These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1556 fasta sequence [CTGTGTTTGTTCGTCGGCCACAGCCTCCCGTTCGTGGGCATCGTGGGAGCCCCGCGCGCCGCACACCCCTCCTCCCGCTCCTACGATCTCCAGACCTTCGCCTTCGCCTCCTCCTCCGCCGCGGCGCTTCGGCTCCCGGTCGCCGGCGATGTGGTCGCGCTGCTCCGCAGGCTCCGCCGTGGCGCTCTGCGGCGGCCGCGGCGGGCACCGCCTGCTGTCCTGCGCCGCGGCGC-----G--GCGGCGCGCGCCTGGAGCGTCCGCCTCCGCGAAGGGCATCCCGCGCTCGGCCCTGCGCGCCAGCGTCACCCCCGAATTCGTCACCGCCGCCCCCGACGAGGCCGTCGAGGAATCTTCGGTGGAGCGTGAACCGGCGGCAGAGAACAAGCTCAGAAAGCTGGCATGCCCAATCTGCTACTACCCCCTCATAAGCTCGAGCGATCAGTCCGCGCCGGTCAGTGCTGCTTCTAGTTCTAGTCTTGAGTGTTCTACCTGCAAGAAATTTTATCCCAATAGAGGGGATTACTGGGATATGACTGTAGCAGTTGGTTCTACTGAGTACTCTGAATCCACGACAGTGACAACTGAAGTTTTCAGGACTCCGCTGGTATCATTTCTTTATGAGAGGGGATGGCGCCAAAATTTCATTTGGAGTGGTTTCCCAGGCCTAGAGAGAGAGTTTGAAATGGCTCAAACTTATTTGAAACCGACAACTGGAGGGATTATAGTTGATGCAAGTTGTGGAAGTGGCCTGTTTTCAAGATTATTTGTTAAGAGTGAACTATATTCTCTTGTTGTGGCACTAGATTTCTCAGAGAACATGTTGAAGCAGTGCAATGAATATGTCAAGCAGGAAAACATTTCAGATAAGACATTAGCCTTGGCGAGAGCTGATATATCCCGACTCCCTTTTGTGAGCGGTTCAATTGATGCTGTCCATGCAGCTGCTGCGATCCATTGTTGGCCATCCCCAGCTTGTGCTGTTGCAGAAATTAGTCGAGTCCTTAGACCTGGGGGCGTTTTCGTTGCTTCCACTTTCGTTGCAGATATTCTTCCACCAGCTGTACCGGTATTGAGGATAGGACGCCCGTACATCAGCCAATTTACCGGCAGTAATATCTTCTTATCAGAAGCGGAGTTCGAAGATCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAATGTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTGAAAATCATTGATTATGCACTGATTCTCCGCGCCCTTTCTAGTTGGACTAATAGTTTTACCTGAGGGAAATGTGGTATAGAATAGTGAGTACATACATATATTTTTGCTTTACCTAACCATTTTGGTTGCTTGTACCTCAATTTTTTTGTGTATAGGACTCGGCGACTCGGCTCTTGCAATCCTGTAACTTTTGTATATCGACTCATGCTGCTACTAGTAGTATATACAGAGCATAAACAAATTTATTGTGTTCACTATTTATTTAGGTCCCTTTGATTCAAAGAAAATTCATAGGA] [+] EMBL AK120890 [CTGTGTTTGTTCGTCGGCCACAGCCTCCCGTTCGTGGGCATCGTGGGAGCCCCGCGCGCCGCACACCCCTCCTCCCGCTCCTACGATCTCCAGACCTTCGCCTTCGCCTCCTCCTCCGCCGCGGCGCTTCGGCTCCCGGTCGCCGGCGATGTGGTCGCGCTGCTCCGCAGGCTCCGCCGTGGCGCTCTGCGGCGGCCGCGGCGGGCACCGCCTGCTGTCCTGCGCCGCGGCGC G GCGGCGCGCGCCTGGAGCGTCCGCCTCCGCGAAGGGCATCCCGCGCTCGGCCCTGCGCGCCAGCGTCACCCCCGAATTCGTCACCGCCGCCCCCGACGAGGCCGTCGAGGAATCTTCGGTGGAGCGTGAACCGGCGGCAGAGAACAAGCTCAGAAAGCTGGCATGCCCAATCTGCTACTACCCCCTCATAAGCTCGAGCGATCAGTCCGCGCCGGTCAGTGCTGCTTCTAGTTCTAGTCTTGAGTGTTCTACCTGCAAGAAATTTTATCCCAATAGAGGGGATTACTGGGATATGACTGTAGCAGTTGGTTCTACTGAGTACTCTGAATCCACGACAGTGACAACTGAAGTTTTCAGGACTCCGCTGGTATCATTTCTTTATGAGAGGGGATGGCGCCAAAATTTCATTTGGAGTGGTTTCCCAGGCCTAGAGAGAGAGTTTGAAATGGCTCAAACTTATTTGAAACCGACAACTGGAGGGATTATAGTTGATGCAAGTTGTGGAAGTGGCCTGTTTTCAAGATTATTTGTTAAGAGTGAACTATATTCTCTTGTTGTGGCACTAGATTTCTCAGAGAACATGTTGAAGCAGTGCAATGAATATGTCAAGCAGGAAAACATTTCAGATAAGACATTAGCCTTGGCGAGAGCTGATATATCCCGACTCCCTTTTGTGAGCGGTTCAATTGATGCTGTCCATGCAGCTGCTGCGATCCATTGTTGGCCATCCCCAGCTTGTGCTGTTGCAGAAATTAGTCGAGTCCTTAGACCTGGGGGCGTTTTCGTTGCTTCCACTTTCGTTGCAGATATTCTTCCACCAGCTGTACCGGTATTGAGGATAGGACGCCCGTACATCAGCCAATTTACCGGCAGTAATATCTTCTTATCAGAAGCGGAGTTCGAAGATCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAATGTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTGAAAATCATTGATTATGCACTGATTCTCCGCGCCCTTTCTAGTTGGACTAATAGTTTTACCTGAGGGAAATGTGGTATAGAATAGTGAGTACATACATATATTTTTGCTTTACCTAACCATTTTGGTTGCTTGTACCTCAATTTTTTTGTGTATAGGACTCGGCGACTCGGCTCTTGCAATCCTGTAACTTTTGTATATCGACTCATGCTGCTACTAGTAGTATATACAGAGCATAAACAAATTTATTGTGTTCACTATTTATTTAGGTCCCTTTGATTCAAAGAAAATTCATAGGA] [+] EMBL