These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6150#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1985 fasta sequence [GCGACACGCGCACCACCACCACCCCCCACCCACCTCCGCCGCGTTTCAAAATTCCCAAACCCCCCCTCCCCTCCCCTTCTCTCCTCCGCTGCGACGGCGGTGAGCGAGCCACCCCCGGAGTCGGCGCGGGCGGCGTGCTCCTCCTCCTCCTCCATCCATCCAAATAGTACCCCCCCCCCAATCTCCTCCCCGCTAAGCAAACCCCCCTAATCCTTCCTTAACCCCACCCTTCTTGCTTGCTTCGCTGCTGCTGCTTCGCTTGGTTGGTTGGTTATATTTAGTAGTCCGCGAGAAGAGTGGAGTTGTGACTAGGTGTGTGCTTACCACTGGGAGGAGGAGGAGGAGGAGGAGTTGTGGACTATAACGAGCGGGAATCGAGATTCCTTCGTGTTGGTGTTGTTGTTGTTGGTGGTGGTGGTGGTGCGTTGGTTGATTGGTCGGCGGCGGGAGGGATCCGGTTCTTGCGGATTCTTTACCGTTCTTGGTGAATCCGTGGAGAAGGCGGCGGGCCAAGATTGCTCGGAGGTGCTCGGCCGTGGCGGAGCGGTGGTCCGTCTATGGAACTTGCCGCCGCGGCGCCATGCCCCGCCCTGGAACTGAGGCTACCACCACCACCACTTCTGGCTGTGAAGCGGATTGTGGTGTCCCTGCTATGAAGGCGACGTTGATGATGATGAGTTGTCGGAGTCGGAGTCGGAGCGGGCGTGCTCACTGGATGCTGCTGCTCTTCTGCCTCCTCCTCGCCTTCCCTTCACATGGTCCTAGAGCCGTGGAAGCGTTTCCCGGGGGCTATGGGATAAACTACGGGAGAATAGCAAACAACATCCCTTCTCCGGATAAAGTAGTACAACTCCTGAGAGCTTCAAAGATAAGGAATGTCAAGATATACGATTCCGATCACAGCGTTCTTGATGCATTCAAGGGATCTGGGCTCAATCTGGTTATCGCCATCCCCAATGAGCTCGTGAAGGATTTTGCGGCGAATGAGAGCAGGTCGATCGACTGGCTGAATGAGAATGTGCAGCCCTATCTTCCTCAGACACGCATAGTTGGGATCACTGTGGGAAATGAGGTGCTGGGAGGTCAAGATACAAGCTTGGCCGAGCCCCTCGTTCAAGCTGTGAAGAATGTCTATAATGGACTCAAGAAATTTCACTTGCAAGACAAAATTGAGCTATTCACACCACACTCAGAAGCTGTTTTTGCTACTTCATATCCACCTTCTGCATGTGTTTTCAAGGAAGATGTCATGGTGTATATGAAACCACTGCTGGACTTCTTTCAACAAATTGGCTCACCTTTCTATGTCAACGCATATCCCTTTTTGGCCTACATAAGTGATCCAGAACATATTGACATTAATTACGCTCTCTTCAAGCCCAATCCTGGAATTGTTGACCCGAATACTAGTCTGCATTATGATAACATGTTCGATGCTCAGATAGATGCAGCTTATGCTGCTCTGCAGGCCGCTGGGTATAGAGACATGGAGGTCCGAGTAGCGGAGACTGGCTGGGCTTCTAGTGGAGATCAAACTGAGGCAGGAGCTTCAGTTGAGAATGCAAGGACTTACAATTTCAACCTCCGAAAGAGGCTCTTTCTGAGGAAAGGAACTCCTCTCAAGCCAAAGAGACCAGTCAAAGCATACATCTTTGCGTTGTTTAATGAGAATTCGAAGCCTGGACCTAGCTCGGAGAGGCACTATGGGCTGTTTAATGCTGATGGAAGGATTGCATATGATATTGGTTATGAGGGTCTATTACCTTCATCTGCACCCTCGTACTTCTTGTCTCTTAGGAAAATTCAAGCTGGGGGTTGGATTGTACACTATTCGGCTACAGTTATTTTATCTGTTTTCATTTTCTTAGCCTTAGTGACTTGATTACAGAATAGCACATCTGTATTGAACATACAACCGAGGTTAAGTGTTAGAACAATGTGATTGGGAATTTTACAATGAAAGATGAAATAATAGCTCCCTTCGC] [+] EMBL AK121115 [GCGACACGCGCACCACCACCACCCCCCACCCACCTCCGCCGCGTTTCAAAATTCCCAAACCCCCCCTCCCCTCCCCTTCTCTCCTCCGCTGCGACGGCGGTGAGCGAGCCACCCCCGGAGTCGGCGCGGGCGGCGTGCTCCTCCTCCTCCTCCATCCATCCAAATAGTACCCCCCCCCCAATCTCCTCCCCGCTAAGCAAACCCCCCTAATCCTTCCTTAACCCCACCCTTCTTGCTTGCTTCGCTGCTGCTGCTTCGCTTGGTTGGTTGGTTATATTTAGTAGTCCGCGAGAAGAGTGGAGTTGTGACTAGGTGTGTGCTTACCACTGGGAGGAGGAGGAGGAGGAGGAGTTGTGGACTATAACGAGCGGGAATCGAGATTCCTTCGTGTTGGTGTTGTTGTTGTTGGTGGTGGTGGTGGTGCGTTGGTTGATTGGTCGGCGGCGGGAGGGATCCGGTTCTTGCGGATTCTTTACCGTTCTTGGTGAATCCGTGGAGAAGGCGGCGGGCCAAGATTGCTCGGAGGTGCTCGGCCGTGGCGGAGCGGTGGTCCGTCTATGGAACTTGCCGCCGCGGCGCCATGCCCCGCCCTGGAACTGAGGCTACCACCACCACCACTTCTGGCTGTGAAGCGGATTGTGGTGTCCCTGCTATGAAGGCGACGTTGATGATGATGAGTTGTCGGAGTCGGAGTCGGAGCGGGCGTGCTCACTGGATGCTGCTGCTCTTCTGCCTCCTCCTCGCCTTCCCTTCACATGGTCCTAGAGCCGTGGAAGCGTTTCCCGGGGGCTATGGGATAAACTACGGGAGAATAGCAAACAACATCCCTTCTCCGGATAAAGTAGTACAACTCCTGAGAGCTTCAAAGATAAGGAATGTCAAGATATACGATTCCGATCACAGCGTTCTTGATGCATTCAAGGGATCTGGGCTCAATCTGGTTATCGCCATCCCCAATGAGCTCGTGAAGGATTTTGCGGCGAATGAGAGCAGGTCGATCGACTGGCTGAATGAGAATGTGCAGCCCTATCTTCCTCAGACACGCATAGTTGGGATCACTGTGGGAAATGAGGTGCTGGGAGGTCAAGATACAAGCTTGGCCGAGCCCCTCGTTCAAGCTGTGAAGAATGTCTATAATGGACTCAAGAAATTTCACTTGCAAGACAAAATTGAGCTATTCACACCACACTCAGAAGCTGTTTTTGCTACTTCATATCCACCTTCTGCATGTGTTTTCAAGGAAGATGTCATGGTGTATATGAAACCACTGCTGGACTTCTTTCAACAAATTGGCTCACCTTTCTATGTCAACGCATATCCCTTTTTGGCCTACATAAGTGATCCAGAACATATTGACATTAATTACGCTCTCTTCAAGCCCAATCCTGGAATTGTTGACCCGAATACTAGTCTGCATTATGATAACATGTTCGATGCTCAGATAGATGCAGCTTATGCTGCTCTGCAGGCCGCTGGGTATAGAGACATGGAGGTCCGAGTAGCGGAGACTGGCTGGGCTTCTAGTGGAGATCAAACTGAGGCAGGAGCTTCAGTTGAGAATGCAAGGACTTACAATTTCAACCTCCGAAAGAGGCTCTTTCTGAGGAAAGGAACTCCTCTCAAGCCAAAGAGACCAGTCAAAGCATACATCTTTGCGTTGTTTAATGAGAATTCGAAGCCTGGACCTAGCTCGGAGAGGCACTATGGGCTGTTTAATGCTGATGGAAGGATTGCATATGATATTGGTTATGAGGGTCTATTACCTTCATCTGCACCCTCGTACTTCTTGTCTCTTAGGAAAATTCAAGCTGGGGGTTGGATTGTACACTATTCGGCTACAGTTATTTTATCTGTTTTCATTTTCTTAGCCTTAGTGACTTGATTACAGAATAGCACATCTGTATTGAACATACAACCGAGGTTAAGTGTTAGAACAATGTGATTGGGAATTTTACAATGAAAGATGAAATAATAGCTCCCTTCGC] [-] EMBL CB483494 [ ATAGATGCAGCTTATGCTGCTCTGCAGGCCGCTGGGTATAGAGACATGGAGGTCCGAGTAGCGGAGACTGGCTGGGCTTCTAGTGGAGATCAAACTGAGGCAGGAACTTCAGTTGAGAATGCAAGGACTTAC ATTTCAACCTCCGAAAGAGGCTCTTTCTGAGGAAAGGAACTCCTCTCAAGCC AAGAGACCAGTC AAGCATACATCTTTGCGTTGTTTAAT ] [+] EMBL CB685639 [ GCTCTGCAGGCCGCTGGGTATACATACATGGAGGTCCTAGCCTCGGAGACTGGCTGGGCTTCTATGGGAGATCCTACTGACGCAGGAGCTTCGGTTGAGAATGCAAGGACTTACAATTTCCTCCTCCGAAAGAGGCTCTTTCTGAGGAAAGGAACTCCTCTCTAGCCAAAGAGACCAGTCAAAGCATACGTCTTTGCGTGGTTTAATGACAATTCGAAGCCTGGACCTAGCTCGGAGAGGCACTATGGGCTGTTTAATGCTGATGGAAGGATTGCATATGATATTGGTTATGAGGGTCTATTACCTTCATCTGCACCCTCGTACTTCTTGTCTCTTAGGAAAATTCAAGCTGGGGGTTGGATTGTACACTATTCGGCTACAGTTATTTTATCTGTTTTCATTTTCTTAGCCTTAGTGACTTGATTACAGAATAGCACATCTGTATTGAACATACAACCGAGGTTAAGTGTTAGAACAATGTGATTGGGAATTTTACAATGAAAGATGAAATAATAGCTC ] consensusID : consensus_6150#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [TCTACATGAGTGATCCAGAACATATTGACATTAATACGGCTCTCTTCAAGCTCAATCCGGGAATTGTTGACCCGAGATACTAGTGGGCATTATGATATCATGTATGATGCTTAGATAGATGCAGCTTATGCTGCTCAGCAGGCCGCTGGGTATAGAAACATGGAGGTCCGTGTATCGCAGACTGGCTGGGCTTCTAGTGGAGATCAAATTGAGCCAGGAGCTTCAGTTGAGAATGCAGGGACTTACAATTTCCACCTCCGAAAGAGGCTCTTTTTGAGTAAAGGATCTCCTCTCAAGCCAAAGAGACCAGTCAAAGCATATATCTCTGCGGTGTTTAATGAGAATTGGAAGCCTGGTCCTAGCTAGCAGAGGCTCTATGGGCTGTTTAATGCTGATGTAAGGATGGCATATGACATTGGTTAGGAGGGTCTCTTTCCTTGTATCAGGGCCCTGGTAATTATCGTCTTTTAGGAAAATTCTAGCTGGGGGTTGGATTGTTCGCTATTCGGGTACAGTTTTATCATCAGTTTTCCTTTTGGGAGCCATAGTGCCTTGATTCCAGAATAGCGCATTTGTATTGCACATACAACCGAGGTTAAGTGTTAGATCAATGCGATTGGGAATCTTTCAATGAACGGTGAAATAATAGCTCCTTTGGCTCCAAAAAAAAAAA] [-] EMBL CA759251 [TCTACATGAGTGATCCAGAACATATTGACATTAATACGGCTCTCTTCAAGCTCAATCCGGGAATTGTTGACCCGAGATACTAGTGGGCATTATGATATCATGTATGATGCTTAGATAGATGCAGCTTATGCTGCTCAGCAGGCCGCTGGGTATAGAAACATGGAGGTCCGTGTATCGCAGACTGGCTGGGCTTCTAGTGGAGATCAAATTGAGCCAGGAGCTTCAGTTGAGAATGCAGGGACTTACAATTTCCACCTCCGAAAGAGGCTCTTTTTGAGTAAAGGATCTCCTCTCAAGCCAAAGAGACCAGTCAAAGCATATATCTCTGCGGTGTTTAATGAGAATTGGAAGCCTGGTCCTAGCTAGCAGAGGCTCTATGGGCTGTTTAATGCTGATGTAAGGATGGCATATGACATTGGTTAGGAGGGTCTCTTTCCTTGTATCAGGGCCCTGGTAATTATCGTCTTTTAGGAAAATTCTAGCTGGGGGTTGGATTGTTCGCTATTCGGGTACAGTTTTATCATCAGTTTTCCTTTTGGGAGCCATAGTGCCTTGATTCCAGAATAGCGCATTTGTATTGCACATACAACCGAGGTTAAGTGTTAGATCAATGCGATTGGGAATCTTTCAATGAACGGTGAAATAATAGCTCCTTTGGCTCCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6150#0 GCGACACGCGCACCACCACCACCCCCCACCCACCTCCGCCGCGTTTCAAAATTCCCAAAC 60 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 CCCCCCTCCCCTCCCCTTCTCTCCTCCGCTGCGACGGCGGTGAGCGAGCCACCCCCGGAG 120 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 TCGGCGCGGGCGGCGTGCTCCTCCTCCTCCTCCATCCATCCAAATAGTACCCCCCCCCCA 180 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 ATCTCCTCCCCGCTAAGCAAACCCCCCTAATCCTTCCTTAACCCCACCCTTCTTGCTTGC 240 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 TTCGCTGCTGCTGCTTCGCTTGGTTGGTTGGTTATATTTAGTAGTCCGCGAGAAGAGTGG 300 