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Oryza sativa
cluster # 6168 cluster # 6168       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6168#0 length = 914 sequences # 3  
consensus_6168#1 length = 232 sequences # 1  

consensusID : consensus_6168#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 914
fasta sequence
                              [TCTTGTTGGGGCCACAGCATCTAGTTTTTCTGTTGTCAACATCAACCTTGAGCCCGAGTGCAACCTGTTCCCTTGCATGCTTCCAAATCCTTTGAATAACTTGAATACCTACATTGAAATATTCTGCAACCTTTTTTGTGGTGTCCTTCTCTAATCTGCCACCTTTGCTTTTAGCATGTAATGCTATGTAAACAGCATATCTTTCTTTGTCTGATAACCATCTCCTTATCTTTCTCTCTTGTGGTTGAACACCTACAAGGGCATGAATGAAACAGGACAAATATATTAAATCAAATTAACAAGATTCAAAATAATATGGATAAGCAGTTGTACTAGGACTAGGAGTACTAGAATTAATATAGGTAATCAAAACATGAATTACATATCAACATGTACTTAGAGTAGCAGAATGTCAAATCA-ACATGTACCACTGTTAACATGTTACTAGGAGTGGGAGA-GTAGGAGTACTAGGATTCTGGAGTTGATGGACAATTAACATGGATAGACAGTTAACTTTTTTTT-TTTCTTTCACTCTTTATTTCAGTTCAAGAACTTCAGGCA-CA-GGGAAATAAACAAATGGCAGCA-GGAGTATGTGTACAACAGTACATGCATTCAAGTGTACAGGCA-CAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAA-CCA-TGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACAATTTGATAATGCAGTTTGTATCTTCCTT-TTGTAAATGCA-GTTTGTAACTTCTTTTTGAGACTGTAACATGTTGGGAGCAGAATTTGATAATGCAGTTTATAACATGTTGTAAATACAGTTGTTGAACTATTGGGAGCAGAATGAATGAATGAATCGATCTGACAGTGTATAAATNCGGCCAAAAAAAAAA]

[+] EMBL AK121326             [TCTTGTTGGGGCCACAGCATCTAGTTTTTCTGTTGTCAACATCAACCTTGAGCCCGAGTGCAACCTGTTCCCTTGCATGCTTCCAAATCCTTTGAATAACTTGAATACCTACATTGAAATATTCTGCAACCTTTTTTGTGGTGTCCTTCTCTAATCTGCCACCTTTGCTTTTAGCATGTAATGCTATGTAAACAGCATATCTTTCTTTGTCTGATAACCATCTCCTTATCTTTCTCTCTTGTGGTTGAACACCTACAAGGGCATGAATGAAACAGGACAAATATATTAAATCAAATTAACAAGATTCAAAATAATATGGATAAGCAGTTGTACTAGGACTAGGAGTACTAGAATTAATATAGGTAATCAAAACATGAATTACATATCAACATGTACTTAGAGTAGCAGAATGTCAAATCA ACATGTACCACTGTTAACATGTTACTAGGAGTGGGAGA GTAGGAGTACTAGGATTCTGGAGTTGATGGACAATTAACATGGATAGACAGTTAACTTTTTTTT TTTCTTTCACTCTTTATTTCAGTTCAAGAACTTCAGGCA CA GGGAAATAAACAAATGGCAGCA GGAGTATGTGTACAACAGTACATGCATTCAAGTGTACAGGCA CAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAA CCA TGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACAATTTGATAATGCAGTTTGTATCTTCCTT TTGTAAATGCA GTTTGTAACTTCTTTTTGAGACTGTAACATGTTGGGAGCAGAATTTGATAATGCAGTTTATAACATGTTGTAAATACAGTTGTTGAACTATTGGGAGCAGAATGAATGAATGAATCGATCTGACAGTGTAT                    ]
[+] EMBL AU165422             [                                                                                                                                                                                                     TACCTTCCTTGGNCTGATACCCATCTCCTTATCTTCCCCCCTTGTGNTTG ACCCCTACAAGGNCATGATTGAAACAGGACAAATATATTAAATC AATTAACAAG TTCAAAATAATATGGATAAGCAGTTGTACTAGGACTAGGAGTACTAGAATTAATATAGGTAATCAAAACATGAATTACATATCAACATGTACTTAGAGTAGCAGAATGTCAAATCA ACATGTACCACTGTTAACATGTTACTAGGAGTGGGAGA GTAGGAGTACTAGGATTCTGGAGTTGATGGACAATTAACATGGATAGACAGTTAAC TTTTTTT TTTCTTTCACTCTTTATTTCAGTTCAAGAACTTCAGGCA CA GGGAAATAAACAAATGGCAGCA GGAGTATGTGTACAACAGTACATGCATTCAAGTGTACAGGCA CAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAA CCA TGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACAATTTGATAATGCAGTTTGTATCTTCCTT TTGTAAATGCA GTTTGTAACTTCTTTTTGAGACTGTAACATGTTGGGAGCAGAATTTGATAATGCAGTTTATAACATGTTGTAAATACAGTTGTTGAACTATTGGGAGCAGAATGAATGAATGAATCGATCTGACAGTGTAAAAA                 ]
[+] EMBL BM038274             [                                                                                                                                                                                                                                                                                                                                                                                                                      AGAATGTCAAATCACACA GGACCCCTGTTAACATGTTACT GGAGTGGGAGATGTAGGAGTACTAGGATTCTGGAGTTGATGGACAATTAACATGGATAGACNGTTAACTTTTTTTTGTTTCTTTCACTCTTTATTTCAGTTCAAGAACTTCAGGCACCACGGGAAATAAACCAATGGCA CACGGAGTATGTGTACNACAGTACATGCATTCAAGTGTACAGGCACCAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAACCCACTGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACCATTTGATAATGCACTTTGTATCTTCCTTCTTGTAAATGCACGTTTGTAACTTCTTTTTGAGACTGTAACATGTTGGGAGCAGAATTTGATAATGCAGTTTATAACATGTTGTAAATACCGTTGTTGAACTATTGGGAGCAGAATGAATGAATGAATCGATCTGACNGTGTATCCCTNCGGCCAAAAAAAAAA]


