These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 914 fasta sequence [TCTTGTTGGGGCCACAGCATCTAGTTTTTCTGTTGTCAACATCAACCTTGAGCCCGAGTGCAACCTGTTCCCTTGCATGCTTCCAAATCCTTTGAATAACTTGAATACCTACATTGAAATATTCTGCAACCTTTTTTGTGGTGTCCTTCTCTAATCTGCCACCTTTGCTTTTAGCATGTAATGCTATGTAAACAGCATATCTTTCTTTGTCTGATAACCATCTCCTTATCTTTCTCTCTTGTGGTTGAACACCTACAAGGGCATGAATGAAACAGGACAAATATATTAAATCAAATTAACAAGATTCAAAATAATATGGATAAGCAGTTGTACTAGGACTAGGAGTACTAGAATTAATATAGGTAATCAAAACATGAATTACATATCAACATGTACTTAGAGTAGCAGAATGTCAAATCA-ACATGTACCACTGTTAACATGTTACTAGGAGTGGGAGA-GTAGGAGTACTAGGATTCTGGAGTTGATGGACAATTAACATGGATAGACAGTTAACTTTTTTTT-TTTCTTTCACTCTTTATTTCAGTTCAAGAACTTCAGGCA-CA-GGGAAATAAACAAATGGCAGCA-GGAGTATGTGTACAACAGTACATGCATTCAAGTGTACAGGCA-CAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAA-CCA-TGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACAATTTGATAATGCAGTTTGTATCTTCCTT-TTGTAAATGCA-GTTTGTAACTTCTTTTTGAGACTGTAACATGTTGGGAGCAGAATTTGATAATGCAGTTTATAACATGTTGTAAATACAGTTGTTGAACTATTGGGAGCAGAATGAATGAATGAATCGATCTGACAGTGTATAAATNCGGCCAAAAAAAAAA] [+] EMBL AK121326 [TCTTGTTGGGGCCACAGCATCTAGTTTTTCTGTTGTCAACATCAACCTTGAGCCCGAGTGCAACCTGTTCCCTTGCATGCTTCCAAATCCTTTGAATAACTTGAATACCTACATTGAAATATTCTGCAACCTTTTTTGTGGTGTCCTTCTCTAATCTGCCACCTTTGCTTTTAGCATGTAATGCTATGTAAACAGCATATCTTTCTTTGTCTGATAACCATCTCCTTATCTTTCTCTCTTGTGGTTGAACACCTACAAGGGCATGAATGAAACAGGACAAATATATTAAATCAAATTAACAAGATTCAAAATAATATGGATAAGCAGTTGTACTAGGACTAGGAGTACTAGAATTAATATAGGTAATCAAAACATGAATTACATATCAACATGTACTTAGAGTAGCAGAATGTCAAATCA ACATGTACCACTGTTAACATGTTACTAGGAGTGGGAGA GTAGGAGTACTAGGATTCTGGAGTTGATGGACAATTAACATGGATAGACAGTTAACTTTTTTTT TTTCTTTCACTCTTTATTTCAGTTCAAGAACTTCAGGCA CA GGGAAATAAACAAATGGCAGCA GGAGTATGTGTACAACAGTACATGCATTCAAGTGTACAGGCA CAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAA CCA TGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACAATTTGATAATGCAGTTTGTATCTTCCTT TTGTAAATGCA GTTTGTAACTTCTTTTTGAGACTGTAACATGTTGGGAGCAGAATTTGATAATGCAGTTTATAACATGTTGTAAATACAGTTGTTGAACTATTGGGAGCAGAATGAATGAATGAATCGATCTGACAGTGTAT ] [+] EMBL AU165422 [ TACCTTCCTTGGNCTGATACCCATCTCCTTATCTTCCCCCCTTGTGNTTG ACCCCTACAAGGNCATGATTGAAACAGGACAAATATATTAAATC AATTAACAAG TTCAAAATAATATGGATAAGCAGTTGTACTAGGACTAGGAGTACTAGAATTAATATAGGTAATCAAAACATGAATTACATATCAACATGTACTTAGAGTAGCAGAATGTCAAATCA ACATGTACCACTGTTAACATGTTACTAGGAGTGGGAGA GTAGGAGTACTAGGATTCTGGAGTTGATGGACAATTAACATGGATAGACAGTTAAC TTTTTTT TTTCTTTCACTCTTTATTTCAGTTCAAGAACTTCAGGCA CA GGGAAATAAACAAATGGCAGCA GGAGTATGTGTACAACAGTACATGCATTCAAGTGTACAGGCA CAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAA CCA TGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACAATTTGATAATGCAGTTTGTATCTTCCTT TTGTAAATGCA GTTTGTAACTTCTTTTTGAGACTGTAACATGTTGGGAGCAGAATTTGATAATGCAGTTTATAACATGTTGTAAATACAGTTGTTGAACTATTGGGAGCAGAATGAATGAATGAATCGATCTGACAGTGTAAAAA ] [+] EMBL BM038274 [ AGAATGTCAAATCACACA GGACCCCTGTTAACATGTTACT GGAGTGGGAGATGTAGGAGTACTAGGATTCTGGAGTTGATGGACAATTAACATGGATAGACNGTTAACTTTTTTTTGTTTCTTTCACTCTTTATTTCAGTTCAAGAACTTCAGGCACCACGGGAAATAAACCAATGGCA CACGGAGTATGTGTACNACAGTACATGCATTCAAGTGTACAGGCACCAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAACCCACTGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACCATTTGATAATGCACTTTGTATCTTCCTTCTTGTAAATGCACGTTTGTAACTTCTTTTTGAGACTGTAACATGTTGGGAGCAGAATTTGATAATGCAGTTTATAACATGTTGTAAATACCGTTGTTGAACTATTGGGAGCAGAATGAATGAATGAATCGATCTGACNGTGTATCCCTNCGGCCAAAAAAAAAA] consensusID : consensus_6168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [AGTATGTGTACAACAGTACATGCATTCAAGTGTACAGGCACAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAACCATGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACAATTTGATAATGCAGTTTGTATCTTCCTTTTGTAAATGCAGTTTGTAACTTCTTTTTGAGACTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF318052 [AGTATGTGTACAACAGTACATGCATTCAAGTGTACAGGCACAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAACCATGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACAATTTGATAATGCAGTTTGTATCTTCCTTTTGTAAATGCAGTTTGTAACTTCTTTTTGAGACTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6168#0 TCTTGTTGGGGCCACAGCATCTAGTTTTTCTGTTGTCAACATCAACCTTGAGCCCGAGTG 60 consensus_6168#1 ------------------------------------------------------------ consensus_6168#0 CAACCTGTTCCCTTGCATGCTTCCAAATCCTTTGAATAACTTGAATACCTACATTGAAAT 120 consensus_6168#1 ------------------------------------------------------------ consensus_6168#0 ATTCTGCAACCTTTTTTGTGGTGTCCTTCTCTAATCTGCCACCTTTGCTTTTAGCATGTA 180 consensus_6168#1 ------------------------------------------------------------ consensus_6168#0 ATGCTATGTAAACAGCATATCTTTCTTTGTCTGATAACCATCTCCTTATCTTTCTCTCTT 240 consensus_6168#1 ------------------------------------------------------------ consensus_6168#0 GTGGTTGAACACCTACAAGGGCATGAATGAAACAGGACAAATATATTAAATCAAATTAAC 300 consensus_6168#1 ------------------------------------------------------------ consensus_6168#0 AAGATTCAAAATAATATGGATAAGCAGTTGTACTAGGACTAGGAGTACTAGAATTAATAT 360 consensus_6168#1 ------------------------------------------------------------ consensus_6168#0 AGGTAATCAAAACATGAATTACATATCAACATGTACTTAGAGTAGCAGAATGTCAAATCA 420 consensus_6168#1 ------------------------------------------------------------ consensus_6168#0 ACATGTACCACTGTTAACATGTTACTAGGAGTGGGAGAGTAGGAGTACTAGGATTCTGGA 480 consensus_6168#1 ------------------------------------------------------------ consensus_6168#0 GTTGATGGACAATTAACATGGATAGACAGTTAACTTTTTTTTTTTCTTTCACTCTTTATT 540 consensus_6168#1 ------------------------------------------------------------ consensus_6168#0 TCAGTTCAAGAACTTCAGGCACAGGGAAATAAACAAATGGCAGCAGGAGTATGTGTACAA 600 consensus_6168#1 -----------------------------------------------AGTATGTGTACAA 13 ************* consensus_6168#0 CAGTACATGCATTCAAGTGTACAGGCACAGCAGAAGGAAACTCTACAACATGTATAGATC 660 consensus_6168#1 CAGTACATGCATTCAAGTGTACAGGCACAGCAGAAGGAAACTCTACAACATGTATAGATC 73 ************************************************************ consensus_6168#0 AGCTTGTATACCAACATAAACCATGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCAT 720 consensus_6168#1 AGCTTGTATACCAACATAAACCATGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCAT 133 ************************************************************ consensus_6168#0 CACAATTTGATAATGCAGTTTGTATCTTCCTTTTGTAAATGCAGTTTGTAACTTCTTTTT 780 consensus_6168#1 CACAATTTGATAATGCAGTTTGTATCTTCCTTTTGTAAATGCAGTTTGTAACTTCTTTTT 193 ************************************************************ consensus_6168#0 GAGACTGTAACATGTTGGGAGCAGAATTTGATAATGCAGTTTATAACATGTTGTAAATAC 840 consensus_6168#1 GAGACTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------- 232 ********** * * * ** * ** * consensus_6168#0 AGTTGTTGAACTATTGGGAGCAGAATGAATGAATGAATCGATCTGACAGTGTATAAATNC 900 consensus_6168#1 ------------------------------------------------------------ consensus_6168#0 GGCCAAAAAAAAAA 914 consensus_6168#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||