BM422185 [ CCG CTGCTGTCCTGCGCCGCGGCGCCGGCTGCAGCGGCGCGCGCCTGGAGCGTCCGCCTCCGCGAAGGGCATCCCGCGCTCGGCCCTGCGCGCCAGCGTCACCCCCGAATTCGTCACCGCCGCCCCCGACGAGGCCGTCGAGGAATCTTCGG GGAGCGTGAACCGGCGGCAGAGAACAAGCTCAGAAAGCTGGCATGCCCAATCTGCTACTACCCCCTCATAAGCTCGAGCGATCAGTCCGCGCCGGTCAGTGCTGCTTCTAGTTCTAGTCTTGAGTGTTCTACCTGCAAGAAATTTTATCCCAATAGAGGGGATTACTGGGATATGACTGTAGCAG TGGTTCTACTGAGTACTCTGAATCCACGACAGTGACAACTGAAGTTTTCAGGACTCCGCTGGTATCATTTCTTTATGAGAGGGGATGGCGCCAAAATTTCA TTGGAGTGGTTTCCCAGGCCTAGAGAGAGAGTTTGAAATGGCTC ] consensusID : consensus_6129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [CTGTTGCAGAAATTAGTCGAGTCCTTAGACCTGGGGGCGTTTTCGTTGCTTCCACTTTCGTTGCAGATATTCTTCCACCAGCTGNACNGGTATTGAGGATAGGACGCCCGTACATCAGCCAATTTACCGGCAGTAATATCTTCTTATCAGAAGCGGAGTTCGAAGATCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAATGTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTGAAAATCATTGATTATGCACTGATCTCCGCGCCCTTTCTAGTTGGACTAATAGTTTTACCTGAGGGAAATGTGNNATAGAATAGTGAGTACGGACATATATTTTGCTTTANTCGACGGGCTCCGC] [-] EMBL AA754484 [CTGTTGCAGAAATTAGTCGAGTCCTTAGACCTGGGGGCGTTTTCGTTGCTTCCACTTTCGTTGCAGATATTCTTCCACCAGCTGNACNGGTATTGAGGATAGGACGCCCGTACATCAGCCAATTTACCGGCAGTAATATCTTCTTATCAGAAGCGGAGTTCGAAGATCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAATGTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTGAAAATCATTGATTATGCACTGATCTCCGCGCCCTTTCTAGTTGGACTAATAGTTTTACCTGAGGGAAATGTGNNATAGAATAGTGAGTACGGACATATATTTTGCTTTANTCGACGGGCTCCGC] consensusID : consensus_6129#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [CTGTNGCAGAAATTAGTCGAGTCCTTAGACCNGGGGGCGTTTTCGTTGNTTCCACTTTNGTNGNAGAAANNANTCCACCAGCTGTACNGGTATNGAGGATAGGACGCCCGAACATCAGCCAATTTACCGGCAGTAATATNTTCTTATCAGAAGCGGAGTTNGAAGATCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAATGTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTGAAAATCATTGATTATGCANTGATTCTCCGGGCCCTTTCTAGTTGGACTAATAGTTTTACCTGAGGGAAAAAGGTATAGTTAGTGGGGGCACANAGTNGGGTTTNT] [-] EMBL AA754539 [CTGTNGCAGAAATTAGTCGAGTCCTTAGACCNGGGGGCGTTTTCGTTGNTTCCACTTTNGTNGNAGAAANNANTCCACCAGCTGTACNGGTATNGAGGATAGGACGCCCGAACATCAGCCAATTTACCGGCAGTAATATNTTCTTATCAGAAGCGGAGTTNGAAGATCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAATGTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTGAAAATCATTGATTATGCANTGATTCTCCGGGCCCTTTCTAGTTGGACTAATAGTTTTACCTGAGGGAAAAAGGTATAGTTAGTGGGGGCACANAGTNGGGTTTNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6129#0 CTGTGTTTGTTCGTCGGCCACAGCCTCCCGTTCGTGGGCATCGTGGGAGCCCCGCGCGCC 60 consensus_6129#1 ------------------------------------------------------------ consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 