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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6148 cluster # 6148       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6148#0 length = 737 sequences # 4  

consensusID : consensus_6148#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 737
fasta sequence
                              [TATGCTTATTCTCAANGTTTTTTTTTAAAAAAAACACCATGATCATAACTTTCTCATGTAAGCTGAAAGTTGATCATCTAGTTGCTTATTATGACATCATTTCAATGACATCATTTCAGATGTCGCAATTAGCTTATACAACTCTTCAGCGATGGTGGAAGTGCAATTCAGG-AAAAAAAATATTAAGCTCTGGAGAGGCATTTCCATACAGGGTTTCTCCACTAAGTAAGGCACATATCATTTTGTTTCAGTCTTCGGATTATCTTTGTTTGTGTCTTTGCTAGATACAGCAGCTGTTGCTGCAGCTGTCATTGCTGCAGCCGCTGCACCAACCTTCGCACCTCCTGCAGCTTTCATCGCCGCACCAATCTTCGCAAATGCTGCTACCCCACCAACTAGGGCAGCACGCAAAGCAACCATTGGTCTCACCTCCATGGTATTGTTCCGAACAAATCCGAGCAAGCTTAAGGTTTGTCACCAGAAGAAACAGACCAATCCACGCCCAGATTGGTAGATCTCCCCTCGCAGCACAAGTCCAGTAGAACGTAGGAGGAGAACTGAGACTACGAGAGAGGCAGTGCTTCGCCGGAAGGAGGTCACCGTGGAGGGAAGGAGGCGCGGTCGCCGGAGAGAGCACAAGCCAATCGCCGCCGCCGCCGCCGCGAGCTGGAGATGACGAGGAGCCTCGTGCCGAATTCGGCACGAGGAAATAAGTGGTGTGCATGGCTCTCTCCGTG]

