cluster # 6155

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Oryza sativa
cluster # 6155 cluster # 6155 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6155#0 length = 1181 sequences # 2

consensus_6155#1 length = 810 sequences # 2

consensusID : consensus_6155#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1181
fasta sequence

                              [CGGCACGCACCCCGCTGCACCCTGCACCACGCTCCACTCCACCCCCACCCCCACCCCACCCCACGCCGCGCCGCGCCATGCGCCGCCTCCGCCTCGCCGCCGCCGCCGCCGCGCCACACGGCGTCCTCCTCCTCCTCCTCATCCTCCTGCCGCTCGTGGCCGCGGCCGGGCCGGCGGCGGCCAAGGCGCCCGCGGCCCCGCCGGCTCCGCCCAACGTGACGACGGCGATGGCGAAGGGCGGGTGCAAGGCCTTCGCCGACCTGATCGCGGCGTCGCCCGACGCGTCCTCCACGTACCAGTCCGCCGCCGGCGGCGGCATCACCGTGTTCTGCCCCACCGACGACGCCGTCAGGGCGTTCCTGCCCAGGTACAAGAACCTCACCGCCGACGGCAAGGCCGAGTTGCTCCTGTTCCACGCCGTGCCCGTGTACTACTCCCGCGGCAGCCTCAAGTCCAACAATGGCGTCATGAACACCCTCGCCACCGACGGCGCCGCCAAGAACTACAACTTCACGGTGCAGAACGAGGGCGACGCCGTCACCATCAAGACCGCCGCCTCCGGGGACGCCGCGCGGGTCAAGTCCACGGTGGTGGACGCCGACCCCGTCGCCATCTTCACCGTCGACGCGGTGATCGAGCCGGTGGAGCTGTTCAAGCCGGCGCCGTCGCCGACGCCCGCGCCGTCGCCCGCTCCGGCGGCGGACGCTCCCAAGGCCAGTAAGCCCGCGCACCACCCGGCGCCCGTCGTGGCGGACGCTCCCGGCCCCGCCGCCACCGACTCGCCTCCGGCGGACCAGAAGAAGGAGGCCAAGAAGAGCGCGGCGGCCGGCGCGCCGCCGTGCGTCCGGTGGTTCGCCGCGGCGTTGGCCGCCGTCGCCATGGCCTCCACATTGGCCTAGGGCAATTGTTCTTTTTTTTTTGTGTTCTTGGTTGATGATCCATTGGCGTGATCGTGGTGTGATGGCGTGTTGATGTGCTTGCGAGATTTGTGCTTACTTTCGTGGAAGAACTAGTGGAGTGCTTAAATATTTTGTTAGTGCTTTCCTAGATTTTCGTTTTTTTGTTTGTGCCTGCTGTTGCTACTTGTTAATTGTTAATTAGCATTAGTAGATCATGAGATGTTGATATCTTATCAGCATTTTGGTTTTGAAAGCGGCCGCGAATTCGCGGCCGCTAGCGGC]

