCACGGCTGGGGTGACGAGCAGCACGCTGGAAGAACTGTCGACGACGATAAAGCAGGAGGTGGAGGGCCTGCAGGAAGCCATGAAGCTGGCAAGGATTGTCACTAGCTTGCAGGTGCAGGAAGTGAGCCTCCGGGCAAACTTGATTCAGATTCAGGCAAAGCAGAAGGTTGACATGGGAGCATCTGTCCCGGCGATTGCAACTTCTGGTTGGTGTTTCTGATCATCAAAGTACACGGAGATGGAGCAGAGTGTCAATCACTCGCCCACTTATATAAATTAAGATGCAAAGAGTACTAATGCTAGTACCAGCGTCACGGACTGACCGGTGATCTGAGCCGACATTACTGATGTTTTTATGTATATGTTCGTGCCTGAAACAAGTAAATTAAAACAAAAAATTAGACGATGACCAAGAAATTAAAGATACATGGTCCCCTGGTTGGCCGGTCGCATTACTTTCCCAGGTAAATGTTCAGTTTGTTGGAAGGGCACTAATTTGTTGGTCTTTTCATGTTCATGAATGTTAAGTTGATGGATGGATGTAATTCGGTTTGATTAACAGTGTATATATGTATCTTACGTATATTTAAGGGCGTTGGTGTTCATGTTGGTGTGTAGAATTGAATATCACAGTTTGTGGATAGAGATTGAGTTATTGAGGTGTATGCAATATGCATATTCAGTGTTCACAAACTGTATATCAATTATTCCTTCAAGGGCTTGTCCTTTGAGTTACCCAAGA ] [+] EMBL AK059811 [ GCGCGCTTGCTCCAGTGGCGCTTCGCCAACGCCCGCATGGAGAAGGCCATGGCCCGCGCCACCGCCGCCGCCGAGAACAAGCTGTTCTACACGTGGCTGCGGGTGGCGGAGCTCCGGAACATCCAGGCGGCGAAGCGGATCGTGGCGCAGCGGCGGCGGCAGAAGCTGAAGCTGGCGAGGCTGCTCCGGCCGCAGCTCTCGCTGCTCGCGTCGTGGGACTCCCTCGCCAAGCCGCACGCCGACGCCGTCGACGACCTCGGCGCCGTCCTCGCCGCCGCCTGCACCGCGCTCCCCTTAGCCGACGGCGCCCAAGGCGACATGGAGAGCTTGCACGAAGCCATGTTCGCGTGCGTGGGCACGGTGAACGACATCGAAGCCAACGCCGACATGTTCTTCGCCACGGCTGGGGTGACGAGCAGCACGCTGGAAGAACTGTCGACGACGATAAAGCAGGAGGTGGAGGGCCTGCAGGAAGCCATGAAGCTGGCAAGGATTGTCACTAGCTTGCAGGTGCAGGAAGTGAGCCTCCGGGCAAACTTGATTCAGATTCAGGCAAAGCAGAAGGTTGACATGGGAGCATCTGTCCCGGCGATTGCAACTTCTGGTTGGTGTTTCTGATCATCAAAGTACACGGAGATGGAGCAGAGTGTCAATCACTCGCCCACTTATATAAATTAAGATGCAAAGAGTACTAATGCTAGTACCAGCGTCACGGACTGACCGGTGATCTGAGCCGACATTACTGATGTTTTTATGTATATGTTCGTGCCTGAAACAAGTAAATTAAAACAAAAAATTAGACGATGACCAAGAAATTAAAGATACATGGTCCCCTGGTTGGCCGGTCGCATTACTTTCCCAGGTAAATGTTCAGTTTGTTGGAAGGGCACTAATTTGTTGGTCTTTTCATGTTCATGAATGTTAAGTTGATGGATGGATGTAATTCGGTTTGATTAACAGTGTATATATGTATCTTACGTATATTTAAGGGCGTTGGTGTTCATGTTGGTGTGTAGAATTGAATATCACAGTTTGTGGATAGAGATTGAGTTATTGAGGTGTATGCAATATGCATATTCAGTGTTCACAAACTGTATATCAATTATTCCTTCAAGGGCTTGTCCTTTGAGTTACCCAAGAGTCAACAATGATA] [+] EMBL BE041011 [ TCCAGTGGCGCTTCGCCAACGCCCGCATGGAGAAGGCCATGGCCCGCGCCACCGCCGCCGCCGAGAACAAGCTGTTCTACACGTGGCTGCGGGTGGCGGAGCTCCGGAACATCCAGGCGGCGAAGCGGATCGTGGCGCAGCGGCGGCGGCAGAAGCTGAAGCTGGCGAGGCTGCTCCGGCCGCAGCTCTCGCTGCTCGCGTCGTGGGACTCCCTCGCCAAGCCGCACGCCGACGCCGTCGACGACCTCGGCGCCGTCCTCGCCGCCGCCTGCACCGCGCTCCCCTTAGCCGACGGCGCCCAAGGCGACATGGAGAGCTTGCACGAAGCCATGTTCGCGTGCGTGGGCACGGTGAACGACATCGAAGCCAACGCCGACATGTTCTTCGCCACGGCTGGGGTGACGAGCAGCACGCTGGAAGAACTGTCGACGACGATAAAGCAGGAGGTGGAGGGCCTGCAGGAAGCCATGAAGCTGGCAAGGATTGTCACTAGCTTGCAGGTGCAGGAAGTGAGCCTCCGGGCAAACTTGATTCAGATTCAGGCAAAGCAGAAGGTTGACATGGGAGCATCTGTCCCGGGGATTGCAACTTCTGGTTGGGGGTTCTGATCATCAAAGTACACGGAGATGGAGCAGAGTGTCAATCACTCGGCCA TTATATAAATTAAGATGCAAAGAGTACTAATGCTAGTACCAGCGTCACGGACTGACCGGTGATCTGAGCCGGC TTTCTGATG TTTTATTGATATGTCCG GCCCTAAACAGGT AATTAA ] consensusID : consensus_6120#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [AAATTAAAACAAAAAATTAGACGATGACCCAGAAATTAAAGATACATGGTCCCCTGGTTGGCCGGTCGCATTACTTTCCCAGGTAAATGTTCAGTTTGTTGGAAGGGCACTAATTTGTTGGTCTTTTCATGTTCATGAATGTTAAGTTGATGGATGGATGTAATTCGGTTTGATTAACAGTGTATATATGTATCTTACGTATATTTAAGGGCGTTGGTGTTCAAAAAAAAAAAAAA] [-] EMBL CA759056 [AAATTAAAACAAAAAATTAGACGATGACCCAGAAATTAAAGATACATGGTCCCCTGGTTGGCCGGTCGCATTACTTTCCCAGGTAAATGTTCAGTTTGTTGGAAGGGCACTAATTTGTTGGTCTTTTCATGTTCATGAATGTTAAGTTGATGGATGGATGTAATTCGGTTTGATTAACAGTGTATATATGTATCTTACGTATATTTAAGGGCGTTGGTGTTCAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6120#0 