[+] EMBL CB680724             [ ATGCTTATTCTCAANGTTTCTTTTTAAAAAAAACACCATGATCATAACTTTCTCATGTAAGCTGAAAGTTGATCATCTAGTTGCTTATTATGACATCATTTCAATGACATCATTTCAGATGTCGCAATTAGCTTATACAACTCTTCAGCGATGGTGGAAGTGCAATTCAGG AAAAAAAATATTAAGCTCTGGAGAGGCATTTCCATACAGGGTTTCTCCACTAAGTAAGGCACATATCATTTTGTTTCAGTCTTCGGATTATCTTTGTTTGTGTCTTTGCTAGATACAGCAGCTGTTGCTGCAGCTGTCATTGCTGCAGCCGCTGCACCAACCTTCGCACCTCCTGCAGCTTTCATCGCCGCACCAATCTTCGCAAATGCTGCTACCCCACCAACTAGGGCAGCACGCAAAGCAACCATTGGTCTCACCTCCATGGTATTGTTCCGAACAAATCCGAGCAAGCTTAAGGTTTGTCACCAGAAGAAACAGACCAATCCACGCCCAGATTGGTAGATCTCCCCTCGCAGCACAAGTCCAGTAGAACGTAGGAGGAGAACTGAGACTACGAGAGAGGCAGTGCTTCGCCGGAAGGAGGTCACCGTGGAGGGAAGGAGGCGCGGTCGCCGGAGAGAGCACAAGCCAATCGCCGCCGCCGCCGCCGCGAGCTGGAGATGACGAGGAGCCTCGTGCCGAATTCGGCACGAGGAAATAAGTGGTGTGCATGGCTCTCTCCGTG]
[-] EMBL AU174376             [tttttTTATTCTCAA GTTTTTTTTTAAAAAAAACACCATGATCATAACTTTCTCATGTAAGCTGAAAGTTGATCATCTAGTTGCTTATTATGACATCATTTCAATGACATCATTTCAGATGTCGCAATTAGCTTATACAACTCTTCAGCGATGGTGGAAGTGCAATTCAGG AAAAAAAATATTAAGCTCTGGAGAGGCATTTCCATACAGGGTTTCTCCACTAAGTAAGGCACATATCATTTTGTTTCAGTCTTCGGATTATCTTTGTTTGTGTCTTTGCTAGATACAGCAGCTGTTGCTGCAGCTGTCATTGCTGCAGCCGCTGCACCAACCTTCGCACCTCCTGCAGCTTTCATCGCCGCACCAATCTTCGCAAATGCTGCTACCCCACCAACTAGGGCAGCACGCAAAGCAACCATTGGTCTCACCT                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL AK121087             [              aaGTTTTTTTTTAAAAAAAACACCATGATCATAACTTTCTCATGTAAGCTGAAAGTTGACCATCTAGTTGCTTATTATGACATCATTTCAATGACATCATTTCAGATGTCGCAATTAGCTTATACAACTCTTCAGCGATGGTGGAAGTGCAATTCAGGAAAAAAAAATATTAAGCTCTGGAGAGGCATTTCCATACAGGGTTTCTCCACTAAGTAAGGCACATATCATTTTGTTTCAGTCTTCGGATTATCTTTGTTTGTGTCTTTGCTAGATACAGCAGCTGTTGCTGCAGCTGTCATTGCTGCAGCCGCTGCACCAACCTTCGCACCTCCTGCAGCTTTCATCGCCGCACCAATCTTCGCAAATGCTGCTACCCCACCAACTAGGGCAGCACGCAAAGCAACCATTGGTCTCACCTCCATGGTATTGTTCCGAACAAATCCGAGCAAGCTTAAGGTTTGTCACCAGAAGAAACAGACCAATCCACGCCCAGATTGGTAGATCTCCCCTCGCAGCACAAGTCCAGTAGAACGTAGGAGGAGAACTGAGACTACGAGAGAGGCAGTGCTTCGCCGGAAGGAGGTCACCGTGGAGGGAAGGAGGCGCGGTCGCCGGAGAGAGCACAAGCCAATCGCCGCCGCCGCCGCCGCGAGCTGGAGATGACGAGGAGgaatg                                                 ]
[-] EMBL AU066244             [                                                                                                                                                                                                                                                                                                                                                  GCACCTCCTGCAGCTTTCATCGCCGCACCAATCTTCGCAAATGCTGCTACCCCACCAACTAGGGCAGCACGNAAAGCAACCATTGGTCTCACCTCCATGGTATTGTTCCGAACAAATCCGAGCAAGCTTAAGGTTTGTCACCAGAAGAAACAGACCAATCCACGCCCAGATTGGTAGATCTCCCCTCGCAGCACAAGTCCAGTAGAACGTAGGAGGAGAACTGAGACTACGAGAGAGGCAGT CTTCGCCGGAAGGAGGTCACCGTGGAGGGAAGGAGGCGCGGTCGCCGGAGAGAGCACAAGCCAATCGCCGCCGCCGCCGC                                                                             ]


>consensus_6148#0 TATGCTTATTCTCAANGTTTTTTTTTAAAAAAAACACCATGATCATAACTTTCTCATGTA AGCTGAAAGTTGATCATCTAGTTGCTTATTATGACATCATTTCAATGACATCATTTCAGA TGTCGCAATTAGCTTATACAACTCTTCAGCGATGGTGGAAGTGCAATTCAGGAAAAAAAA TATTAAGCTCTGGAGAGGCATTTCCATACAGGGTTTCTCCACTAAGTAAGGCACATATCA TTTTGTTTCAGTCTTCGGATTATCTTTGTTTGTGTCTTTGCTAGATACAGCAGCTGTTGC TGCAGCTGTCATTGCTGCAGCCGCTGCACCAACCTTCGCACCTCCTGCAGCTTTCATCGC CGCACCAATCTTCGCAAATGCTGCTACCCCACCAACTAGGGCAGCACGCAAAGCAACCAT TGGTCTCACCTCCATGGTATTGTTCCGAACAAATCCGAGCAAGCTTAAGGTTTGTCACCA GAAGAAACAGACCAATCCACGCCCAGATTGGTAGATCTCCCCTCGCAGCACAAGTCCAGT AGAACGTAGGAGGAGAACTGAGACTACGAGAGAGGCAGTGCTTCGCCGGAAGGAGGTCAC CGTGGAGGGAAGGAGGCGCGGTCGCCGGAGAGAGCACAAGCCAATCGCCGCCGCCGCCGC CGCGAGCTGGAGATGACGAGGAGCCTCGTGCCGAATTCGGCACGAGGAAATAAGTGGTGT GCATGGCTCTCTCCGTG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)