These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1535 fasta sequence [CAACTTTGAATACCCTTCGCTCAAATCCTGGATCCGCCACTGGAGACGCTCATCTGCTCGGTTTGGTTCGAAGATGTTTGCTGCCGCTAGGAAGAAGGCCGTTAACGCGCTCTTGTGAGTCACACCATATACCTCAAGATCGTTCTCGGCATACCACTTGTTGATGCCATGCCACTCAAGTTGGCAGCGCCTCTGGAAACACTTGAAATCAGCTTTTGCCATGTTGTGATAGAGATCATTGTTCACGAGTGGCAGCCGATCCACACATCTCTGCCGGCGCCATATTGCTCCAGATACATTCTTGTTTCAACACGTGGCAGACTTGCTTTCCAGGGGAAGTCTAGGGCGTAACCAATTTGGAGAGACACTATAGCCATGCAACCGGAGTAGACGAAAAGCCATTGACCCGGTATCAATATCCTTCACAGAGCTGTGCCAGTTGTATGTCACGCCTTCCTTAGTCCAATGCCTGAAGGTGTATTCTAAGCAGTACTCATCAATTTCAGTTTTGAAGTAGTAAGATATGCCTAGCCGCTCCAACCGGTCGACGTCATTTGGTCGATTCACAGAAAGGTTAATGCTACAATAATTTTTTTCATATCTGGGGCAGTATGAATTGAATGCATATCTGGACAAATCCGATTGAATAATGTTACGGCTATCAAAAATGATATCCATTTTTTTCAATTCTGGAACTCCCCCATGGAATTTGCTAACAATTCCATCAAGGAACTCGAGACATTTCTTGTCGCCCGTTTGCATCAAAACATAGGCCGTTGCAGCGGGTGAGGATAGGAAGGATCCATCTGAAAGTTGGAGCTTGAGGAGCCTCTTCCAGTCCAAGCCTCGCAGTCCCTCTATGCTAAGAAGCAAACTTGTTGGTAGGGAGTGAAGTATTTCTCTTGGGATCTTCTTAAGCTTTAGCTCCCTTTGGGCATATATCTTGTGCAAAGCAGGGTCATCATAAGGGATGTCAAGAGCCAAGTCCTTGGCTATCTCTAAAAGTGAGGGGAAGGTGATCTCAAAACCAACTGGCATCCATGCCTCTTCCTCTTGGGCCAGCCTCCATATATTTTCCCGAATAAACGACAAACCTTTCTCACGCTTGTCACCATGAACCTTCCACTCCATCAGCGCAATCACACAAGCTAGGGTGTTGAGGAGCCTATCATGAACTAGAAAGCACAAGTCATCACCCCATGAACCATCTGGCAGCTGATTGTGAGAGATCCAATCAATGGTCGAGGGGAATTGTGGGCTGTCGCTGCCGTTATGATTCTTCACAAGTGCGACCCACGCGGTGTCATAGGCAGAAGCACTTATCTCCCCATCGCCCATTGTCCTTAGCATTACTCTGATGGTATTGACCATTTCTTCCATGTCCCGCGGTTCGTCCACGTGGACGCGGAGCGTGCATACGCGTATGATGATCTGGTCGCCGGCGATCCCACGCCGGGGACCACCGCCGGCGGTCGAGCAACGCCAAGTGCGGCGGTGCATTTGCACAAATTAGTATCTGCATGGGCAATGTCCGA] [+] EMBL CB667338 [CAACTTTGAATACCCTTCGCTCAAATCCTGGATCCGCCACTGGAGACGCTCATCTGCTCGGTTTGGTTCGAAGATGTTTGCTGCCGCTAGGAAGAAGGCCGTTAACGCGCTCTTGTGAGTCACACCATATACCTCAAGATCGTTCTCGGCATACCACTTGTTGATGCCATGCCACTCAAGTTGGCAGCGCCTCTGGAAACACTTGAAATCAGCTTTTGCCATGTTGTGATAGAGATCATTGTTCACGAGTGGCAGCCGATCCACACATCTCTGCCGGCGCCATATTGCTCCAGATACATTCTTGTTTCAACACGTGGCAGACTTGCTTTCCAGGGGAAGTCTAGGGCGTAACCAATTTGGAGAGACACTATAGCCATGCAACCGGAGTAGACGAAAAGCCATTGACCCGGTATCAATATCCTTCACAGAGCTGTGCCAGTTGTATGTCACGCCTTCCTTAGTCCAATGCCTGAAGGTGTATTCTAAGCAGTACTCATCAATTTCAGTTTTGAAGTAGTAAGATATGCCTAGCCGCTCCAACCGGTCGACGTCATTTGGTCGATTCACAGAAAGGTTAATGCTACAATAATTTTTTTCATATCTGGGGCAGTATGAATTGAATGCATATCTGGACAAATCCGATTGAATAATGTTACGGCTATCAAAAATGATATCCATTTTTTTCAATTCTGGAACTCCCCCATGGAATTTGCTAACAATTCCATCAAGGAACTCGAGACATTTCTTGTCGCCCGTTTGCATCAAAACATAGGCC ] [-] EMBL CB671672 [ ttatttacCTCCCCCAT GAATTTGCTAAC ATTCCATCAAGGAACTCGAGACATTTCTTGTCGCCCGTTTGCATCAAAACATAGGCCGTTGCAGCGGGTGAGGATAGGAAGGATCCATCTGAAAGTTGGAGCTTGAGGAGCCTCTTCCAGTCCAAGCCTCGCAGTCCCTCTATGCTAAGAAGCAAACTTGTTGGTAGGGAGTGAAGTATTTCTCTTGGGATCTTCTTAAGCTTTAGCTCCCTTTGGGCATATATCTTGTGCAAAGCAGGGTCATCATAAGGGATGTCAAGAGCCAAGTCCTTGGCTATCTCTAAAAGTGAGGGGAAGGTGATCTCAAAACCAACTGGCATCCATGCCTCTTCCTCTTGGGCCAGCCTCCATATATTTTCCCGAATAAACGACAAACCTTTCTCACGCTTGTCACCATGAACCTTCCACTCCATCAGCGCAATCACACAAGCTAGGGTGTTGAGGAGCCTATCATGAACTAGAAAGCACAAGTCATCACCCCATGAACCATCTGGCAGCTGATTGTGAGAGATCCAATCAATGGTCGAGGGGAATTGTGGGCTGTCGCTGCCGTTATGATTCTTCACAAGTGCGACCCACGCGGTGTCATAGGCAGAAGCACTTATCTCCCCATCGCCCATTGTCCTTAGCATTACTCTGATGGTATTGACCATTTCTTCCATGTCCCGCGGTTCGTCCACGTGGACGCGGAGCGTGCATACGCGTATGATGATCTGGTCGCCGGCGATCCCACGCCGGGGACCACCGCCGGCGGTCGAGCAACGCCAAGTGCGGCGGTGCATTTGCACAAATTAGTATCTGCATGGGCAATGTCCGA] consensusID : consensus_6124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1104 fasta sequence [CTGGACAAATCCGATTGAATAATGTTACGGCTATCAAAAATGATATCCATTTTTTTCAATTCTGGAACTGTACAGAAACGAACTTTGCATCAAATAGGTTCTATTCAACTAGAAATTAAATGAAGTCTCGAATGAGAATTTATTTATAATTGAAAGATCATTATTTACCTCCCCCATGGAATTTGCTAACAATTCCATCAAGGAACTCGAGACATTTCTTGTCGCCCGTTTGCATCAAAACATAGGCCGTTGCAGCGGGTGAGGATAGGAAGGATCCATCTGAAAGTTGGAGCTTGAGGAGCCTCTTCCAGTCCAAGCCTCGCAGTCCCTCTATGCTAAGAAGCAAACTTGTTGGTAGGGAGTGAAGTATTTCTCTTGGGATCTTCTTAAGCTTTAGCTCCCTTTGGGCATATATCTTGTGCAAAGCAGGGTCATCATAAGGGATGTCAAGAGCCAAGTCCTTGGCTATCTCTAAAAGTGAGGGGAAGGTGATCTCAAAACCAACTGGCATCCATGCCTCTTCCTCTTGGGCCAGCCTCCATATATTTTCCCGAATAAACGACAAACCTTTCTCACGCTTGTCACCATGAACCTTCCACTCCATCAGCGCAATCACACAAGCTAGGGTGTTGAGGAGCCTATCATGAACTAGAAAGCACAAGTCATCACCCCATGAACCATCTGGCAGCTGATTGTGAGAGATCCAATCAATGGTCGAGGGGAATTGTGGGCTGTCGCTGCCGTTATGATTCTTCACAAGTGCGAC-CCACGCGGTGTCATAGGCAGAAGCACTTATCTCCCCATCGCCCATTGTCCTTAGCATTACTCTGATGGTATTGACCATTTCTTCCATGTCCCGCGGTTCGTCTTTTCCACCGCTCCTCCTGTCAACTGTTTCTTGTGTTTCTTTGGCTTTGCAATATACTATTCCCTTTGATTGCTCTTTATCACGTGGACGCGGAGCGTGCATACGCGTATGATGATCTGGTCGCCGGCGATCCCACGCCGGGGACCA-CCGCCGGCGGTCGAGCAACGCCAAGTGCGGCGGTGCATTTGCACAAATTAGTATCTGCATGGGCAATATCCGAGAAAGTCCGTATGGTC] [-] EMBL AK066759 [CTGGACAAATCCGATTGAATAATGTTACGGCTATCAAAAATGATATCCATTTTTTTCAATTCTGGAACTGTACAGAAACGAACTTTGCATCAAATAGGTTCTATTCAACTAGAAATTAAATGAAGTCTCGAATGAGAATTTATTTATAATTGAAAGATCATTATTTACCTCCCCCATGGAATTTGCTAACAATTCCATCAAGGAACTCGAGACATTTCTTGTCGCCCGTTTGCATCAAAACATAGGCCGTTGCAGCGGGTGAGGATAGGAAGGATCCATCTGAAAGTTGGAGCTTGAGGAGCCTCTTCCAGTCCAAGCCTCGCAGTCCCTCTATGCTAAGAAGCAAACTTGTTGGTAGGGAGTGAAGTATTTCTCTTGGGATCTTCTTAAGCTTTAGCTCCCTTTGGGCATATATCTTGTGCAAAGCAGGGTCATCATAAGGGATGTCAAGAGCCAAGTCCTTGGCTATCTCTAAAAGTGAGGGGAAGGTGATCTCAAAACCAACTGGCATCCATGCCTCTTCCTCTTGGGCCAGCCTCCATATATTTTCCCGAATAAACGACAAACCTTTCTCACGCTTGTCACCATGAACCTTCCACTCCATCAGCGCAATCACACAAGCTAGGGTGTTGAGGAGCCTATCATGAACTAGAAAGCACAAGTCATCACCCCATGAACCATCTGGCAGCTGATTGTGAGAGATCCAATCAATGGTCGAGGGGAATTGTGGGCTGTCGCTGCCGTTATGATTCTTCACAAGTGCGAC CCACGCGGTGTCATAGGCAGAAGCACTTATCTCCCCATCGCCCATTGTCCTTAGCATTACTCTGATGGTATTGACCATTTCTTCCATGTCCCGCGGTTCGTCTTTTCCACCGCTCCTCCTGTCAACTGTTTCTTGTGTTTCTTTGGCTTTGCAATATACTATTCCCTTTGATTGCTCTTTATCACGTGGACGCGGAGCGTGCATACGCGTATGATGATCTGGTCGCCGGCGATCCCACGCCGGGGACCA CCGCCGGCGGTCGAGCAACGCCAAGTGCGGCGGTGCATTTGCACAAATTAGTATCTGCATGGGCAATATCCGAGAAAGTCCGTATGGTC] [-] EMBL CB667337 [ TCATCACCCCATGAACCATTTGGCAGCTGATTGTGAGAGATCCAATCAATGGTAGAGGGGAATTGTGGGCTGTCGCTGCCGTTATGATTCTTCACAAGTGCAACTCCACGCGGTGTCATAGGCAGAAGCACTTATCTCCCCATCGCCCATTGTCCTTAGCATTACTATGATGGTATTGACCATTTCTTCCATGTCCCGCGGTTCGTGTTTTCCACCGCTCCTCCTGTCAACTGTTTGTTGTGTTTCTTTGGCTTTGCAATATACTATTCCCTTTGATTGCTCTTTATCTCGTGGACGCGGAGCGTGCATACGCGTATGATGATTTGGTCGCCGGCGATCCCACGCCGGGGACCATCCGCCGGCGGTCGAGCAACGCCAAGTGCGGCGGTGCATTGGGACAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6124#0 CAACTTTGAATACCCTTCGCTCAAATCCTGGATCCGCCACTGGAGACGCTCATCTGCTCG 60 consensus_6124#1 ------------------------------------------------------------ consensus_6124#0 GTTTGGTTCGAAGATGTTTGCTGCCGCTAGGAAGAAGGCCGTTAACGCGCTCTTGTGAGT 120 consensus_6124#1 ------------------------------------------------------------ consensus_6124#0 CACACCATATACCTCAAGATCGTTCTCGGCATACCACTTGTTGATGCCATGCCACTCAAG 180 consensus_6124#1 ------------------------------------------------------------ consensus_6124#0 TTGGCAGCGCCTCTGGAAACACTTGAAATCAGCTTTTGCCATGTTGTGATAGAGATCATT 240 consensus_6124#1 ------------------------------------------------------------ consensus_6124#0 GTTCACGAGTGGCAGCCGATCCACACATCTCTGCCGGCGCCATATTGCTCCAGATACATT 300 consensus_6124#1 ------------------------------------------------------------ consensus_6124#0 CTTGTTTCAACACGTGGCAGACTTGCTTTCCAGGGGAAGTCTAGGGCGTAACCAATTTGG 