[+] EMBL AK109663             [CGGCACGCACCCCGCTGCACCCTGCACCACGCTCCACTCCACCCCCACCCCCACCCCACCCCACGCCGCGCCGCGCCATGCGCCGCCTCCGCCTCGCCGCCGCCGCCGCCGCGCCACACGGCGTCCTCCTCCTCCTCCTCATCCTCCTGCCGCTCGTGGCCGCGGCCGGGCCGGCGGCGGCCAAGGCGCCCGCGGCCCCGCCGGCTCCGCCCAACGTGACGACGGCGATGGCGAAGGGCGGGTGCAAGGCCTTCGCCGACCTGATCGCGGCGTCGCCCGACGCGTCCTCCACGTACCAGTCCGCCGCCGGCGGCGGCATCACCGTGTTCTGCCCCACCGACGACGCCGTCAGGGCGTTCCTGCCCAGGTACAAGAACCTCACCGCCGACGGCAAGGCCGAGTTGCTCCTGTTCCACGCCGTGCCCGTGTACTACTCCCGCGGCAGCCTCAAGTCCAACAATGGCGTCATGAACACCCTCGCCACCGACGGCGCCGCCAAGAACTACAACTTCACGGTGCAGAACGAGGGCGACGCCGTCACCATCAAGACCGCCGCCTCCGGGGACGCCGCGCGGGTCAAGTCCACGGTGGTGGACGCCGACCCCGTCGCCATCTTCACCGTCGACGCGGTGATCGAGCCGGTGGAGCTGTTCAAGCCGGCGCCGTCGCCGACGCCCGCGCCGTCGCCCGCTCCGGCGGCGGACGCTCCCAAGGCCAGTAAGCCCGCGCACCACCCGGCGCCCGTCGTGGCGGACGCTCCCGGCCCCGCCGCCACCGACTCGCCTCCGGCGGACCAGAAGAAGGAGGCCAAGAAGAGCGCGGCGGCCGGCGCGCCGCCGTGCGTCCGGTGGTTCGCCGCGGCGTTGGCCGCCGTCGCCATGGCCTCCACATTGGCCTAGGGCAATTGTTCTTTTTTTTTTGTGTTCTTGGTTGATGATCCATTGGCGTGATCGTGGTGTGATGGCGTGTTGATGTGCTTGCGAGATTTGTGCTTACTTTCGTGGAAGAACTAGTGGAGTGCTTAAATATTTTGTTA                                                                                                                                                 ]
[-] EMBL AU225444             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCCGGCGCCCGTCGTGGCGGACGCTCCCGGCCCCGCCGCCACCGACTCGCCTCCGGCGGACCAGAAGAAGGAGGCCAAGAAGAGCGCGGCGGCCGGCGCGCCGCCGTGCGTCCGGTGGTTCGCCGCGGCGTTGGCCGCCGTCGCCATGGCCTCCACATTGGCCTAGGGCAATTGTTCTTTTTTTTTTGTGATCTTGGTTGATGATCCATTGGCGTGATCGTGGTGTGATGGCGTGTTGATGTGCTTGCGAGATTTGTGCTTACTTTCGTGGAAGAACTAGTGGAGTGCTTAAATATTTTGTTAGTGCTTTCCTAGATTTTCGTTTTTTTGTTTGTGCCTGCTGTTGCTACTTGTTAATTGTTAATTAGCATTAGTAGATCATGAGATGTTGATATCTTATCAGCATTTTGGTTTTGAAAGCGGCCGCGAATTCGCGGCCGCTAGCGGC]




>consensus_6155#0
CGGCACGCACCCCGCTGCACCCTGCACCACGCTCCACTCCACCCCCACCCCCACCCCACC
CCACGCCGCGCCGCGCCATGCGCCGCCTCCGCCTCGCCGCCGCCGCCGCCGCGCCACACG
GCGTCCTCCTCCTCCTCCTCATCCTCCTGCCGCTCGTGGCCGCGGCCGGGCCGGCGGCGG
CCAAGGCGCCCGCGGCCCCGCCGGCTCCGCCCAACGTGACGACGGCGATGGCGAAGGGCG
GGTGCAAGGCCTTCGCCGACCTGATCGCGGCGTCGCCCGACGCGTCCTCCACGTACCAGT
CCGCCGCCGGCGGCGGCATCACCGTGTTCTGCCCCACCGACGACGCCGTCAGGGCGTTCC
TGCCCAGGTACAAGAACCTCACCGCCGACGGCAAGGCCGAGTTGCTCCTGTTCCACGCCG
TGCCCGTGTACTACTCCCGCGGCAGCCTCAAGTCCAACAATGGCGTCATGAACACCCTCG
CCACCGACGGCGCCGCCAAGAACTACAACTTCACGGTGCAGAACGAGGGCGACGCCGTCA
CCATCAAGACCGCCGCCTCCGGGGACGCCGCGCGGGTCAAGTCCACGGTGGTGGACGCCG
ACCCCGTCGCCATCTTCACCGTCGACGCGGTGATCGAGCCGGTGGAGCTGTTCAAGCCGG
CGCCGTCGCCGACGCCCGCGCCGTCGCCCGCTCCGGCGGCGGACGCTCCCAAGGCCAGTA
AGCCCGCGCACCACCCGGCGCCCGTCGTGGCGGACGCTCCCGGCCCCGCCGCCACCGACT
CGCCTCCGGCGGACCAGAAGAAGGAGGCCAAGAAGAGCGCGGCGGCCGGCGCGCCGCCGT
GCGTCCGGTGGTTCGCCGCGGCGTTGGCCGCCGTCGCCATGGCCTCCACATTGGCCTAGG
GCAATTGTTCTTTTTTTTTTGTGTTCTTGGTTGATGATCCATTGGCGTGATCGTGGTGTG
ATGGCGTGTTGATGTGCTTGCGAGATTTGTGCTTACTTTCGTGGAAGAACTAGTGGAGTG
CTTAAATATTTTGTTAGTGCTTTCCTAGATTTTCGTTTTTTTGTTTGTGCCTGCTGTTGC
TACTTGTTAATTGTTAATTAGCATTAGTAGATCATGAGATGTTGATATCTTATCAGCATT
TTGGTTTTGAAAGCGGCCGCGAATTCGCGGCCGCTAGCGGC

consensusID : consensus_6155#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 810
fasta sequence

