cluster # 6139

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Oryza sativa
cluster # 6139 cluster # 6139 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6139#0 length = 810 sequences # 3

consensus_6139#1 length = 328 sequences # 1

consensusID : consensus_6139#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 810
fasta sequence

                              [CACTCCCACTCTCACTGACTCACACCCCGTCACTCCCCTCTTCTCCTCACCTCGCCTCGCCGCGCCGCGCCGCGCGCTGAAGAGGAGGCATGAAGCGGACGAGAGCGCAGCAGCCGAAGCTCCAGGAGGGGCAGGACGGCGGCGGCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGGAGGGCGAAGCAGCCGAGGCAGCCCAAGGCGGCGTCGGCGGCAGCCAAGAAGGCGGCGGCGGCGGCGGCGGCGCGCGAGTCGTCGTCGTCGTCTGTGGGGGCGGGGGCGGCAGTGACATCCGCGGCGTCCTCCTCCTGCTCCTCCGGAGCGGACATGGCGCCCACCGTGCCCGACGTGTGTGGCGGCGGCGGCGGCGGCGCGGGATACGAGGCCGGGGCGGCGACCACCGTCGAGTGGGACCTCGACGGCGGGCTCAGCAACGGGTTGTCGTGGTGGACGTTCGGGGTGGAGGAGGAGAAGCTGCTGGGGTGGTTCCCCTTCGTGGAGGAGGACTTCCGCTGCCTCGGCGCCCGCGGCGACGCCGAGATGGCCTTCGACGACGACATTTGGAGGATCCACCAAATCTACGAGATACCCAATTACGCCGCCAAGTGATCGATCGGATTCATCTTTGGTTTTTTCCCCTAGATTACTTGGTAGTAATTGTTGCGTGGTACAGGAATCAATGTCGAGTGCGTAGCCAACAATGTGTTGACGAGGTTAGCTAGCTGGAGTAGCTGATGATGTGGTGGCATCTCAATTCCCAGATTGCAAATTGCTGCAATTCCAAATGCCCCTTCTTTGCAAAAAA]

[+] EMBL AK105373             [CACTCCCACTCTCACTGACTCACACCCCGTCACTCCCCTCTTCTCCTCACCTCGCCTCGCCGCGCCGCGCCGCGCGCTGAAGAGGAGGCATGAAGCGGACGAGAGCGCAGCAGCCGAAGCTCCAGGAGGGGCAGGACGGCGGCGGCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGGAGGGCGAAGCAGCCGAGGCAGCCCAAGGCGGCGTCGGCGGCAGCCAAGAAGGCGGCGGCGGCGGCGGCGGCGCGCGAGTCGTCGTCGTCGTCTGTGGGGGCGGGGGCGGCAGTGACATCCGCGGCGTCCTCCTCCTGCTCCTCCGGAGCGGACATGGCGCCCACCGTGCCCGACGTGTGTGGCGGCGGCGGCGGCGGCGCGGGATACGAGGCCGGGGCGGCGACCACCGTCGAGTGGGACCTCGACGGCGGGCTCAGCAACGGGTTGTCGTGGTGGACGTTCGGGGTGGAGGAGGAGAAGCTGCTGGGGTGGTTCCCCTTCGTGGAGGAGGACTTCCGCTGCCTCGGCGCCCGCGGCGACGCCGAGATGGCCTTCGACGACGACATTTGGAGGATCCACCAAATCTACGAGATACCCAATTACGCCGCCAAGTGATCGATCGGATTCATCTTTGGTTTTTTCCCCTAGATTACTTGGTAGTAATTGTTGCGTGGTACAGGAATCAATGTCGAGTGCGTAGCCAACAATGTGTTGACGAGGTTAGCTAGCTGGAGTAGCTGATGATGTGGTGGCATCTCAATTCCCAGATTGCAAATTGCTGCAATTCCAAATGCC                ]
[+] EMBL AU076136             [                                                      CCTCGCCGCGCCGCGCCGCGCGCTGAAGAGGAGGCATGAAGCGGACGAGAGCGCAGCAGCCGAAGCTCCAGGAGGGGCAGGACGGCGGCGGCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGGAGGGCGAAGCAGCCGAGGCAGCCCAAGGCGGCGTCGGCGGCAGCCAAGAAGGCGGCGGCGGCGGCGGCGGCGCGCGAGTCGTCGTCGTCGTCTGTGGGGGCGGNGGCGGCAGTGACATCCGCGGCGTCCTCCTCCTGCTCCTCCGGAGCGGACATGGCGCCCACCGTGCCCGACGTGTGTGGCGGCGGCGGCGGCGGCGCGGGATACGAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU076137             [                                                                                                                                                                                                                                                                                                                                                                                              ATACGAGGCCGGGGCGGCGACCACCGTCGAGTGGGACCTCGACGGCGGGCTCAGCAACGGGTTGTCGTGGTGGACGTTCGGGGTGGAGGAGGAGAAGCTGCTGGGGTGGTTCCCCTTCGTGGAGGAGGACTTCCGCTGCCTCGGCGCCCGCGGCGACGCCGAGATGGCCTTCGACGACGACATTTGGAGGATCCACCAAATCTACGAGATACCCAATTACGCCGCCAAGTGATCGATCGGATTCATCTTTGGTTTTTTCCCCTAGATTACTTGGTAGTAATTGTTGCGTGGTACAGGAATCAATGTCGAGTGCGTAGCCAACAATGTGTTGACGAGGTTAGCTAGCTGGAGTAGCTGATGATGTGGTGGCATCTCAATTCCCAGATTGCAAATTGCTGCAATTCCAAATGCCCCTTCTTTGCAAAAAA]




