|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6145#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 930 fasta sequence
[GTCTCCGCCTCCACCCTCACCGGCGCCACGCCGACGCCTCCGCCCTCCTCGACCACCCCCGCCCCCGACCGCGCGAGCTCCGGAGCAGTTGGCGTCGACAAGGAAGGGAGGTGAGGCGGCGGAGATGTTCTCCGGCGAGTGGACGCCGCCGTGCGGCAGCTGCTGCACCAAGAAGTACGCCAGCCTCGTCCAAATCCCATGGAGGGTCTTCTGCAAGAAGGGGTGCGACGCGGACGGCGACACCTGGGACGAGTGCATAAGTAAATGTACGGAAATATGCTACAAAGATCCTGTTTTGGAAGATCACCAGTGGAGTGCATATATCGATCGGTCTCCAGGACAGGATAGCTACTCCTTGGAGTGCTTCAATGCTTGTGTTTCTGGATGTGGATATAGGTTTGACATACCAGCGGAGAAAGTGGAGCAAATCAAACCAAACAGGCCATCCAAGCCACCACCACCACCACCTCCTGCAGTAGAGCGGGCCACGAATTCAGAACCTGCTGTGAAGGGTGAAGACGTGCCTTGCACATCAGCATAATAGTAATCTATGCAGCCCCAAATTTTGTGTAACTTTTGGTGCTTCTTTCCCTCATACTGCCTCCTTTTTTTTCTCTTTTCTGGGCTGTTTCTTTGCACCATGTGCTTGAAATTCGCAGTCCACCTTAGGCTGGGCTAGATGCTAACAAGATCTTAACGATAAATCCCAAAATCTTATTTATATTTTCATATGCTTGTTCATCCACATTGTATGTTAGTATGCTCCCTCCGTTCCTTTGTGGATGGCGCCGTTGTTAATAATACTTATAGATGGTTTATCATATCATAAACGAAAGCTTTGTGATTATATTTAGGATGCAACACACTTGGATAATATAGAATCATTTGAAGTGTAAATGTTTTTTTATTAAAAAAAAGACAAGCTCTAAA]
[+] EMBL AK121081 [GTCTCCGCCTCCACCCTCACCGGCGCCACGCCGACGCCTCCGCCCTCCTCGACCACCCCCGCCCCCGACCGCGCGAGCTCCGGAGCAGTTGGCGTCGACAAGGAAGGGAGGTGAGGCGGCGGAGATGTTCTCCGGCGAGTGGACGCCGCCGTGCGGCAGCTGCTGCACCAAGAAGTACGCCAGCCTCGTCCAAATCCCATGGAGGGTCTTCTGCAAGAAGGGGTGCGACGCGGACGGCGACACCTGGGACGAGTGCATAAGTAAATGTACGGAAATATGCTACAAAGATCCTGTTTTGGAAGATCACCAGTGGAGTGCATATATCGATCGGTCTCCAGGACAGGATAGCTACTCCTTGGAGTGCTTCAATGCTTGTGTTTCTGGATGTGGATATAGGTTTGACATACCAGCGGAGAAAGTGGAGCAAATCAAACCAAACAGGCCATCCAAGCCACCACCACCACCACCTCCTGCAGTAGAGCGGGCCACGAATTCAGAACCTGCTGTGAAGGGTGAAGACGTGCCTTGCACATCAGCATAATAGTAATCTATGCAGCCCCAAATTTTGTGTAACTTTTGGTGCTTCTTTCCCTCATACTGCCTCCTTTTTTTTCTCTTTTCTGGGCTGTTTCTTTGCACCATGTGCTTGAAATTCGCAGTCCACCTTAGGCTGGGCTAGATGCTAACAAGATCTTAACGATAAATCCCAAAATCTTAT ]
[-] EMBL CB637124 [ GGGCCACGAATTCAGAACCTGCTGTGAAGGGTGAAGACGTGCCTTGCACATCAGCATAATAGTAATCTATGCAGCCCCAAATTTTGTGTAACTTTTGGTGCTTCTTTCCCTCATACTGCCTCCTTTTTTTTCTCTTTTCTGGGCTGTTTCTTTGCACCATGTGCTTGAAATTCGCAGTCCACCTTAGGCTGGGCTAGATGCTAACAAGATCTTAACGATAAATCCCAAAATCTTATTTATATTTTCATATGCTTGTTCATCCACATTGTATGTTAGTATGCTCCCTCCGTTCCTTTGTGGATGGCGCCGTTGTTAATAATACTTATAGATGGTTTATCATATCATAAACGAAAGCTTTGTGATTATATTTAGGATGCAACACACTTGGATAATATAGAATCATTTGAAGTGTAAATGTTTTTTTATTAAAAAAAAGACAAGCTCTAAA]
consensusID : consensus_6145#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 547 fasta sequence