360 consensus_6124#1 ------------------------------------------------------------ consensus_6124#0 AGAGACACTATAGCCATGCAACCGGAGTAGACGAAAAGCCATTGACCCGGTATCAATATC 420 consensus_6124#1 ------------------------------------------------------------ consensus_6124#0 CTTCACAGAGCTGTGCCAGTTGTATGTCACGCCTTCCTTAGTCCAATGCCTGAAGGTGTA 480 consensus_6124#1 ------------------------------------------------------------ consensus_6124#0 TTCTAAGCAGTACTCATCAATTTCAGTTTTGAAGTAGTAAGATATGCCTAGCCGCTCCAA 540 consensus_6124#1 ------------------------------------------------------------ consensus_6124#0 CCGGTCGACGTCATTTGGTCGATTCACAGAAAGGTTAATGCTACAATAATTTTTTTCATA 600 consensus_6124#1 CTGGACAAATCCGATTGAATAATGTTACGGCTATCAAAAATGATATCCATTTTTTTCAAT 60 * ** * * * *** ** * ** * * ********** consensus_6124#0 TCTGGGGCAGTAT-GAATTGAATGCATATCTGGACAAATCCGATTGAAT---AATGTTAC 656 consensus_6124#1 TCTGGAACTGTACAGAAACGAACTTTGCATCAAATAGGTTCTATTCAACTAGAAATTAAA 120 ***** * *** *** *** * * * * *** ** ** * * consensus_6124#0 GGCTATCAAAAATGATA-TCCATTTTT--TTCAA------TTCTGGAACTCCCCCATGGA 707 consensus_6124#1 TGAAGTCTCGAATGAGAATTTATTTATAATTGAAAGATCATTATTTACCTCCCCCATGGA 180 * ** ***** * * **** * ** ** ** * * ************ consensus_6124#0 ATTTGCTAACAATTCCATCAAGGAACTCGAGACATTTCTTGTCGCCCGTTTGCATCAAAA 767 consensus_6124#1 ATTTGCTAACAATTCCATCAAGGAACTCGAGACATTTCTTGTCGCCCGTTTGCATCAAAA 240 ************************************************************ consensus_6124#0 CATAGGCCGTTGCAGCGGGTGAGGATAGGAAGGATCCATCTGAAAGTTGGAGCTTGAGGA 827 consensus_6124#1 CATAGGCCGTTGCAGCGGGTGAGGATAGGAAGGATCCATCTGAAAGTTGGAGCTTGAGGA 300 ************************************************************ consensus_6124#0 GCCTCTTCCAGTCCAAGCCTCGCAGTCCCTCTATGCTAAGAAGCAAACTTGTTGGTAGGG 887 consensus_6124#1 GCCTCTTCCAGTCCAAGCCTCGCAGTCCCTCTATGCTAAGAAGCAAACTTGTTGGTAGGG 360 ************************************************************ consensus_6124#0 AGTGAAGTATTTCTCTTGGGATCTTCTTAAGCTTTAGCTCCCTTTGGGCATATATCTTGT 947 consensus_6124#1 AGTGAAGTATTTCTCTTGGGATCTTCTTAAGCTTTAGCTCCCTTTGGGCATATATCTTGT 420 ************************************************************ consensus_6124#0 GCAAAGCAGGGTCATCATAAGGGATGTCAAGAGCCAAGTCCTTGGCTATCTCTAAAAGTG 1007 consensus_6124#1 GCAAAGCAGGGTCATCATAAGGGATGTCAAGAGCCAAGTCCTTGGCTATCTCTAAAAGTG 480 ************************************************************ consensus_6124#0 