                              [CGTTCATGCCCACGTACAAGAACCTCACCGCCGACGGCAAGGCGTCGCTGCTGCTCTTCCACGCCGTCCCGGTCTACTACTCGCTGCGGAGCCTCAAGTCCAACAACGGCGTCATGAACACCCTCGCCACCGACGGCTCCGCCAAGAACTTCAACTTCACGGTGCAGAACGAGGGCGACAAGGTGACCATCAAGACGGACGCCTCCGACGGCGTCGCGCGGATCAAGGACACGGTGTACGACAAGGACCCCATCGCCATCTACGCGGTGGACACGGTGCTCGAGCCGGTGGAGCTCTTCGAGCCCGCCGAGTCCCCGGCGCCGGCGCCCGCCCCGGTCGCCGACGCGCCCAAGGCCTCCAAGTCCAAGAAGGCGTCCCACCGGCACGTGGCGGACGCGCCCGGGCCGGCCGGCGACGACGCGCCGCCCGCCGACCAGAGGAAGAGCTCCAAGAAGAACGACGCCGCCGCCGGCGCCTCGTGCCTGCGGTGGCTCGCCGCCCTGCCCGTCGCCGTCGCCGTGGCCGCCGCCTTGGCTTAGCGGCGCTCACATTTCGAGGTGGATCTGCAGGAGAGGGTGGCGGCGGCGCGCGGAGTGTCGGTGGGCGGTGTCAGTGCGTGTTCTAGTGGCGTGTGCGTGTGAGACTTGTGTTTTTTTTTCTTGGATGGAAACTGCATAAAAATTTGTTTGTTTTTCTTCTTTGTTCTTTCTTACTGCTCCATTGATGTTGTTAGCATGAAAAAGAAAAATCAAATATTGATGTGGCATGGATATTCGAACAGTTTGATCAGAATTTGGGAAACTCAAAAAA]

[+] EMBL AK108305             [CGTTCATGCCCACGTACAAGAACCTCACCGCCGACGGCAAGGCGTCGCTGCTGCTCTTCCACGCCGTCCCGGTCTACTACTCGCTGCGGAGCCTCAAGTCCAACAACGGCGTCATGAACACCCTCGCCACCGACGGCTCCGCCAAGAACTTCAACTTCACGGTGCAGAACGAGGGCGACAAGGTGACCATCAAGACGGACGCCTCCGACGGCGTCGCGCGGATCAAGGACACGGTGTACGACAAGGACCCCATCGCCATCTACGCGGTGGACACGGTGCTCGAGCCGGTGGAGCTCTTCGAGCCCGCCGAGTCCCCGGCGCCGGCGCCCGCCCCGGTCGCCGACGCGCCCAAGGCCTCCAAGTCCAAGAAGGCGTCCCACCGGCACGTGGCGGACGCGCCCGGGCCGGCCGGCGACGACGCGCCGCCCGCCGACCAGAGGAAGAGCTCCAAGAAGAACGACGCCGCCGCCGGCGCCTCGTGCCTGCGGTGGCTCGCCGCCCTGCCCGTCGCCGTCGCCGTGGCCGCCGCCTTGGCTTAGCGGCGCTCACATTTCGAGGTGGATCTGCAGGAGAGGGTGGCGGCGGCGCGCGGAGTGTCGGTGGGCGGTGTCAGTGCGTGTTCTAGTGGCGTGTGCGTGTGAGACTTGTGTTTTTTTTTCTTGGATGGAAACTGCATAAAAATTTGTTTGTTTTTCTTCTTTGTTCTTTCTTACTGCTCCATTGATGTTGTTAGCATGAAAAAGAAAAATCAAATATTGATGTGGCATGG                                         ]
[+] EMBL AU166124             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGAGTGTCGGTGGGCGGTGTCAGTGCGTGTTCTAGTGGCGTGTGCGTGTGAGACTTGTGTTTTTTTTTCTTGGATGGAAACTGCATAAAAATTTGTTTGTTTNTCTTCTTTGTTCTTTCTTACTGCTCCATTGATGTTGTTAGCATGAAAAAGNAAANTCAAATATTGATGTGGCATGGATATTCGAACAGTTTGATCAGAATTTGGGAAACTCAAAAAA]