GCACACCCCTCCTCCCGCTCCTACGATCTCCAGACCTTCGCCTTCGCCTCCTCCTCCGCC 120 consensus_6129#1 ------------------------------------------------------------ consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 GCGGCGCTTCGGCTCCCGGTCGCCGGCGATGTGGTCGCGCTGCTCCGCAGGCTCCGCCGT 180 consensus_6129#1 ------------------------------------------------------------ consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 GGCGCTCTGCGGCGGCCGCGGCGGGCACCGCCTGCTGTCCTGCGCCGCGGCGCGGCGGCG 240 consensus_6129#1 ------------------------------------------------------------ consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 CGCGCCTGGAGCGTCCGCCTCCGCGAAGGGCATCCCGCGCTCGGCCCTGCGCGCCAGCGT 300 consensus_6129#1 ------------------------------------------------------------ consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 CACCCCCGAATTCGTCACCGCCGCCCCCGACGAGGCCGTCGAGGAATCTTCGGTGGAGCG 360 consensus_6129#1 ------------------------------------------------------------ consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 TGAACCGGCGGCAGAGAACAAGCTCAGAAAGCTGGCATGCCCAATCTGCTACTACCCCCT 420 consensus_6129#1 ------------------------------------------------------------ consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 CATAAGCTCGAGCGATCAGTCCGCGCCGGTCAGTGCTGCTTCTAGTTCTAGTCTTGAGTG 480 consensus_6129#1 ------------------------------------------------------------ consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 TTCTACCTGCAAGAAATTTTATCCCAATAGAGGGGATTACTGGGATATGACTGTAGCAGT 540 consensus_6129#1 ------------------------------------------------------------ consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 TGGTTCTACTGAGTACTCTGAATCCACGACAGTGACAACTGAAGTTTTCAGGACTCCGCT 600 consensus_6129#1 ------------------------------------------------------------ consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 GGTATCATTTCTTTATGAGAGGGGATGGCGCCAAAATTTCATTTGGAGTGGTTTCCCAGG 660 consensus_6129#1 ------------------------------------------------------------ consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 CCTAGAGAGAGAGTTTGAAATGGCTCAAACTTATTTGAAACCGACAACTGGAGGGATTAT 720 consensus_6129#1 ------------------------------------------------------------ consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 AGTTGATGCAAGTTGTGGAAGTGGCCTGTTTTCAAGATTATTTGTTAAGAGTGAACTATA 780 consensus_6129#1 ------------------------------------------------------------ consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 TTCTCTTGTTGTGGCACTAGATTTCTCAGAGAACATGTTGAAGCAGTGCAATGAATATGT 840 consensus_6129#1 ------------------------------------------------------------ consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 CAAGCAGGAAAACATTTCAGATAAGACATTAGCCTTGGCGAGAGCTGATATATCCCGACT 900 consensus_6129#1 ------------------------------------------------------------ consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 CCCTTTTGTGAGCGGTTCAATTGATGCTGTCCATGCAGCTGCTGCGATCCATTGTTGGCC 960 