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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6169#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1329 fasta sequence
[CTGAGTTGATTTAATGTTAATGTTAGTGGTGGTGGGGAGGGCAGATAATACGCATTCTGATCTGCCTGTCAAGTTGGGGGAGAAGAGATGGGTTCCTCACAGGAATCCACTTTTTCCTCCGCCTCAACGGCCGCGCAGGTGAATGCCTGCGCGCTGGACTTGCTCCCGGTATACGCCAAGGAGCTTATCGCCGGGGGTGCAGCCGGTGCATTCGCAAAGACTGCGGTAGCGCCGCTGGAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCCTTGGTATCCTCCAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTCTACAAGGGGAATGGCGCCAGTGTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTGTCGGTGCTGGATATTGAATAATTTTGCTCCATCAGTGGGTACAGGGCCTGTGGTTGATCTATTGGCTGGCTCAGCCGCAGGTGGGACTGCAGTTCTATGTACCTACCCATTAGACCTTGCTAGGACAAAGCTGGCATATCAGGTTTCAAATGTGGGCCAACCTGGCAATGCTTTGGGAAATGCTGGTAGACAGCCAGCATATGGTGGTATCAAGGACGTTTTCAAAACTGTTTACAAGGAAGGAGGCGCACGAGCTTTATACCGTGGAGTAGGCCCAACTCTGATCGGTATCCTACCATATGCTGGACTAAAATTCTATATATATGAAGACCTGAAATCGCGAGTTCCAGAGGATTACAAGAGATCTGTTGTATTGAAACTCTCTTGTGGTGCTTTAGCTGGTCTTTTTGGGCAAACCCTCACTTATCCACTGGATGTTGTCCGAAGACAGATGCAGGTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGCCAGGGGTGGAGGCAACTCTTCGCTGGCCTAAGCCTTAACTATGTGAAGGTCGTCCCTTCGGTTGCTATTGGTTTCACAACATATGACATGATGAAGAATTTGCTGAGAGTGCCACCCCGAGAGAGACTTTATCAATCGTCTGGTAACGCATGAAACGGCACTGGCCTAATTGTATCAGGACAAAGTGAATTCAATAAACTCCACCCGGTGGCGTTGTATTTTCAATCATAAATTCTATCGCTATGTTGCATAGGAGGGAGATAAGTCGTAATTAACTGTTTGATTTGTAAATAATGATAGTCATTTGAGTTACTGTAGACTTGGATAAGCTTGTGTATTGAATGTGCTACCTGTATTATACAATTTGATCAA]
[+] EMBL AK121334 [CTGAGTTGATTTAATGTTAATGTTAGTGGTGGTGGGGAGGGCAGATAATACGCATTCTGATCTGCCTGTCAAGTTGGGGGAGAAGAGATGGGTTCCTCACAGGAATCCACTTTTTCCTCCGCCTCAACGGCCGCGCAGGTGAATGCCTGCGCGCTGGACTTGCTCCCGGTATACGCCAAGGAGCTTATCGCCGGGGGTGCAGCCGGTGCATTCGCAAAGACTGCGGTAGCGCCGCTGGAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCCTTGGTATCCTCCAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTCTACAAGGGGAATGGCGCCAGTGTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTGTCGGTGCTGGATATTGAATAATTTTGCTCCATCAGTGGGTACAGGGCCTGTGGTTGATCTATTGGCTGGCTCAGCCGCAGGTGGGACTGCAGTTCTATGTACCTACCCATTAGACCTTGCTAGGACAAAGCTGGCATATCAGGTTTCAAATGTGGGCCAACCTGGCAATGCTTTGGGAAATGCTGGTAGACAGCCAGCATATGGTGGTATCAAGGACGTTTTCAAAACTGTTTACAAGGAAGGAGGCGCACGAGCTTTATACCGTGGAGTAGGCCCAACTCTGATCGGTATCCTACCATATGCTGGACTAAAATTCTATATATATGAAGACCTGAAATCGCGAGTTCCAGAGGATTACAAGAGATCTGTTGTATTGAAACTCTCTTGTGGTGCTTTAGCTGGTCTTTTTGGGCAAACCCTCACTTATCCACTGGATGTTGTCCGAAGACAGATGCAGGTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGCCAGGGGTGGAGGCAACTCTTCGCTGGCCTAAGCCTTAACTATGTGAAGGTCGTCCCTTCGGTTGCTATTGGTTTCACAACATATGACATGATGAAGAATTTGCTGAGAGTGCCACCCCGAGAGAGACTTTATCAATCGTCTGGTAACGCATGAAACGGCACTGGCCTAATTGTATCAGGACAAAGTGAATTCAATAAACTCCACCCGGTGGCGTTGTATTTTCAATCATAAATTCTATCGCTATGTTGCATAGGAGGGAGATAAGTCGTAATTAACTGTTTGATTTGTAAATAATGATAGTCATTTGAGTTACTGTAGACTTGGATAAGCTTGTGTATTGAATGTGCTACCTGTATTATACAATTTGATCAA]
consensusID : consensus_6169#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1310 fasta sequence
[CCACCCAAACCCACGGCGGCAGATTCGATCTCGAATTCTCGAACTCTCTCGATCGAACCCTGTGCCCTCTGCTCCCCGCAAAATCCTCCGCATTTGATGAGTAGTCCTATCACTCTTCTTCCTCCCCGCGCAAATCCTCGCCGCCACTTGGATGCCAGGGAGCTCCACCTCGCCGCCGACCACCACCACCACCCTTCTCTCCTCCGCTCCCCGCTGGAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCCTTGGTATCCTCCAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTCTACAAGGGGAATGGCGCCAGTGTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTATCGGTGCTGGATATTGAATAATTTTGCTCCATCAGTGGGTACAGGGCCTGTGGTTGATCTATTGGCTGGCTCAGCCGCAGGTGGGACTGCAGTTCTATGTACCTACCCATTAGACCTTGCTAGGACAAAGCTGGCATATCAGGTTTCAAATGTGGGCCAACCTGGCAATGCTTTGGGAAATGCTGGTAGACAGCCAGCATATGGTGGTATCAAGGACGTTTTCAAAACTGTTTACAAGGAAGGAGGCGCACGAGCTTTATACCGTGGAGTAGGCCCAACTCTGATCGGTATCCTACCATATGCTGGACTAAAATTCTATATATATGAAGACCTGAAATCGCGAGTTCCAGAGGATTACAAGAGATCTGTTGTATTGAAACTCTCTTGTGGTGCTTTAGCTGGTCTTTTTGGGCAAACCCTCACTTATCCACTGGATGTTGTCCGAAGACAGATGCAGGTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGCCAGGGGTGGAGGCAACTCTTCGCTGGCCTAAGCCTTAACTATGTGAAGGTCGTCCCTTCGGTTGCTATTGGTTTCACAACATATGACATGATGAAGAATTTGCTGAGAGTGCCACCCCGAGAGAGACTTTATCAATCGTCTGGTAACGCATGAAACGGCACTGGCCTAATTGTATCAGGACAAAGTGAATTCAATAAACTCCACCCGGTGGCGTTGTATTTTCAATCATAAATTCTATCGCTATGTTGCATAGGAGGGAGATAAGTCGTAATTAACTGTTTGATTTGTAAATAATGATAGTCATTTGAGTTACTGTAGACTTGGATAAGCTTGTGTATTGAATGTGCTACCTGTATTATACAATTTGATCAAAT]