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 AGTTGTGACTAGGTGTGTGCTTACCACTGGGAGGAGGAGGAGGAGGAGGAGTTGTGGACT 360 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 ATAACGAGCGGGAATCGAGATTCCTTCGTGTTGGTGTTGTTGTTGTTGGTGGTGGTGGTG 420 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 GTGCGTTGGTTGATTGGTCGGCGGCGGGAGGGATCCGGTTCTTGCGGATTCTTTACCGTT 480 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 CTTGGTGAATCCGTGGAGAAGGCGGCGGGCCAAGATTGCTCGGAGGTGCTCGGCCGTGGC 540 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 GGAGCGGTGGTCCGTCTATGGAACTTGCCGCCGCGGCGCCATGCCCCGCCCTGGAACTGA 600 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 GGCTACCACCACCACCACTTCTGGCTGTGAAGCGGATTGTGGTGTCCCTGCTATGAAGGC 660 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 GACGTTGATGATGATGAGTTGTCGGAGTCGGAGTCGGAGCGGGCGTGCTCACTGGATGCT 720 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 GCTGCTCTTCTGCCTCCTCCTCGCCTTCCCTTCACATGGTCCTAGAGCCGTGGAAGCGTT 780 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 TCCCGGGGGCTATGGGATAAACTACGGGAGAATAGCAAACAACATCCCTTCTCCGGATAA 840 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 AGTAGTACAACTCCTGAGAGCTTCAAAGATAAGGAATGTCAAGATATACGATTCCGATCA 900 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 CAGCGTTCTTGATGCATTCAAGGGATCTGGGCTCAATCTGGTTATCGCCATCCCCAATGA 960 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 GCTCGTGAAGGATTTTGCGGCGAATGAGAGCAGGTCGATCGACTGGCTGAATGAGAATGT 1020 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 GCAGCCCTATCTTCCTCAGACACGCATAGTTGGGATCACTGTGGGAAATGAGGTGCTGGG 1080 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 AGGTCAAGATACAAGCTTGGCCGAGCCCCTCGTTCAAGCTGTGAAGAATGTCTATAATGG 1140 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 ACTCAAGAAATTTCACTTGCAAGACAAAATTGAGCTATTCACACCACACTCAGAAGCTGT 1200 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 TTTTGCTACTTCATATCCACCTTCTGCATGTGTTTTCAAGGAAGATGTCATGGTGTATAT 1260 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 GAAACCACTGCTGGACTTCTTTCAACAAATTGGCTCACCTTTCTATGTCAACGCATATCC 1320 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 CTTTTTGGCCTACATAAGTGATCCAGAACATATTGACATTAATTACGCTCTCTTCAAGCC 1380 consensus_6150#1 --------TCTACATGAGTGATCCAGAACATATTGACATTAATACGGCTCTCTTCAAGCT 52 ****** *************************** ************* consensus_6150#0 CAATCCTGGAATTGTTGACCCGA-ATACTAGTCTGCATTATGATAACATGTTCGATGCTC 