[GCAGGGAGGGTCTTCTGCAAGAAGGGGTGCGACGCGGACGGCGACACCTGGGACGAGTGTGAGTATTATCATCTGCCAAATGTCGCTGTGAATTGATTCATCCGCTCATTACCCGATTTTGGTTTTGCTGATGGTTTAGTTCATCGCCGATTCAAATATTTTCCATAGGATGAGATATTTATGTTATGTTATTCGTGGCTGTCCTTGTGAATGGATGGAAAATTAATATTAGGCGTATATGCTTTACACCGTTGATGGAAATCATGTTTTGGAGTTCAATAGTACTAGTATGTGGCTAGTTATCTGACAAAATAGGCATGGTTAACATAATGACCCCCTTCATTCAGTGGAATATAGTTAAAATTTTTAATTGGTAACTTGCAGTGCTGTTTGTGTCAATGCTAGCTGCAATGAGTCATGTACTCGTGTTTACAGTGGATCGTTGGTGCATTCCTTGCTCAGAAGTTTGTGTTGTTTCTGTTGGTGCCCTAGGAGCATTTTATTCTTCTGTTGATACCAATCTGTGTGATTTACGGCTAAGATTCAT]
[+] EMBL CB640437 [GCAGGGAGGGTCTTCTGCAAGAAGGGGTGCGACGCGGACGGCGACACCTGGGACGAGTGTGAGTATTATCATCTGCCAAATGTCGCTGTGAATTGATTCATCCGCTCATTACCCGATTTTGGTTTTGCTGATGGTTTAGTTCATCGCCGATTCAAATATTTTCCATAGGATGAGATATTTATGTTATGTTATTCGTGGCTGTCCTTGTGAATGGATGGAAAATTAATATTAGGCGTATATGCTTTACACCGTTGATGGAAATCATGTTTTGGAGTTCAATAGTACTAGTATGTGGCTAGTTATCTGACAAAATAGGCATGGTTAACATAATGACCCCCTTCATTCAGTGGAATATAGTTAAAATTTTTAATTGGTAACTTGCAGTGCTGTTTGTGTCAATGCTAGCTGCAATGAGTCATGTACTCGTGTTTACAGTGGATCGTTGGTGCATTCCTTGCTCAGAAGTTTGTGTTGTTTCTGTTGGTGCCCTAGGAGCATTTTATTCTTCTGTTGATACCAATCTGTGTGATTTACGGCTAAGATTCAT]
[+] EMBL CB637123 [GCAGGGAGGGTCTTCTGCAAGAA GGGTGCGACGCGGACGGCGACACCTGGGACGAGTGTGAGTATTATCATCTGCCAAATGTCGCTGTGAATTGATTCATCCGCTCATTACCCGATTTTGGTTTTGCTGATGGTTTAGTTCATCGCCGATTCAAATATTTTCCATAGGATGAGATATTTATGTTATGTTATTCGTGGCTGTCCTTGTGAATGGATGGAAAATTAATATTAGGCGTATATGCTGTACACCGTTGATGGAAATCATGTTTTGGAGTTCAATAGTACTAGTATGTGGCTAGTTATCTGACAAAATAGGCATGGTTAACATAATGACCCCCTTCATTCAGTGGAATATAGTTAAAATTTTTAATTGGTAACTTGCAGTGCTGTTTGTGTCAATGCTAGCTGCAATGAGTCATGTACTCGTGTGTACAGTGGATCGTTGGTGCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6145#0 GTCTCCGCCTCCACCCTCACCGGCGCCACGCCGACGCCTCCGCCCTCCTCGACCACCCCC 60
consensus_6145#1 ------------------------------------------------------------
consensus_6145#0 GCCCCCGACCGCGCGAGCTCCGGAGCAGTTGGCGTCGACAAGGAAGGGAGGTGAGGCGGC 120
consensus_6145#1 ------------------------------------------------------------
consensus_6145#0 GGAGATGTTCTCCGGCGAGTGGACGCCGCCGTGCGGCAGCTGCTGCACCAAGAAGTACGC 180
consensus_6145#1 ------------------------------------------------------------
consensus_6145#0 CAGCCTCGTCCAAATCCCATGGAGGGTCTTCTGCAAGAAGGGGTGCGACGCGGACGGCGA 240
consensus_6145#1 ----------------GCAGGGAGGGTCTTCTGCAAGAAGGGGTGCGACGCGGACGGCGA 44
