These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6131#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2101 fasta sequence [GCTTCCTCCTCGCTCTCCCTCCCTCTCTTCGCTTCCTTCCCCTCCAAAAACCCAATAAAAAACGCCTTTCCTCCCCCCCCCCCCACCTCCTCCTCCTCGATCCCCTCGCCGCGAAGATCCGATCCCGAGCACGAGCAGCACACCGATCGGTGGGTGGCCTCCTCCGGCAGCCTGAGGGGTGGCGGGAATGGCGGCGGCGGCGGCGATGGCCCTCTGACGCGACGCGCGCCTTTCTCTGGCTTTTGGCTGTGGTGGGTGCTTGTGGGTGGAGAGAGAGAGGGAGAGGGAGAGAGAGATGGGCTGCTTCTCGTGCTTCGACTCGCCCGCGGAGGAGCAGCTGAACCCCAAGGTGGGAGGGCCGTACGGCGGCGGCTCCTCCTCCTCCGCCGCCGCGGCCGCGTACGGCGGCGGCGGCGGTTCCAGCGCTGGTCGGCATGGGGAGAGGGGCGGTGGTTACCCGGACCTGCACCACCACCACCAGCAGCAGCAGCTGCCCATGGCAGCGCCGCGCGTCGAGAAGCTCTCCGCAGGGGCTGAGAAGACGAGGGTGAAGAGCAATGCAATACTAAGGGAACCTTCTGCGCCCAAGGATGCCAATGGGAATGTAATATCAGCACAGACTTTCACCTTCCGAGAACTCGCGACCGCCACCAGGAATTTCAGGCCAGAGTGCTTCCTGGGCGAAGGAGGCTTTGGGCGCGTTTATAAGGGCCGCCTCGAGAGCACTGGCCAGGTTGTGGCTATAAAGCAGCTTAATAGAGATGGGCTTCAAGGAAACAGAGAATTTCTAGTGGAAGTTCTAATGCTCAGTTTGTTACATCATCAAAATCTTGTTAATCTGATTGGCTATTGTGCTGACGGAGATCAACGTCTTCTTGTTTATGAATACATGCACTTTGGATCATTGGAAGATCATTTGCATGATCTACCTCCTGATAAGGAAGCATTGGATTGGAACACAAGGATGAAAATTGCGGCTGGTGCTGCTAAGGGACTAGAGTACCTTCATGACAAAGCAAATCCACCAGTTATTTATAGAGACTTCAAGTCATCAAACATTCTCTTAGATGAGAGTTTCCATCCAAAGCTGTCTGACTTTGGTCTTGCAAAGTTGGGTCCTGTTGGTGACAAATCTCATGTCTCTACTCGTGTGATGGGAACATATGGATATTGTGCTCCTGAGTATGCTATGACAGGACAGTTGACAGTTAAGTCTGATGTATATAGCTTTGGAGTTGTGTTGCTTGAGTTGATTACTGGTCGTCGGGCGATCGACAGCACTAGGCCACATGGGGAGCAAAATCTTGTCTCATGGGCACGACCTCTTTTCAACGACAGAAGAAAGCTCCCAAAAATGGCTGACCCAAGACTGGAGGGACGATACCCCATGCGTGGACTTTACCAAGCACTTGCAGTGGCATCTATGTGCATTCAGTCGGAGGCTGCGTCGCGTCCACTTATTGCAGATGTTGTGACTGCTCTTTCCTACCTGGCATCTCAATCATATGACCCTAATGCGGCTCATGCTTCAAGAAAGCCAGGTGGCGATCAGCGAAGCAAGGTTGGCGAGAACGGCAGGGTAGTCTCCAGGAACGACGAAGCCAGCAGCTCTGGCCACAAGTCACCAAACAAGGA-CAGGGAGGATTCCCCGAAAGAGCCCCCAGGTATCCTGAACAAGGATTTCGACAGGGAGCGGATGGTGGCGGAGGCAAAGATGTGGGGCGACAGGGAACGGATGGTGGCTGAGGCAAAGATGTGGGGTGATAGGGAGCGGATGGTAGCCGAGGCAAAGATGTGGGGCGAGAATTGGCGGGATAAGAGACGTGCGATCGAGAACGGGCAGGGGAGTCTGGATTCCCCAACTGAAAATGGCTAGGAGCAGGGCAGCGAGGGGTTGATCCATCCACCCATGTATGTCTGTTTATTTCCAACACTATTTGCTTTCCTGTGGCAGGGAGAGGGGAGGGAGGGACGGTGGGTTAGATGTACATTTCTAGAGAAAAAGAGAGAAGAAACGGGAGCTTTGAACTGGATAGTGAATTCATGTTGTTGTACTTGTAAATTCTCAGAAATTTTTGTGAGAATGAAAGGACACTTTTGA] [+] EMBL AK120921 [GCTTCCTCCTCGCTCTCCCTCCCTCTCTTCGCTTCCTTCCCCTCCAAAAACCCAATAAAAAACGCCTTTCCTCCCCCCCCCCCCACCTCCTCCTCCTCGATCCCCTCGCCGCGAAGATCCGATCCCGAGCACGAGCAGCACACCGATCGGTGGGTGGCCTCCTCCGGCAGCCTGAGGGGTGGCGGGAATGGCGGCGGCGGCGGCGATGGCCCTCTGACGCGACGCGCGCCTTTCTCTGGCTTTTGGCTGTGGTGGGTGCTTGTGGGTGGAGAGAGAGAGGGAGAGGGAGAGAGAGATGGGCTGCTTCTCGTGCTTCGACTCGCCCGCGGAGGAGCAGCTGAACCCCAAGGTGGGAGGGCCGTACGGCGGCGGCTCCTCCTCCTCCGCCGCCGCGGCCGCGTACGGCGGCGGCGGCGGTTCCAGCGCTGGTCGGCATGGGGAGAGGGGCGGTGGTTACCCGGACCTGCACCACCACCACCAGCAGCAGCAGCTGCCCATGGCAGCGCCGCGCGTCGAGAAGCTCTCCGCAGGGGCTGAGAAGACGAGGGTGAAGAGCAATGCAATACTAAGGGAACCTTCTGCGCCCAAGGATGCCAATGGGAATGTAATATCAGCACAGACTTTCACCTTCCGAGAACTCGCGACCGCCACCAGGAATTTCAGGCCAGAGTGCTTCCTGGGCGAAGGAGGCTTTGGGCGCGTTTATAAGGGCCGCCTCGAGAGCACTGGCCAGGTTGTGGCTATAAAGCAGCTTAATAGAGATGGGCTTCAAGGAAACAGAGAATTTCTAGTGGAAGTTCTAATGCTCAGTTTGTTACATCATCAAAATCTTGTTAATCTGATTGGCTATTGTGCTGACGGAGATCAACGTCTTCTTGTTTATGAATACATGCACTTTGGATCATTGGAAGATCATTTGCATGATCTACCTCCTGATAAGGAAGCATTGGATTGGAACACAAGGATGAAAATTGCGGCTGGTGCTGCTAAGGGACTAGAGTACCTTCATGACAAAGCAAATCCACCAGTTATTTATAGAGACTTCAAGTCATCAAACATTCTCTTAGATGAGAGTTTCCATCCAAAGCTGTCTGACTTTGGTCTTGCAAAGTTGGGTCCTGTTGGTGACAAATCTCATGTCTCTACTCGTGTGATGGGAACATATGGATATTGTGCTCCTGAGTATGCTATGACAGGACAGTTGACAGTTAAGTCTGATGTATATAGCTTTGGAGTTGTGTTGCTTGAGTTGATTACTGGTCGTCGGGCGATCGACAGCACTAGGCCACATGGGGAGCAAAATCTTGTCTCATGGGCACGACCTCTTTTCAACGACAGAAGAAAGCTCCCAAAAATGGCTGACCCAAGACTGGAGGGACGATACCCCATGCGTGGACTTTACCAAGCACTTGCAGTGGCATCTATGTGCATTCAGTCGGAGGCTGCGTCGCGTCCACTTATTGCAGATGTTGTGACTGCTCTTTCCTACCTGGCATCTCAATCATATGACCCTAATGCGGCTCATGCTTCAAGAAAGCCAGGTGGCGATCAGCGAAGCAAGGTTGGCGAGAACGGCAGGGTAGTCTCCAGGAACGACGAAGCCAGCAGCTCTGGCCACAAGTCACCAAACAAGGA CAGGGAGGATTCCCCGAAAGAGCCCCCAGGTATCCTGAACAAGGATTTCGACAGGGAGCGGATGGTGGCGGAGGCAAAGATGTGGGGCGACAGGGAACGGATGGTGGCTGAGGCAAAGATGTGGGGTGATAGGGAGCGGATGGTAGCCGAGGCAAAGATGTGGGGCGAGAATTGGCGGGATAAGAGACGTGCGATCGAGAACGGGCAGGGGAGTCTGGATTCCCCAACTGAAAATGGCTAGGAGCAGGGCAGCGAGGGGTTGATCCATCCACCCATGTATGTCTGTTTATTTCCAACACTATTTGCTTTCCTGTGGCAGGGAGAGGGGAGGGAGGGACGGTGGGTTAGATGTACATTTCTAGAGAAAAAGAGAGAAGAAACGGGAGCTTTGAACTGGATAGTGAATTCATGTTGTTGTACTTGTAAATTCTCAGAAATTTTTGTGAGAATGAAAGGACACTTTTGA] [+] EMBL CF309099 [ CTCCTGAGTATGCTATGACAGGACAGTTGACAGTTAAGTCTGATGTATATAGCTTTGGAGTTGTGTTGCTTGAGTTGATTACTGGTCGTCGGGCGATCGACAGCACTAGGCCACATGGGGAGCAAAATCTTGTCTCATGGGCACGACCTCTTTTCAACGACAGAAGAAAGCTCCCAAAAATGGCTGACCCAAGACTGGAGGGACGATACCCCATGCGTGGACTTTACCAAGCACTTGCAGTGGCATCTATGTGCATTCAGTCGGAGGCTGCGTCGCGTCCACTTATTGCAGATGTTGTGACTGCTCTTTCCTACCTGGCATCTCAATCATATGACCCTAATGCGGCTCATGCTTCAAGAAAGCCAGGTGGCGATCAGCGAAGCAAGGTTGGCGAGAACGGCAGGGTAGTCTCCAGGAACGACGAAGCCAGCAGCTCTGGCCACAAGTCACCAAACAAGGACCAGGGAGGATTCCCCGAAAGAGCCCCCAGGTATCCTGAACAAGGATTTCGACAGGGAGCGGATGGTGGCGGAGGCAAAGATGTGGGGCGACAGGGAACGG ] consensusID : consensus_6131#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 682 fasta sequence [TCTCCCTCCCTCTCTTCGCTTCCTTCCCCTCCAAAAACCCAATAAAAAACGCCTTTCCTACCTGGCATCTCAATCATATGACCCTAATGCGGCTCATGCTTCAAGAAAGCCAGGTGGCGATCAGCGAAGCAAGGTTGGCGAGAACGGCAGGGTAGTCTCCAGGAACGACGAAGCCAGCAGCTCTGGCCACAAGTCACCAAACAAGGACAGGGAGGATTCCCCGAAAGAGCCCCCAGGTATCCTGAACAAGGATTTCGACAGGGAGCGGATGGTGGCGGAGGCAAAGATGTGGGGCGACAGGGAACGGATGGTGGCTGAGGCAAAGATGTGGGGTGATAGGGAGCGGATGGTAGCCGAGGCAAAGATGTGGGGCGAGAATTGGCGGGATAAGAGACGTGCGATCGAGAACGGGCAGGGGAGTCTGGATTCCCCAACTGAAAATGGCTAGGAGCAGGGCAGCGAGGGGTTGATCCATCCACCCATGTATGTCTGTTTATTTCCAACACTATTTGCTTTCCTGTGGCAGGGAGAGGGGAGGGAGGGACGGTGGGTTATATGTACATTTCTAGAGAAAAAGAGAGAAGAAACGGGAGCTTTGAACTGGATAGAGAATTCATGTTGTTGTACTTGTAAATTCTCAGAAATTTTTGTGAGAATGAAAGGACACTTTTGAGTTCCACCA] [+] EMBL CB633240 [TCTCCCTCCCTCTCTTCGCTTCCTTCCCCTCCAAAAACCCAATAAAAAACGCCTTTCCTACCTGGCATCTCAATCATATGACCCTAATGCGGCTCATGCTTCAAGAAAGCCAGGTGGCGATCAGCGAAGCAAGGTTGGCGAGAACGGCAGGGTAGTCTCCAGGAACGACGAAGCCAGCAGCTCTGGCCACAAGTCACCAAACAAGGACAGGGAGGATTCCCCGAAAGAGCCCCCAGGTATCCTGAACAAGGATTTCGACAGGGAGCGGATGGTGGCGGAGGCAAAGATGTGGGGCGACAGGGAACGGATGGTGGCTGAGGCAAAGATGTGGGGTGATAGGGAGCGGATGGTAGCCGAGGCAAAGATGTGGGGCGAGAATTGGCGGGATAAGAGACGTGCGATCGAGAACGGGCAGGGGAGTCTGGATTCCCCAACTGAAAATGGCTAGGAGCAGGGCAGCGAGGGGTTGATCCATCCACCCATGTATGTCTGTTTATTTCCAACACTATTTGCTTTCCTGTGGCAGGGAGAGGGGAGGGAGGGACGGTGGGTTATATGTACATTTCTAGAGAAAAAGAGAGAAGAAACGGGAGCTTTGAACTGGATAGAGAATTCATGTTGTTGTACTTGTAAATTCTCAGAAATTTTTGTGAGAATGAAAGGACACTTTTGAGTTCCACCA] [-] EMBL CB633241 [ CCAAAAACCCAATAAAAAACGCCTTTCCTACCTGGCATCTCAATCATATGACCCTAATGCGGCTCATGCTTCAAGAAAGCCAGGTGGCGATCAGCGAAGCAAGGTTGGCGAGATCGGCAGGGTAGTTTCCAGGACCGCCGAAGCCAGCAGCTTTGGCCACAAGTCCCCAAACAAGGACAGGGAGGATTCCCCCAAAGAGCCCCCAGTTATCCTGAACAAGAATTTCGACAGGGAGCGGATCGTGCCGGAGGCAAATATCTGGGGTGACAGGGAACGGATGGTGGCTGAGCCAAAGATCTGGGGTGATAGGGAGCGGCTGGTAGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6131#0 GCTTCCTCCTCGCTCTCCCTCCCTCTCTTCGCTTCCTTCCCCTCCAAAAACCCAATAAAA 60 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 AACGCCTTTCCTCCCCCCCCCCCCACCTCCTCCTCCTCGATCCCCTCGCCGCGAAGATCC 120 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 GATCCCGAGCACGAGCAGCACACCGATCGGTGGGTGGCCTCCTCCGGCAGCCTGAGGGGT 180 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 GGCGGGAATGGCGGCGGCGGCGGCGATGGCCCTCTGACGCGACGCGCGCCTTTCTCTGGC 240 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 TTTTGGCTGTGGTGGGTGCTTGTGGGTGGAGAGAGAGAGGGAGAGGGAGAGAGAGATGGG 300 