>consensus_6168#0 TCTTGTTGGGGCCACAGCATCTAGTTTTTCTGTTGTCAACATCAACCTTGAGCCCGAGTG CAACCTGTTCCCTTGCATGCTTCCAAATCCTTTGAATAACTTGAATACCTACATTGAAAT ATTCTGCAACCTTTTTTGTGGTGTCCTTCTCTAATCTGCCACCTTTGCTTTTAGCATGTA ATGCTATGTAAACAGCATATCTTTCTTTGTCTGATAACCATCTCCTTATCTTTCTCTCTT GTGGTTGAACACCTACAAGGGCATGAATGAAACAGGACAAATATATTAAATCAAATTAAC AAGATTCAAAATAATATGGATAAGCAGTTGTACTAGGACTAGGAGTACTAGAATTAATAT AGGTAATCAAAACATGAATTACATATCAACATGTACTTAGAGTAGCAGAATGTCAAATCA ACATGTACCACTGTTAACATGTTACTAGGAGTGGGAGAGTAGGAGTACTAGGATTCTGGA GTTGATGGACAATTAACATGGATAGACAGTTAACTTTTTTTTTTTCTTTCACTCTTTATT TCAGTTCAAGAACTTCAGGCACAGGGAAATAAACAAATGGCAGCAGGAGTATGTGTACAA CAGTACATGCATTCAAGTGTACAGGCACAGCAGAAGGAAACTCTACAACATGTATAGATC AGCTTGTATACCAACATAAACCATGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCAT CACAATTTGATAATGCAGTTTGTATCTTCCTTTTGTAAATGCAGTTTGTAACTTCTTTTT GAGACTGTAACATGTTGGGAGCAGAATTTGATAATGCAGTTTATAACATGTTGTAAATAC AGTTGTTGAACTATTGGGAGCAGAATGAATGAATGAATCGATCTGACAGTGTATAAATNC GGCCAAAAAAAAAA



