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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1556 fasta sequence
[CTGTGTTTGTTCGTCGGCCACAGCCTCCCGTTCGTGGGCATCGTGGGAGCCCCGCGCGCCGCACACCCCTCCTCCCGCTCCTACGATCTCCAGACCTTCGCCTTCGCCTCCTCCTCCGCCGCGGCGCTTCGGCTCCCGGTCGCCGGCGATGTGGTCGCGCTGCTCCGCAGGCTCCGCCGTGGCGCTCTGCGGCGGCCGCGGCGGGCACCGCCTGCTGTCCTGCGCCGCGGCGC-----G--GCGGCGCGCGCCTGGAGCGTCCGCCTCCGCGAAGGGCATCCCGCGCTCGGCCCTGCGCGCCAGCGTCACCCCCGAATTCGTCACCGCCGCCCCCGACGAGGCCGTCGAGGAATCTTCGGTGGAGCGTGAACCGGCGGCAGAGAACAAGCTCAGAAAGCTGGCATGCCCAATCTGCTACTACCCCCTCATAAGCTCGAGCGATCAGTCCGCGCCGGTCAGTGCTGCTTCTAGTTCTAGTCTTGAGTGTTCTACCTGCAAGAAATTTTATCCCAATAGAGGGGATTACTGGGATATGACTGTAGCAGTTGGTTCTACTGAGTACTCTGAATCCACGACAGTGACAACTGAAGTTTTCAGGACTCCGCTGGTATCATTTCTTTATGAGAGGGGATGGCGCCAAAATTTCATTTGGAGTGGTTTCCCAGGCCTAGAGAGAGAGTTTGAAATGGCTCAAACTTATTTGAAACCGACAACTGGAGGGATTATAGTTGATGCAAGTTGTGGAAGTGGCCTGTTTTCAAGATTATTTGTTAAGAGTGAACTATATTCTCTTGTTGTGGCACTAGATTTCTCAGAGAACATGTTGAAGCAGTGCAATGAATATGTCAAGCAGGAAAACATTTCAGATAAGACATTAGCCTTGGCGAGAGCTGATATATCCCGACTCCCTTTTGTGAGCGGTTCAATTGATGCTGTCCATGCAGCTGCTGCGATCCATTGTTGGCCATCCCCAGCTTGTGCTGTTGCAGAAATTAGTCGAGTCCTTAGACCTGGGGGCGTTTTCGTTGCTTCCACTTTCGTTGCAGATATTCTTCCACCAGCTGTACCGGTATTGAGGATAGGACGCCCGTACATCAGCCAATTTACCGGCAGTAATATCTTCTTATCAGAAGCGGAGTTCGAAGATCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAATGTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTGAAAATCATTGATTATGCACTGATTCTCCGCGCCCTTTCTAGTTGGACTAATAGTTTTACCTGAGGGAAATGTGGTATAGAATAGTGAGTACATACATATATTTTTGCTTTACCTAACCATTTTGGTTGCTTGTACCTCAATTTTTTTGTGTATAGGACTCGGCGACTCGGCTCTTGCAATCCTGTAACTTTTGTATATCGACTCATGCTGCTACTAGTAGTATATACAGAGCATAAACAAATTTATTGTGTTCACTATTTATTTAGGTCCCTTTGATTCAAAGAAAATTCATAGGA]
[+] EMBL AK120890 [CTGTGTTTGTTCGTCGGCCACAGCCTCCCGTTCGTGGGCATCGTGGGAGCCCCGCGCGCCGCACACCCCTCCTCCCGCTCCTACGATCTCCAGACCTTCGCCTTCGCCTCCTCCTCCGCCGCGGCGCTTCGGCTCCCGGTCGCCGGCGATGTGGTCGCGCTGCTCCGCAGGCTCCGCCGTGGCGCTCTGCGGCGGCCGCGGCGGGCACCGCCTGCTGTCCTGCGCCGCGGCGC G GCGGCGCGCGCCTGGAGCGTCCGCCTCCGCGAAGGGCATCCCGCGCTCGGCCCTGCGCGCCAGCGTCACCCCCGAATTCGTCACCGCCGCCCCCGACGAGGCCGTCGAGGAATCTTCGGTGGAGCGTGAACCGGCGGCAGAGAACAAGCTCAGAAAGCTGGCATGCCCAATCTGCTACTACCCCCTCATAAGCTCGAGCGATCAGTCCGCGCCGGTCAGTGCTGCTTCTAGTTCTAGTCTTGAGTGTTCTACCTGCAAGAAATTTTATCCCAATAGAGGGGATTACTGGGATATGACTGTAGCAGTTGGTTCTACTGAGTACTCTGAATCCACGACAGTGACAACTGAAGTTTTCAGGACTCCGCTGGTATCATTTCTTTATGAGAGGGGATGGCGCCAAAATTTCATTTGGAGTGGTTTCCCAGGCCTAGAGAGAGAGTTTGAAATGGCTCAAACTTATTTGAAACCGACAACTGGAGGGATTATAGTTGATGCAAGTTGTGGAAGTGGCCTGTTTTCAAGATTATTTGTTAAGAGTGAACTATATTCTCTTGTTGTGGCACTAGATTTCTCAGAGAACATGTTGAAGCAGTGCAATGAATATGTCAAGCAGGAAAACATTTCAGATAAGACATTAGCCTTGGCGAGAGCTGATATATCCCGACTCCCTTTTGTGAGCGGTTCAATTGATGCTGTCCATGCAGCTGCTGCGATCCATTGTTGGCCATCCCCAGCTTGTGCTGTTGCAGAAATTAGTCGAGTCCTTAGACCTGGGGGCGTTTTCGTTGCTTCCACTTTCGTTGCAGATATTCTTCCACCAGCTGTACCGGTATTGAGGATAGGACGCCCGTACATCAGCCAATTTACCGGCAGTAATATCTTCTTATCAGAAGCGGAGTTCGAAGATCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAATGTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTGAAAATCATTGATTATGCACTGATTCTCCGCGCCCTTTCTAGTTGGACTAATAGTTTTACCTGAGGGAAATGTGGTATAGAATAGTGAGTACATACATATATTTTTGCTTTACCTAACCATTTTGGTTGCTTGTACCTCAATTTTTTTGTGTATAGGACTCGGCGACTCGGCTCTTGCAATCCTGTAACTTTTGTATATCGACTCATGCTGCTACTAGTAGTATATACAGAGCATAAACAAATTTATTGTGTTCACTATTTATTTAGGTCCCTTTGATTCAAAGAAAATTCATAGGA]