>consensus_6155#1
CGTTCATGCCCACGTACAAGAACCTCACCGCCGACGGCAAGGCGTCGCTGCTGCTCTTCC
ACGCCGTCCCGGTCTACTACTCGCTGCGGAGCCTCAAGTCCAACAACGGCGTCATGAACA
CCCTCGCCACCGACGGCTCCGCCAAGAACTTCAACTTCACGGTGCAGAACGAGGGCGACA
AGGTGACCATCAAGACGGACGCCTCCGACGGCGTCGCGCGGATCAAGGACACGGTGTACG
ACAAGGACCCCATCGCCATCTACGCGGTGGACACGGTGCTCGAGCCGGTGGAGCTCTTCG
AGCCCGCCGAGTCCCCGGCGCCGGCGCCCGCCCCGGTCGCCGACGCGCCCAAGGCCTCCA
AGTCCAAGAAGGCGTCCCACCGGCACGTGGCGGACGCGCCCGGGCCGGCCGGCGACGACG
CGCCGCCCGCCGACCAGAGGAAGAGCTCCAAGAAGAACGACGCCGCCGCCGGCGCCTCGT
GCCTGCGGTGGCTCGCCGCCCTGCCCGTCGCCGTCGCCGTGGCCGCCGCCTTGGCTTAGC
GGCGCTCACATTTCGAGGTGGATCTGCAGGAGAGGGTGGCGGCGGCGCGCGGAGTGTCGG
TGGGCGGTGTCAGTGCGTGTTCTAGTGGCGTGTGCGTGTGAGACTTGTGTTTTTTTTTCT
TGGATGGAAACTGCATAAAAATTTGTTTGTTTTTCTTCTTTGTTCTTTCTTACTGCTCCA
TTGATGTTGTTAGCATGAAAAAGAAAAATCAAATATTGATGTGGCATGGATATTCGAACA
GTTTGATCAGAATTTGGGAAACTCAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6155#0      CGGCACGCACCCCGCTGCACCCTGCACCACGCTCCACTCCACCCCCACCCCCACCCCACC 60
consensus_6155#1      ------------------------------------------------------------
                                                                                  

consensus_6155#0      CCACGCCGCGCCGCGCCATGCGCCGCCTCCGCCTCGCCGCCGCCGCCGCCGCGCCACACG 120
consensus_6155#1      ------------------------------------------------------------
                                                                                  

consensus_6155#0      GCGTCCTCCTCCTCCTCCTCATCCTCCTGCCGCTCGTGGCCGCGGCCGGGCCGGCGGCGG 180
consensus_6155#1      ------------------------------------------------------------
                                                                                  

consensus_6155#0      CCAAGGCGCCCGCGGCCCCGCCGGCTCCGCCCAACGTGACGACGGCGATGGCGAAGGGCG 240
consensus_6155#1      ------------------------------------------------------------
                                                                                  

consensus_6155#0      GGTGCAAGGCCTTCGCCGACCTGATCGCGGCGTCGCCCGACGCGTCCTCCACGTACCAGT 300
consensus_6155#1      ------------------------------------------------------------
                                                                                  

consensus_6155#0      CCGCCGCCGGCGGCGGCATCACCGTGTTCTGCCCCACCGACGACGCCGTCAGGGCGTTCC 360
consensus_6155#1      ------------------------------------------------------CGTTCA 6
                                                                            ***** 

consensus_6155#0      TGCCCAGGTACAAGAACCTCACCGCCGACGGCAAGGCCGAGTTGCTCCTGTTCCACGCCG 420
consensus_6155#1      TGCCCACGTACAAGAACCTCACCGCCGACGGCAAGGCGTCGCTGCTGCTCTTCCACGCCG 66
                      ****** ******************************   * **** ** **********

consensus_6155#0      TGCCCGTGTACTACTCCCGCGGCAGCCTCAAGTCCAACAATGGCGTCATGAACACCCTCG 480
consensus_6155#1      TCCCGGTCTACTACTCGCTGCGGAGCCTCAAGTCCAACAACGGCGTCATGAACACCCTCG 126
                      * ** ** ******** *   * ***************** *******************

consensus_6155#0      CCACCGACGGCGCCGCCAAGAACTACAACTTCACGGTGCAGAACGAGGGCGACGCCGTCA 540
consensus_6155#1      CCACCGACGGCTCCGCCAAGAACTTCAACTTCACGGTGCAGAACGAGGGCGACAAGGTGA 186
                      *********** ************ ****************************   ** *