consensus_6129#1 ------------------------------------------------------------ consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 ATCCCCAGCTTGTGCTGTTGCAGAAATTAGTCGAGTCCTTAGACCTGGGGGCGTTTTCGT 1020 consensus_6129#1 --------------CTGTTGCAGAAATTAGTCGAGTCCTTAGACCTGGGGGCGTTTTCGT 46 consensus_6129#2 --------------CTGTNGCAGAAATTAGTCGAGTCCTTAGACCNGGGGGCGTTTTCGT 46 **** ************************** ************** consensus_6129#0 TGCTTCCACTTTCGTTGCAGATATTCTTCCACCAGCTGTACCGGTATTGAGGATAGGACG 1080 consensus_6129#1 TGCTTCCACTTTCGTTGCAGATATTCTTCCACCAGCTGNACNGGTATTGAGGATAGGACG 106 consensus_6129#2 TGNTTCCACTTTNGTNGNAGAAANNANTCCACCAGCTGTACNGGTATNGAGGATAGGACG 106 ** ********* ** * *** * *********** ** ***** ************ consensus_6129#0 CCCGTACATCAGCCAATTTACCGGCAGTAATATCTTCTTATCAGAAGCGGAGTTCGAAGA 1140 consensus_6129#1 CCCGTACATCAGCCAATTTACCGGCAGTAATATCTTCTTATCAGAAGCGGAGTTCGAAGA 166 consensus_6129#2 CCCGAACATCAGCCAATTTACCGGCAGTAATATNTTCTTATCAGAAGCGGAGTTNGAAGA 166 **** **************************** ******************** ***** consensus_6129#0 TCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAAT 1200 consensus_6129#1 TCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAAT 226 consensus_6129#2 TCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAAT 226 ************************************************************ consensus_6129#0 GTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTG 1260 consensus_6129#1 GTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTG 286 consensus_6129#2 GTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTG 286 ************************************************************ consensus_6129#0 AAAATCATTGATTATGCACTGATTCTCCGCGCCCTTTCTAGTTGGACTAATAGTTTTACC 1320 consensus_6129#1 AAAATCATTGATTATGCACTGAT-CTCCGCGCCCTTTCTAGTTGGACTAATAGTTTTACC 345 consensus_6129#2 AAAATCATTGATTATGCANTGATTCTCCGGGCCCTTTCTAGTTGGACTAATAGTTTTACC 346 ****************** **** ***** ****************************** consensus_6129#0 TGAGGGAAATGTGGTATAGAATAGTGAGTACATACATATATTTTTGCTTTACCTAACCAT 1380 consensus_6129#1 TGAGGGAAATGTGNNATAGAATAGTGAGTACGGACATATATTTT-GCTTTANTCGACGGG 404 consensus_6129#2 TGAGGGAAA------AAGGTATAGTTAGTGGGGGCACANAGTNGGGTTTNT--------- 391 ********* * * ***** *** ** * * * * ** consensus_6129#0 TTTGGTTGCTTGTACCTCAATTTTTTTGTGTATAGGACTCGGCGACTCGGCTCTTGCAAT 1440 consensus_6129#1 CTCCGC------------------------------------------------------ 410 consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 CCTGTAACTTTTGTATATCGACTCATGCTGCTACTAGTAGTATATACAGAGCATAAACAA 1500 consensus_6129#1 ------------------------------------------------------------ consensus_6129#2 ------------------------------------------------------------ consensus_6129#0 ATTTATTGTGTTCACTATTTATTTAGGTCCCTTTGATTCAAAGAAAATTCATAGGA 1556 consensus_6129#1 -------------------------------------------------------- consensus_6129#2 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||