CAGCAAGGAGAACACCGTGCACGAGCTGGGTACGGCCGCGGCGAGGGGCCCGTGGGAGCC 60 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 GGCGAGGCGGCCGAGGCGGAGCTCATCGGGGGGGTCGTCGTCGCCGGAGAACGCCGGGAG 120 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 CACCAGAGGATCGGCCGTGCTCAGGGACATGATGACGCGGAGGAAGGAGGAGCCCGAGAA 180 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 GGAGGAGGCGGCGCACCGCGCGCGCATGCTCGCCGCGCGCTTGCTCCAGTGGCGCTTCGC 240 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 CAACGCCCGCATGGAGAAGGCCATGGCCCGCGCCACCGCCGCCGCCGAGAACAAGCTGTT 300 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 CTACACGTGGCTGCGGGTGGCGGAGCTCCGGAACATCCAGGCGGCGAAGCGGATCGTGGC 360 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 GCAGCGGCGGCGGCAGAAGCTGAAGCTGGCGAGGCTGCTCCGGCCGCAGCTCTCGCTGCT 420 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 CGCGTCGTGGGACTCCCTCGCCAAGCCGCACGCCGACGCCGTCGACGACCTCGGCGCCGT 480 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 CCTCGCCGCCGCCTGCACCGCGCTCCCCTTAGCCGACGGCGCCCAAGGCGACATGGAGAG 540 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 CTTGCACGAAGCCATGTTCGCGTGCGTGGGCACGGTGAACGACATCGAAGCCAACGCCGA 600 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 CATGTTCTTCGCCACGGCTGGGGTGACGAGCAGCACGCTGGAAGAACTGTCGACGACGAT 660 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 AAAGCAGGAGGTGGAGGGCCTGCAGGAAGCCATGAAGCTGGCAAGGATTGTCACTAGCTT 720 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 GCAGGTGCAGGAAGTGAGCCTCCGGGCAAACTTGATTCAGATTCAGGCAAAGCAGAAGGT 780 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 TGACATGGGAGCATCTGTCCCGGCGATTGCAACTTCTGGTTGGTGTTTCTGATCATCAAA 840 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 GTACACGGAGATGGAGCAGAGTGTCAATCACTCGCCCACTTATATAAATTAAGATGCAAA 900 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 GAGTACTAATGCTAGTACCAGCGTCACGGACTGACCGGTGATCTGAGCCGACATTACTGA 960 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 TGTTTTTATGTATATGTTCGTGCCTGAAACAAGTAAATTAAAACAAAAAATTAGACGATG 1020 consensus_6120#1 ----------------------------------AAATTAAAACAAAAAATTAGACGATG 26 ************************** consensus_6120#0 ACCAAGAAATTAAAGATACATGGTCCCCTGGTTGGCCGGTCGCATTACTTTCCCAGGTAA 1080 consensus_6120#1 ACCCAGAAATTAAAGATACATGGTCCCCTGGTTGGCCGGTCGCATTACTTTCCCAGGTAA 86 *** ******************************************************** consensus_6120#0 ATGTTCAGTTTGTTGGAAGGGCACTAATTTGTTGGTCTTTTCATGTTCATGAATGTTAAG 1140 consensus_6120#1 ATGTTCAGTTTGTTGGAAGGGCACTAATTTGTTGGTCTTTTCATGTTCATGAATGTTAAG 146 ************************************************************ consensus_6120#0 TTGATGGATGGATGTAATTCGGTTTGATTAACAGTGTATATATGTATCTTACGTATATTT 1200 consensus_6120#1 TTGATGGATGGATGTAATTCGGTTTGATTAACAGTGTATATATGTATCTTACGTATATTT 206 ************************************************************ consensus_6120#0 AAGGGCGTTGGTGTTCATGTTGGTGTGTAGAATTGAATATCACAGTTTGTGGATAGAGAT 1260 consensus_6120#1 AAGGGCGTTGGTGTTCAAAAAAAAAAAAAA------------------------------ 236 ***************** * consensus_6120#0 TGAGTTATTGAGGTGTATGCAATATGCATATTCAGTGTTCACAAACTGTATATCAATTAT 1320 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 TCCTTCAAGGGCTTGTCCTTTGAGTTACCCAAGAGTCAACAATGATA 1367 consensus_6120#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||