[+] EMBL BM422185 [ CCG CTGCTGTCCTGCGCCGCGGCGCCGGCTGCAGCGGCGCGCGCCTGGAGCGTCCGCCTCCGCGAAGGGCATCCCGCGCTCGGCCCTGCGCGCCAGCGTCACCCCCGAATTCGTCACCGCCGCCCCCGACGAGGCCGTCGAGGAATCTTCGG GGAGCGTGAACCGGCGGCAGAGAACAAGCTCAGAAAGCTGGCATGCCCAATCTGCTACTACCCCCTCATAAGCTCGAGCGATCAGTCCGCGCCGGTCAGTGCTGCTTCTAGTTCTAGTCTTGAGTGTTCTACCTGCAAGAAATTTTATCCCAATAGAGGGGATTACTGGGATATGACTGTAGCAG TGGTTCTACTGAGTACTCTGAATCCACGACAGTGACAACTGAAGTTTTCAGGACTCCGCTGGTATCATTTCTTTATGAGAGGGGATGGCGCCAAAATTTCA TTGGAGTGGTTTCCCAGGCCTAGAGAGAGAGTTTGAAATGGCTC ]
consensusID : consensus_6129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[CTGTTGCAGAAATTAGTCGAGTCCTTAGACCTGGGGGCGTTTTCGTTGCTTCCACTTTCGTTGCAGATATTCTTCCACCAGCTGNACNGGTATTGAGGATAGGACGCCCGTACATCAGCCAATTTACCGGCAGTAATATCTTCTTATCAGAAGCGGAGTTCGAAGATCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAATGTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTGAAAATCATTGATTATGCACTGATCTCCGCGCCCTTTCTAGTTGGACTAATAGTTTTACCTGAGGGAAATGTGNNATAGAATAGTGAGTACGGACATATATTTTGCTTTANTCGACGGGCTCCGC]
[-] EMBL AA754484 [CTGTTGCAGAAATTAGTCGAGTCCTTAGACCTGGGGGCGTTTTCGTTGCTTCCACTTTCGTTGCAGATATTCTTCCACCAGCTGNACNGGTATTGAGGATAGGACGCCCGTACATCAGCCAATTTACCGGCAGTAATATCTTCTTATCAGAAGCGGAGTTCGAAGATCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAATGTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTGAAAATCATTGATTATGCACTGATCTCCGCGCCCTTTCTAGTTGGACTAATAGTTTTACCTGAGGGAAATGTGNNATAGAATAGTGAGTACGGACATATATTTTGCTTTANTCGACGGGCTCCGC]
consensusID : consensus_6129#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[CTGTNGCAGAAATTAGTCGAGTCCTTAGACCNGGGGGCGTTTTCGTTGNTTCCACTTTNGTNGNAGAAANNANTCCACCAGCTGTACNGGTATNGAGGATAGGACGCCCGAACATCAGCCAATTTACCGGCAGTAATATNTTCTTATCAGAAGCGGAGTTNGAAGATCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAATGTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTGAAAATCATTGATTATGCANTGATTCTCCGGGCCCTTTCTAGTTGGACTAATAGTTTTACCTGAGGGAAAAAGGTATAGTTAGTGGGGGCACANAGTNGGGTTTNT]
[-] EMBL AA754539 [CTGTNGCAGAAATTAGTCGAGTCCTTAGACCNGGGGGCGTTTTCGTTGNTTCCACTTTNGTNGNAGAAANNANTCCACCAGCTGTACNGGTATNGAGGATAGGACGCCCGAACATCAGCCAATTTACCGGCAGTAATATNTTCTTATCAGAAGCGGAGTTNGAAGATCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAATGTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTGAAAATCATTGATTATGCANTGATTCTCCGGGCCCTTTCTAGTTGGACTAATAGTTTTACCTGAGGGAAAAAGGTATAGTTAGTGGGGGCACANAGTNGGGTTTNT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6129#0 CTGTGTTTGTTCGTCGGCCACAGCCTCCCGTTCGTGGGCATCGTGGGAGCCCCGCGCGCC 60
consensus_6129#1 ------------------------------------------------------------