consensusID : consensus_6168#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 232
fasta sequence
                              [AGTATGTGTACAACAGTACATGCATTCAAGTGTACAGGCACAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAACCATGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACAATTTGATAATGCAGTTTGTATCTTCCTTTTGTAAATGCAGTTTGTAACTTCTTTTTGAGACTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF318052             [AGTATGTGTACAACAGTACATGCATTCAAGTGTACAGGCACAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAACCATGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACAATTTGATAATGCAGTTTGTATCTTCCTTTTGTAAATGCAGTTTGTAACTTCTTTTTGAGACTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_6168#1 AGTATGTGTACAACAGTACATGCATTCAAGTGTACAGGCACAGCAGAAGGAAACTCTACA ACATGTATAGATCAGCTTGTATACCAACATAAACCATGTGGAGGCTTGTCAATGAGTAGG AGGCTTCCATCATCACAATTTGATAATGCAGTTTGTATCTTCCTTTTGTAAATGCAGTTT GTAACTTCTTTTTGAGACTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6168#0      TCTTGTTGGGGCCACAGCATCTAGTTTTTCTGTTGTCAACATCAACCTTGAGCCCGAGTG 60
consensus_6168#1      ------------------------------------------------------------
                                                                                  

consensus_6168#0      CAACCTGTTCCCTTGCATGCTTCCAAATCCTTTGAATAACTTGAATACCTACATTGAAAT 120
consensus_6168#1      ------------------------------------------------------------
                                                                                  

consensus_6168#0      ATTCTGCAACCTTTTTTGTGGTGTCCTTCTCTAATCTGCCACCTTTGCTTTTAGCATGTA 180
consensus_6168#1      ------------------------------------------------------------
                                                                                  

consensus_6168#0      ATGCTATGTAAACAGCATATCTTTCTTTGTCTGATAACCATCTCCTTATCTTTCTCTCTT 240
consensus_6168#1      ------------------------------------------------------------
                                                                                  

consensus_6168#0      GTGGTTGAACACCTACAAGGGCATGAATGAAACAGGACAAATATATTAAATCAAATTAAC 300
consensus_6168#1      ------------------------------------------------------------
                                                                                  

consensus_6168#0      AAGATTCAAAATAATATGGATAAGCAGTTGTACTAGGACTAGGAGTACTAGAATTAATAT 360
consensus_6168#1      ------------------------------------------------------------
                                                                                  

consensus_6168#0      AGGTAATCAAAACATGAATTACATATCAACATGTACTTAGAGTAGCAGAATGTCAAATCA 420
consensus_6168#1      ------------------------------------------------------------
                                                                                  

consensus_6168#0      ACATGTACCACTGTTAACATGTTACTAGGAGTGGGAGAGTAGGAGTACTAGGATTCTGGA 480
consensus_6168#1      ------------------------------------------------------------
                                                                                  

consensus_6168#0      GTTGATGGACAATTAACATGGATAGACAGTTAACTTTTTTTTTTTCTTTCACTCTTTATT 540
consensus_6168#1      ------------------------------------------------------------
                                                                                  

consensus_6168#0      TCAGTTCAAGAACTTCAGGCACAGGGAAATAAACAAATGGCAGCAGGAGTATGTGTACAA 600
consensus_6168#1      -----------------------------------------------AGTATGTGTACAA 13
                                                                     *************

consensus_6168#0      CAGTACATGCATTCAAGTGTACAGGCACAGCAGAAGGAAACTCTACAACATGTATAGATC 660
consensus_6168#1      CAGTACATGCATTCAAGTGTACAGGCACAGCAGAAGGAAACTCTACAACATGTATAGATC 73
                      ************************************************************

consensus_6168#0      AGCTTGTATACCAACATAAACCATGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCAT 720
consensus_6168#1      AGCTTGTATACCAACATAAACCATGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCAT 133
                      ************************************************************

consensus_6168#0      CACAATTTGATAATGCAGTTTGTATCTTCCTTTTGTAAATGCAGTTTGTAACTTCTTTTT 780
consensus_6168#1      CACAATTTGATAATGCAGTTTGTATCTTCCTTTTGTAAATGCAGTTTGTAACTTCTTTTT 193
                      ************************************************************

consensus_6168#0      GAGACTGTAACATGTTGGGAGCAGAATTTGATAATGCAGTTTATAACATGTTGTAAATAC 840
consensus_6168#1      GAGACTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------- 232
                      ********** *       *  * **    * **   *                      

consensus_6168#0      AGTTGTTGAACTATTGGGAGCAGAATGAATGAATGAATCGATCTGACAGTGTATAAATNC 900
consensus_6168#1      ------------------------------------------------------------
                                                                                  

consensus_6168#0      GGCCAAAAAAAAAA 914
consensus_6168#1      --------------
                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)