>consensus_6139#0
CACTCCCACTCTCACTGACTCACACCCCGTCACTCCCCTCTTCTCCTCACCTCGCCTCGC
CGCGCCGCGCCGCGCGCTGAAGAGGAGGCATGAAGCGGACGAGAGCGCAGCAGCCGAAGC
TCCAGGAGGGGCAGGACGGCGGCGGCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGGA
GGGCGAAGCAGCCGAGGCAGCCCAAGGCGGCGTCGGCGGCAGCCAAGAAGGCGGCGGCGG
CGGCGGCGGCGCGCGAGTCGTCGTCGTCGTCTGTGGGGGCGGGGGCGGCAGTGACATCCG
CGGCGTCCTCCTCCTGCTCCTCCGGAGCGGACATGGCGCCCACCGTGCCCGACGTGTGTG
GCGGCGGCGGCGGCGGCGCGGGATACGAGGCCGGGGCGGCGACCACCGTCGAGTGGGACC
TCGACGGCGGGCTCAGCAACGGGTTGTCGTGGTGGACGTTCGGGGTGGAGGAGGAGAAGC
TGCTGGGGTGGTTCCCCTTCGTGGAGGAGGACTTCCGCTGCCTCGGCGCCCGCGGCGACG
CCGAGATGGCCTTCGACGACGACATTTGGAGGATCCACCAAATCTACGAGATACCCAATT
ACGCCGCCAAGTGATCGATCGGATTCATCTTTGGTTTTTTCCCCTAGATTACTTGGTAGT
AATTGTTGCGTGGTACAGGAATCAATGTCGAGTGCGTAGCCAACAATGTGTTGACGAGGT
TAGCTAGCTGGAGTAGCTGATGATGTGGTGGCATCTCAATTCCCAGATTGCAAATTGCTG
CAATTCCAAATGCCCCTTCTTTGCAAAAAA

consensusID : consensus_6139#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence

                              [ACTCCCCTCTTCTCCTCACCTCGCCTCGCCGCGCCGCGCCGCGCGCTTGAAGAGGAGGCATGAAGCGGACGAGAGCGCANAGCCGAAGCTCCAGGAGGGGCAGGACGGCGNCGNCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGNAGGGCGAAGATGCCGAGGCAGCCCAAGGCGGCGTCGNCGGCAGCAAAGAAGGCGGCGNCGNCGTCGTCGGCGCGCGAGACGTCGTCGTCGTCTGTGGGGGCGTGGGCGGCANTGACATCCNNGCGTTCTTCTCCTTGTTCTTCCGTAGGGTACAATTNCGGCCAACNNTGCCCAACGGTT]

[+] EMBL OSC20842             [ACTCCCCTCTTCTCCTCACCTCGCCTCGCCGCGCCGCGCCGCGCGCTTGAAGAGGAGGCATGAAGCGGACGAGAGCGCANAGCCGAAGCTCCAGGAGGGGCAGGACGGCGNCGNCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGNAGGGCGAAGATGCCGAGGCAGCCCAAGGCGGCGTCGNCGGCAGCAAAGAAGGCGGCGNCGNCGTCGTCGGCGCGCGAGACGTCGTCGTCGTCTGTGGGGGCGTGGGCGGCANTGACATCCNNGCGTTCTTCTCCTTGTTCTTCCGTAGGGTACAATTNCGGCCAACNNTGCCCAACGGTT]