consensus_6155#0      CCATCAAGACCGCCGCCTCCGGGGACGCCGCGCGGGTCAAGTCCACGGTGGTGGACGCCG 600
consensus_6155#1      CCATCAAGACGGACGCCTCCGACGGCGTCGCGCGGATCAAGGACACGGTGTACGACAAGG 246
                      ********** * ********  * ** ******* *****  *******   ***   *

consensus_6155#0      ACCCCGTCGCCATCTTCACCGTCGACGCGGTGATCGAGCCGGTGGAGCTGTTCAAGCCGG 660
consensus_6155#1      ACCCCATCGCCATCTACGCGGTGGACACGGTGCTCGAGCCGGTGGAGCTCTTCGAGCCCG 306
                      ***** ********* * * ** *** ***** **************** *** **** *

consensus_6155#0      CGCCGTCGCCGACGCCCGCGCCGTCGCCCGCTCCGGCGGCGGACGCTCCCAAGGCCAGTA 720
consensus_6155#1      CCGAGTCCCCG------GCGCCGGCGCCCGCCCCGGTCGCCGACGCGCCCAAGGCCTCCA 360
                      *   *** ***      ****** ******* ****  ** ***** *********   *

consensus_6155#0      AGCCCGCGCACCACCCGGCGCCCGT-CGTGGCGGACGCTCCCGGCCCCGCCGCCACCGAC 779
consensus_6155#1      AGTCCAAG-AAGGCGTCCCACCGGCACGTGGCGGACGCGCCCGGGCCGGCCGGCGACGAC 419
                      ** **  * *   *    * ** *  ************ ***** ** **** *  ****

consensus_6155#0      TCGCCTCCGGCGGACCAGAAGAAGGAGGCCAAGAAGAGCGCGGCGGCCGGCGCGCCGCCG 839
consensus_6155#1      GCGCCGCCCGCCGACCAGAGGAAGAGCTCCAAGAAGAACGACGCCGCCGCCGGCGCCTCG 479
                       **** ** ** ******* ****    ********* **  ** **** **   *  **

consensus_6155#0      TGCGTCCGGTGGTTCGCCGCGGCGTTGGCCGCCGTCGCCATGGCCTCCACATTGGCCTAG 899
consensus_6155#1      TGCCTGCGGTGGCTCGCCGCCCTGCCCGTCGCCGTCGCCGTGGCCGCCGCCTTGGCTTAG 539
                      *** * ****** *******   *   * ********** ***** ** * ***** ***

consensus_6155#0      GGCAATTGTTCTTTTTTTTTTGTGTTCTTGGTTGATGATCCATTGGCGTGATCGTGGTGT 959
consensus_6155#1      CGG---CGCTCACATTTCGAGGTGGATCTGCAGGAGAGGGTGGCGGCG-GCGCGCGGAGT 595
                       *     * **   ***    ***    **   **         **** *  ** ** **

consensus_6155#0      GATGGCGTGTTGATGTGCTTGCGAGATTTGTGCTTACTTTCGTGGAAGAACTAGTGGAGT 1019
consensus_6155#1      GTCGGTGGGC-GGTGTCAGTGCGTGTTCTAGTGGCGTGTGCGTGTGAGA-CTTGTGTTTT 653
                      *  ** * *  * ***   **** * * *         * ****  *** ** ***   *

consensus_6155#0      GCTTAAATATTTTGTTAGTGCTTTCCTAGATTTTCGTTTTTTTGTTTGTGCCTGCTGTTG 1079
consensus_6155#1      TTTTTCTTGGATGGAAACTGCATAAAAATTTGTTTGTTTTTCT-TCTTTGTTCTTTCTTA 712
                        **   *   * *  * *** *    *  * ** ****** * * * **     * ** 

consensus_6155#0      CTACTTGTTAATTGTTAATTAGCATTAGTAG--ATCATGAGATGTTGATATCTTATCAGC 1137
consensus_6155#1      CTGCTCCATTGATGTTG-TTAGCATGAAAAAGAAAAATCAAATATTGATGTGGCATGGAT 771
                      ** **   *   ****  ******* *  *   *  ** * ** ***** *   **    

consensus_6155#0      ATTTTGGTTTTGAAAGCGGCCGCGAATTCGCGGCCGCTAGCGGC 1181
consensus_6155#1      ATTCGAAC----AGTTTGATCAGAATTTGGGAAACTCAAAAAA- 810
                      ***         *    *  *   * ** *    * * *