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 GCACACCCCTCCTCCCGCTCCTACGATCTCCAGACCTTCGCCTTCGCCTCCTCCTCCGCC 120
consensus_6129#1 ------------------------------------------------------------
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 GCGGCGCTTCGGCTCCCGGTCGCCGGCGATGTGGTCGCGCTGCTCCGCAGGCTCCGCCGT 180
consensus_6129#1 ------------------------------------------------------------
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 GGCGCTCTGCGGCGGCCGCGGCGGGCACCGCCTGCTGTCCTGCGCCGCGGCGCGGCGGCG 240
consensus_6129#1 ------------------------------------------------------------
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 CGCGCCTGGAGCGTCCGCCTCCGCGAAGGGCATCCCGCGCTCGGCCCTGCGCGCCAGCGT 300
consensus_6129#1 ------------------------------------------------------------
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 CACCCCCGAATTCGTCACCGCCGCCCCCGACGAGGCCGTCGAGGAATCTTCGGTGGAGCG 360
consensus_6129#1 ------------------------------------------------------------
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 TGAACCGGCGGCAGAGAACAAGCTCAGAAAGCTGGCATGCCCAATCTGCTACTACCCCCT 420
consensus_6129#1 ------------------------------------------------------------
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 CATAAGCTCGAGCGATCAGTCCGCGCCGGTCAGTGCTGCTTCTAGTTCTAGTCTTGAGTG 480
consensus_6129#1 ------------------------------------------------------------
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 TTCTACCTGCAAGAAATTTTATCCCAATAGAGGGGATTACTGGGATATGACTGTAGCAGT 540
consensus_6129#1 ------------------------------------------------------------
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 TGGTTCTACTGAGTACTCTGAATCCACGACAGTGACAACTGAAGTTTTCAGGACTCCGCT 600
consensus_6129#1 ------------------------------------------------------------
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 GGTATCATTTCTTTATGAGAGGGGATGGCGCCAAAATTTCATTTGGAGTGGTTTCCCAGG 660
consensus_6129#1 ------------------------------------------------------------
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 CCTAGAGAGAGAGTTTGAAATGGCTCAAACTTATTTGAAACCGACAACTGGAGGGATTAT 720
consensus_6129#1 ------------------------------------------------------------
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 AGTTGATGCAAGTTGTGGAAGTGGCCTGTTTTCAAGATTATTTGTTAAGAGTGAACTATA 780
consensus_6129#1 ------------------------------------------------------------
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 TTCTCTTGTTGTGGCACTAGATTTCTCAGAGAACATGTTGAAGCAGTGCAATGAATATGT 840
consensus_6129#1 ------------------------------------------------------------
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 CAAGCAGGAAAACATTTCAGATAAGACATTAGCCTTGGCGAGAGCTGATATATCCCGACT 900
consensus_6129#1 ------------------------------------------------------------
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 CCCTTTTGTGAGCGGTTCAATTGATGCTGTCCATGCAGCTGCTGCGATCCATTGTTGGCC 960