AGGGGAAGGTGATCTCAAAACCAACTGGCATCCATGCCTCTTCCTCTTGGGCCAGCCTCC 1067 consensus_6124#1 AGGGGAAGGTGATCTCAAAACCAACTGGCATCCATGCCTCTTCCTCTTGGGCCAGCCTCC 540 ************************************************************ consensus_6124#0 ATATATTTTCCCGAATAAACGACAAACCTTTCTCACGCTTGTCACCATGAACCTTCCACT 1127 consensus_6124#1 ATATATTTTCCCGAATAAACGACAAACCTTTCTCACGCTTGTCACCATGAACCTTCCACT 600 ************************************************************ consensus_6124#0 CCATCAGCGCAATCACACAAGCTAGGGTGTTGAGGAGCCTATCATGAACTAGAAAGCACA 1187 consensus_6124#1 CCATCAGCGCAATCACACAAGCTAGGGTGTTGAGGAGCCTATCATGAACTAGAAAGCACA 660 ************************************************************ consensus_6124#0 AGTCATCACCCCATGAACCATCTGGCAGCTGATTGTGAGAGATCCAATCAATGGTCGAGG 1247 consensus_6124#1 AGTCATCACCCCATGAACCATCTGGCAGCTGATTGTGAGAGATCCAATCAATGGTCGAGG 720 ************************************************************ consensus_6124#0 GGAATTGTGGGCTGTCGCTGCCGTTATGATTCTTCACAAGTGCGACCCACGCGGTGTCAT 1307 consensus_6124#1 GGAATTGTGGGCTGTCGCTGCCGTTATGATTCTTCACAAGTGCGACCCACGCGGTGTCAT 780 ************************************************************ consensus_6124#0 AGGCAGAAGCACTTATCTCCCCATCGCCCATTGTCCTTAGCATTACTCTGATGGTATTGA 1367 consensus_6124#1 AGGCAGAAGCACTTATCTCCCCATCGCCCATTGTCCTTAGCATTACTCTGATGGTATTGA 840 ************************************************************ consensus_6124#0 CCATTTCTTCCATGTCCCGCGGTTCGTC-------------------------------- 1395 consensus_6124#1 CCATTTCTTCCATGTCCCGCGGTTCGTCTTTTCCACCGCTCCTCCTGTCAACTGTTTCTT 900 **************************** consensus_6124#0 ------------------------------------------------CACGTGGACGCG 1407 consensus_6124#1 GTGTTTCTTTGGCTTTGCAATATACTATTCCCTTTGATTGCTCTTTATCACGTGGACGCG 960 ************ consensus_6124#0 GAGCGTGCATACGCGTATGATGATCTGGTCGCCGGCGATCCCACGCCGGGGACCACCGCC 1467 consensus_6124#1 GAGCGTGCATACGCGTATGATGATCTGGTCGCCGGCGATCCCACGCCGGGGACCACCGCC 1020 ************************************************************ consensus_6124#0 GGCGGTCGAGCAACGCCAAGTGCGGCGGTGCATTTGCACAAATTAGTATCTGCATGGGCA 1527 consensus_6124#1 GGCGGTCGAGCAACGCCAAGTGCGGCGGTGCATTTGCACAAATTAGTATCTGCATGGGCA 1080 ************************************************************ consensus_6124#0 ATGTCCGA---------------- 1535 consensus_6124#1 ATATCCGAGAAAGTCCGTATGGTC 1104 ** ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||