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 CTGCTTCTCGTGCTTCGACTCGCCCGCGGAGGAGCAGCTGAACCCCAAGGTGGGAGGGCC 360 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 GTACGGCGGCGGCTCCTCCTCCTCCGCCGCCGCGGCCGCGTACGGCGGCGGCGGCGGTTC 420 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 CAGCGCTGGTCGGCATGGGGAGAGGGGCGGTGGTTACCCGGACCTGCACCACCACCACCA 480 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 GCAGCAGCAGCTGCCCATGGCAGCGCCGCGCGTCGAGAAGCTCTCCGCAGGGGCTGAGAA 540 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 GACGAGGGTGAAGAGCAATGCAATACTAAGGGAACCTTCTGCGCCCAAGGATGCCAATGG 600 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 GAATGTAATATCAGCACAGACTTTCACCTTCCGAGAACTCGCGACCGCCACCAGGAATTT 660 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 CAGGCCAGAGTGCTTCCTGGGCGAAGGAGGCTTTGGGCGCGTTTATAAGGGCCGCCTCGA 720 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 GAGCACTGGCCAGGTTGTGGCTATAAAGCAGCTTAATAGAGATGGGCTTCAAGGAAACAG 780 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 AGAATTTCTAGTGGAAGTTCTAATGCTCAGTTTGTTACATCATCAAAATCTTGTTAATCT 840 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 GATTGGCTATTGTGCTGACGGAGATCAACGTCTTCTTGTTTATGAATACATGCACTTTGG 900 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 ATCATTGGAAGATCATTTGCATGATCTACCTCCTGATAAGGAAGCATTGGATTGGAACAC 960 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 AAGGATGAAAATTGCGGCTGGTGCTGCTAAGGGACTAGAGTACCTTCATGACAAAGCAAA 1020 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 TCCACCAGTTATTTATAGAGACTTCAAGTCATCAAACATTCTCTTAGATGAGAGTTTCCA 1080 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 TCCAAAGCTGTCTGACTTTGGTCTTGCAAAGTTGGGTCCTGTTGGTGACAAATCTCATGT 1140 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 CTCTACTCGTGTGATGGGAACATATGGATATTGTGCTCCTGAGTATGCTATGACAGGACA 1200 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 GTTGACAGTTAAGTCTGATGTATATAGCTTTGGAGTTGTGTTGCTTGAGTTGATTACTGG 1260 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 TCGTCGGGCGATCGACAGCACTAGGCCACATGGGGAGCAAAATCTTGTCTCATGGGCACG 1320 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 ACCTCTTTTCAACGACAGAAGAAAGCTCCCAAAAATGGCTGACCCAAGACTGGAGGGACG 1380 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 ATACCCCATGCGTGGACTTTACCAAGCACTTGCAGTGGCATCTATGTGCATTCAGTCGGA 1440 consensus_6131#1 ----------------------------------------TCTCCCTCCCTCTCTTCGC- 19 *** * * * *** consensus_6131#0 GGCTGCGTCGCGTCCACTTATTGCAGATGTTGTGACTGCTCTTTCCTACCTGGCATCTCA 1500 consensus_6131#1 --TTCCTTCCCCTCCAAAAACCCAATAAAAAACG-----CCTTTCCTACCTGGCATCTCA 72 * * ** * **** * * * * ******************** consensus_6131#0 ATCATATGACCCTAATGCGGCTCATGCTTCAAGAAAGCCAGGTGGCGATCAGCGAAGCAA 1560 consensus_6131#1 ATCATATGACCCTAATGCGGCTCATGCTTCAAGAAAGCCAGGTGGCGATCAGCGAAGCAA 132 ************************************************************ consensus_6131#0 GGTTGGCGAGAACGGCAGGGTAGTCTCCAGGAACGACGAAGCCAGCAGCTCTGGCCACAA 1620 consensus_6131#1 GGTTGGCGAGAACGGCAGGGTAGTCTCCAGGAACGACGAAGCCAGCAGCTCTGGCCACAA 192 ************************************************************ consensus_6131#0 GTCACCAAACAAGGACAGGGAGGATTCCCCGAAAGAGCCCCCAGGTATCCTGAACAAGGA 1680 consensus_6131#1 GTCACCAAACAAGGACAGGGAGGATTCCCCGAAAGAGCCCCCAGGTATCCTGAACAAGGA 252 ************************************************************ consensus_6131#0 TTTCGACAGGGAGCGGATGGTGGCGGAGGCAAAGATGTGGGGCGACAGGGAACGGATGGT 1740 consensus_6131#1 TTTCGACAGGGAGCGGATGGTGGCGGAGGCAAAGATGTGGGGCGACAGGGAACGGATGGT 312 ************************************************************ consensus_6131#0 GGCTGAGGCAAAGATGTGGGGTGATAGGGAGCGGATGGTAGCCGAGGCAAAGATGTGGGG 1800 consensus_6131#1 GGCTGAGGCAAAGATGTGGGGTGATAGGGAGCGGATGGTAGCCGAGGCAAAGATGTGGGG 372 ************************************************************ consensus_6131#0 CGAGAATTGGCGGGATAAGAGACGTGCGATCGAGAACGGGCAGGGGAGTCTGGATTCCCC 1860 consensus_6131#1 CGAGAATTGGCGGGATAAGAGACGTGCGATCGAGAACGGGCAGGGGAGTCTGGATTCCCC 432 ************************************************************ consensus_6131#0 AACTGAAAATGGCTAGGAGCAGGGCAGCGAGGGGTTGATCCATCCACCCATGTATGTCTG 1920 consensus_6131#1 AACTGAAAATGGCTAGGAGCAGGGCAGCGAGGGGTTGATCCATCCACCCATGTATGTCTG 492 ************************************************************ consensus_6131#0 TTTATTTCCAACACTATTTGCTTTCCTGTGGCAGGGAGAGGGGAGGGAGGGACGGTGGGT 1980 consensus_6131#1 TTTATTTCCAACACTATTTGCTTTCCTGTGGCAGGGAGAGGGGAGGGAGGGACGGTGGGT 552 ************************************************************ consensus_6131#0 TAGATGTACATTTCTAGAGAAAAAGAGAGAAGAAACGGGAGCTTTGAACTGGATAGTGAA 2040 consensus_6131#1 TATATGTACATTTCTAGAGAAAAAGAGAGAAGAAACGGGAGCTTTGAACTGGATAGAGAA 612 ** ***************************************************** *** consensus_6131#0 TTCATGTTGTTGTACTTGTAAATTCTCAGAAATTTTTGTGAGAATGAAAGGACACTTTTG 2100 consensus_6131#1 TTCATGTTGTTGTACTTGTAAATTCTCAGAAATTTTTGTGAGAATGAAAGGACACTTTTG 672 ************************************************************ consensus_6131#0 A--------- 2101 consensus_6131#1 AGTTCCACCA 682 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||