consensus_6129#1 ------------------------------------------------------------
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 ATCCCCAGCTTGTGCTGTTGCAGAAATTAGTCGAGTCCTTAGACCTGGGGGCGTTTTCGT 1020
consensus_6129#1 --------------CTGTTGCAGAAATTAGTCGAGTCCTTAGACCTGGGGGCGTTTTCGT 46
consensus_6129#2 --------------CTGTNGCAGAAATTAGTCGAGTCCTTAGACCNGGGGGCGTTTTCGT 46
**** ************************** **************
consensus_6129#0 TGCTTCCACTTTCGTTGCAGATATTCTTCCACCAGCTGTACCGGTATTGAGGATAGGACG 1080
consensus_6129#1 TGCTTCCACTTTCGTTGCAGATATTCTTCCACCAGCTGNACNGGTATTGAGGATAGGACG 106
consensus_6129#2 TGNTTCCACTTTNGTNGNAGAAANNANTCCACCAGCTGTACNGGTATNGAGGATAGGACG 106
** ********* ** * *** * *********** ** ***** ************
consensus_6129#0 CCCGTACATCAGCCAATTTACCGGCAGTAATATCTTCTTATCAGAAGCGGAGTTCGAAGA 1140
consensus_6129#1 CCCGTACATCAGCCAATTTACCGGCAGTAATATCTTCTTATCAGAAGCGGAGTTCGAAGA 166
consensus_6129#2 CCCGAACATCAGCCAATTTACCGGCAGTAATATNTTCTTATCAGAAGCGGAGTTNGAAGA 166
**** **************************** ******************** *****
consensus_6129#0 TCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAAT 1200
consensus_6129#1 TCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAAT 226
consensus_6129#2 TCTTTGCAGAGCGTGTGGGCTTATTGATTTCAAGTTTGTCAGAAATGGATTCTATATAAT 226
************************************************************
consensus_6129#0 GTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTG 1260
consensus_6129#1 GTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTG 286
consensus_6129#2 GTTCTCAGCTACTAAAGCAAGCTAATTGATCAACTGGACAGTCCTCTCAACCTTGTCCTG 286
************************************************************
consensus_6129#0 AAAATCATTGATTATGCACTGATTCTCCGCGCCCTTTCTAGTTGGACTAATAGTTTTACC 1320
consensus_6129#1 AAAATCATTGATTATGCACTGAT-CTCCGCGCCCTTTCTAGTTGGACTAATAGTTTTACC 345
consensus_6129#2 AAAATCATTGATTATGCANTGATTCTCCGGGCCCTTTCTAGTTGGACTAATAGTTTTACC 346
****************** **** ***** ******************************
consensus_6129#0 TGAGGGAAATGTGGTATAGAATAGTGAGTACATACATATATTTTTGCTTTACCTAACCAT 1380
consensus_6129#1 TGAGGGAAATGTGNNATAGAATAGTGAGTACGGACATATATTTT-GCTTTANTCGACGGG 404
consensus_6129#2 TGAGGGAAA------AAGGTATAGTTAGTGGGGGCACANAGTNGGGTTTNT--------- 391
********* * * ***** *** ** * * * * **
consensus_6129#0 TTTGGTTGCTTGTACCTCAATTTTTTTGTGTATAGGACTCGGCGACTCGGCTCTTGCAAT 1440
consensus_6129#1 CTCCGC------------------------------------------------------ 410
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 CCTGTAACTTTTGTATATCGACTCATGCTGCTACTAGTAGTATATACAGAGCATAAACAA 1500
consensus_6129#1 ------------------------------------------------------------
consensus_6129#2 ------------------------------------------------------------
consensus_6129#0 ATTTATTGTGTTCACTATTTATTTAGGTCCCTTTGATTCAAAGAAAATTCATAGGA 1556
consensus_6129#1 --------------------------------------------------------
consensus_6129#2 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||