1439 consensus_6150#1 CAATCCGGGAATTGTTGACCCGAGATACTAGTGGGCATTATGATATCATGTATGATGCTT 112 ****** **************** ******** *********** ***** ****** consensus_6150#0 AGATAGATGCAGCTTATGCTGCTCTGCAGGCCGCTGGGTATAGAGACATGGAGGTCCGAG 1499 consensus_6150#1 AGATAGATGCAGCTTATGCTGCTCAGCAGGCCGCTGGGTATAGAAACATGGAGGTCCGTG 172 ************************ ******************* ************* * consensus_6150#0 TAGCGGAGACTGGCTGGGCTTCTAGTGGAGATCAAACTGAGGCAGGAGCTTCAGTTGAGA 1559 consensus_6150#1 TATCGCAGACTGGCTGGGCTTCTAGTGGAGATCAAATTGAGCCAGGAGCTTCAGTTGAGA 232 ** ** ****************************** **** ****************** consensus_6150#0 ATGCAAGGACTTACAATTTCAACCTCCGAAAGAGGCTCTTTCTGAGGAAAGGAACTCCTC 1619 consensus_6150#1 ATGCAGGGACTTACAATTTCCACCTCCGAAAGAGGCTCTTTTTGAGTAAAGGATCTCCTC 292 ***** ************** ******************** **** ****** ****** consensus_6150#0 TCAAGCCAAAGAGACCAGTCAAAGCATACATCTTTGCGTTGTTTAATGAGAATTCGAAGC 1679 consensus_6150#1 TCAAGCCAAAGAGACCAGTCAAAGCATATATCTCTGCGGTGTTTAATGAGAATTGGAAGC 352 **************************** **** **** *************** ***** consensus_6150#0 CTGGACCTAGCTCGGAGAGGCACTATGGGCTGTTTAATGCTGATGGAAGGATTGCATATG 1739 consensus_6150#1 CTGGTCCTAGCTAGCAGAGGCTCTATGGGCTGTTTAATGCTGATGTAAGGATGGCATATG 412 **** ******* * ****** *********************** ****** ******* consensus_6150#0 ATATTGGTTATGAGGGTCTATTACCTT-CATCTGCACCCTCGTACTTCTTGTCTCTTAGG 1798 consensus_6150#1 ACATTGGTTAGGAGGGTCTCTTTCCTTGTATCAGGGCCCTGGTAATTATCGTCTTTTAGG 472 * ******** ******** ** **** *** * **** *** ** * **** ***** consensus_6150#0 AAAATTCAAGCTGGGGGTTGGATTGTACACTATTCGGCTACAGTTATTTTATCTGTTTTC 1858 consensus_6150#1 AAAATTCTAGCTGGGGGTTGGATTGTTCGCTATTCGGGTACAGTTTTATCATCAGTTTTC 532 ******* ****************** * ******** ******* * * *** ****** consensus_6150#0 ATTTTCTTAGCCTTAGTGACTTGATTACAGAATAGCACATCTGTATTGAACATACAACCG 1918 consensus_6150#1 CTTTTGGGAGCCATAGTGCCTTGATTCCAGAATAGCGCATTTGTATTGCACATACAACCG 592 **** **** ***** ******* ********* *** ******* *********** consensus_6150#0 AGGTTAAGTGTTAGAACAATGTGATTGGGAATTTTACAATGAAAGATGAAATAATAGCTC 1978 consensus_6150#1 AGGTTAAGTGTTAGATCAATGCGATTGGGAATCTTTCAATGAACGGTGAAATAATAGCTC 652 *************** ***** ********** ** ******* * ************** consensus_6150#0 CCTTCGC-------------- 1985 consensus_6150#1 CTTTGGCTCCAAAAAAAAAAA 673 * ** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||