>consensus_6139#1
ACTCCCCTCTTCTCCTCACCTCGCCTCGCCGCGCCGCGCCGCGCGCTTGAAGAGGAGGCA
TGAAGCGGACGAGAGCGCANAGCCGAAGCTCCAGGAGGGGCAGGACGGCGNCGNCGCGGC
CGGGAACGCCAACCCGAAGCCGCAGCGNAGGGCGAAGATGCCGAGGCAGCCCAAGGCGGC
GTCGNCGGCAGCAAAGAAGGCGGCGNCGNCGTCGTCGGCGCGCGAGACGTCGTCGTCGTC
TGTGGGGGCGTGGGCGGCANTGACATCCNNGCGTTCTTCTCCTTGTTCTTCCGTAGGGTA
CAATTNCGGCCAACNNTGCCCAACGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6139#0      CACTCCCACTCTCACTGACTCACACCCCGTCACTCCCCTCTTCTCCTCACCTCGCCTCGC 60
consensus_6139#1      -------------------------------ACTCCCCTCTTCTCCTCACCTCGCCTCGC 29
                                                     *****************************

consensus_6139#0      CGCGCCGCGCCGCGCGCT-GAAGAGGAGGCATGAAGCGGACGAGAGCGCAGCAGCCGAAG 119
consensus_6139#1      CGCGCCGCGCCGCGCGCTTGAAGAGGAGGCATGAAGCGGACGAGAGCGCAN-AGCCGAAG 88
                      ****************** *******************************  ********

consensus_6139#0      CTCCAGGAGGGGCAGGACGGCGGCGGCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGG 179
consensus_6139#1      CTCCAGGAGGGGCAGGACGGCGNCGNCGCGGCCGGGAACGCCAACCCGAAGCCGCAGCGN 148
                      ********************** ** ********************************* 

consensus_6139#0      AGGGCGAAGCAGCCGAGGCAGCCCAAGGCGGCGTCGGCGGCAGCCAAGAAGGCGGCGGCG 239
consensus_6139#1      AGGGCGAAGATGCCGAGGCAGCCCAAGGCGGCGTCGNCGGCAGCAAAGAAGGCGGCGNCG 208
                      *********  ************************* ******* ************ **

consensus_6139#0      GCGGCGGCGGCGCGCGAGTCGTCGTCGTCGTCTGTGGGGGCGGGGGCGGCAGTGACATCC 299
consensus_6139#1      NCGTCGTCGGCGCGCGAGACGTCGTCGTCGTCTGTGGGGGCGTGGGCGGCANTGACATCC 268
                       ** ** *********** *********************** ******** ********

consensus_6139#0      GCGGCGTCCTCCTCCTGCTCCTCCGGAGCGGACA--TGGCGCCCACCGTGCCCGACGTGT 357
consensus_6139#1      NNGCGTTCTTCTCCTTGTTCTTCCGTAGGGTACAATTNCGGCCAACNNTGCCCAACGGTT 328
                        *   ** **  * ** ** **** ** * ***  *   *** **  ***** ***  *

consensus_6139#0      GTGGCGGCGGCGGCGGCGGCGCGGGATACGAGGCCGGGGCGGCGACCACCGTCGAGTGGG 417
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      ACCTCGACGGCGGGCTCAGCAACGGGTTGTCGTGGTGGACGTTCGGGGTGGAGGAGGAGA 477
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      AGCTGCTGGGGTGGTTCCCCTTCGTGGAGGAGGACTTCCGCTGCCTCGGCGCCCGCGGCG 537
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      ACGCCGAGATGGCCTTCGACGACGACATTTGGAGGATCCACCAAATCTACGAGATACCCA 597
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      ATTACGCCGCCAAGTGATCGATCGGATTCATCTTTGGTTTTTTCCCCTAGATTACTTGGT 657
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      AGTAATTGTTGCGTGGTACAGGAATCAATGTCGAGTGCGTAGCCAACAATGTGTTGACGA 717
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      GGTTAGCTAGCTGGAGTAGCTGATGATGTGGTGGCATCTCAATTCCCAGATTGCAAATTG 777
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      CTGCAATTCCAAATGCCCCTTCTTTGCAAAAAA 810
consensus_6139#1      ---------------------------------