** ****************************************
consensus_6145#0 CACCTGGGACGAGTGCATAAGTAAATGTACGGAAATATGCTACAAAGATCCTGTTTTGGA 300
consensus_6145#1 CACCTGGGACGAGTGTGAGTATTATCATCTGCCAA-ATGTCGCTGTGAAT-TGATTCATC 102
*************** * * * * ** *** * ** ** **
consensus_6145#0 AGATCACCAGTGGAGTGCA--TATATCGATCGGTC--TCCAGGACAGGAT-AGCTACTCC 355
consensus_6145#1 CGCTCATTACCCGATTTTGGTTTTGCTGATGGTTTAGTTCATCGCCGATTCAAATATTTT 162
* *** * ** * * * *** * * * ** * * * * ** *
consensus_6145#0 TTGGAGTGCTTCAATGCTTGTGTTTCTGGATGTGGATATAGGTTTGACATACCAGCGGAG 415
consensus_6145#1 CCATAG-GATGAGATATTTATGTT-----ATGTTATTCGTGGCTGTCCTTGTGAATGGAT 216
** * * ** ** **** **** * ** * * * * ***
consensus_6145#0 AAAGTGGAGCAAATCAAACCAAACAGGCCATCCAAGCCACCACCACCACCACCTCCTGCA 475
consensus_6145#1 GGA--AAATTAATATTAGGCGTATATGCTTTACAC-CGTTGATGGAAATCATGTTTTGGA 273
* * ** * * * * ** * ** * * * ** * ** *
consensus_6145#0 GTAGAGCGGGCCACGAATTCAGAACCTGCTGTGAAGGGTGAAGACGTGCCTTGCACATCA 535
consensus_6145#1 GTTCAATAG--TACTAGTATGTGGCTAGTTATCTGAC---AAAATAGGCATGG----TTA 324
** * * ** * * * * * * ** * ** * * * *
consensus_6145#0 GCATAATAGTAATCTATGCAGCCCCAAATTTTGTGTAACTTTTGGTGCTTCTTTCCCTCA 595
consensus_6145#1 ACATAATGACCCCCTTCATTCAGTGGAATATAGTTAAAATTTTTAA---TTGGTAACTTG 381
****** ** *** * ** ** **** * * **
consensus_6145#0 TACTGCCTCCTTTTTTTTCTCTTTTCTGGGCTGTTTCTTTGCACCATGTGCTTGAAATTC 655
consensus_6145#1 CAGTGC-----TGTTTGTGTCAATGCTAG----CTGCAATGAGTCATGTACTCGTG-TTT 431
* *** * *** * ** * ** * * * ** ***** ** * **
consensus_6145#0 GCAGTCCACCTTAGGCTGGGCTAGATGCTAACAAGATCTTAACGATAAATCCCAAAATCT 715
consensus_6145#1 ACAGTGGATCGTTGG-TGCATTCCTTGCTCAGAAGTTTGTGTTG-TTTCTGTTGGTGCCC 489
**** * * * ** ** * **** * *** * * * * * *
consensus_6145#0 TATTTATATTTTCATATGCTTGTTCATCCACATTGTATGTTAGTATGCTCCCTCCGTTCC 775
consensus_6145#1 TAGGAGCATTTT-ATTCTTCTGTTGATAC-CAATCTGTGT-GATTTACGGCTAAGATTCA 546
** ***** ** **** ** * ** * * *** * * * * ***
consensus_6145#0 TTTGTGGATGGCGCCGTTGTTAATAATACTTATAGATGGTTTATCATATCATAAACGAAA 835
consensus_6145#1 T----------------------------------------------------------- 547
*
consensus_6145#0 GCTTTGTGATTATATTTAGGATGCAACACACTTGGATAATATAGAATCATTTGAAGTGTA 895
consensus_6145#1 ------------------------------------------------------------
consensus_6145#0 AATGTTTTTTTATTAAAAAAAAGACAAGCTCTAAA 930
consensus_6145#1 -----------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||