[+] EMBL AK066090 [CCACCCAAACCCACGGCGGCAGATTCGATCTCGAATTCTCGAACTCTCTCGATCGAACCCTGTGCCCTCTGCTCCCCGCAAAATCCTCCGCATTTGATGAGTAGTCCTATCACTCTTCTTCCTCCCCGCGCAAATCCTCGCCGCCACTTGGATGCCAGGGAGCTCCACCTCGCCGCCGACCACCACCACCACCCTTCTCTCCTCCGCTCCCCGCTGGAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCCTTGGTATCCTCCAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTCTACAAGGGGAATGGCGCCAGTGTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTATCGGTGCTGGATATTGAATAATTTTGCTCCATCAGTGGGTACAGGGCCTGTGGTTGATCTATTGGCTGGCTCAGCCGCAGGTGGGACTGCAGTTCTATGTACCTACCCATTAGACCTTGCTAGGACAAAGCTGGCATATCAGGTTTCAAATGTGGGCCAACCTGGCAATGCTTTGGGAAATGCTGGTAGACAGCCAGCATATGGTGGTATCAAGGACGTTTTCAAAACTGTTTACAAGGAAGGAGGCGCACGAGCTTTATACCGTGGAGTAGGCCCAACTCTGATCGGTATCCTACCATATGCTGGACTAAAATTCTATATATATGAAGACCTGAAATCGCGAGTTCCAGAGGATTACAAGAGATCTGTTGTATTGAAACTCTCTTGTGGTGCTTTAGCTGGTCTTTTTGGGCAAACCCTCACTTATCCACTGGATGTTGTCCGAAGACAGATGCAGGTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGCCAGGGGTGGAGGCAACTCTTCGCTGGCCTAAGCCTTAACTATGTGAAGGTCGTCCCTTCGGTTGCTATTGGTTTCACAACATATGACATGATGAAGAATTTGCTGAGAGTGCCACCCCGAGAGAGACTTTATCAATCGTCTGGTAACGCATGAAACGGCACTGGCCTAATTGTATCAGGACAAAGTGAATTCAATAAACTCCACCCGGTGGCGTTGTATTTTCAATCATAAATTCTATCGCTATGTTGCATAGGAGGGAGATAAGTCGTAATTAACTGTTTGATTTGTAAATAATGATAGTCATTTGAGTTACTGTAGACTTGGATAAGCTTGTGTATTGAATGTGCTACCTGTATTATACAATTTGATCAAAT]
[+] EMBL CF196357 [ TTCAAAACTGTTTACAAGGA GAGGCGCACGAGCTTTATACCGTGGAGTAGGCCCAACTCTGATCGGTATCCTACCATATGCTGGACTAAAATTCTATATATATGAAGACCTGAAATCGCGAGTTCCAGAGGATTACAAGAGATCTGTTGTATTGAAACTCTCTTGTGGTGCTTTAGCTGGTCTTTTTGGGCAAACCCTCACTTATCCACTGGATGTTGTCCGAAGACAGATGCAGGTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGCCAGGGGTGGAGGCAACTCTTCGCTGGCCTAAGCCTTAACTATGTGAAGGTCGTCCCTTCGGTTGCTATTGGTTTCACAACATATGACATGATGAAGAATTTGCTGAGAGTGCCNNNNNGAGNGAGACTTTATCAATCGTCTGGTAACGCATGAAACGGCACT ]
consensusID : consensus_6169#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence
[CAGCTCTCCTCCTCCTCCTCCCCCACCCAAACCCACGGTAGCGCCGCTGGAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCNTTGGTATNTTCCAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTNTACAAGGGGAATGGCGCCAGTTTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTATCGGTGCTGGATATTGAATAATTTTGCTCCATCANTGGGTACAGGGCCTGTGGTTGATCTATTGGCTGGCTCAGCCGCAGTGGGGACTNCAAT]
[+] EMBL OSS0529A [CAGCTCTCCTCCTCCTCCTCCCCCACCCAAACCCACGGTAGCGCCGCTGGAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCNTTGGTATNTTCCAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTNTACAAGGGGAATGGCGCCAGTTTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTATCGGTGCTGGATATTGAATAATTTTGCTCCATCANTGGGTACAGGGCCTGTGGTTGATCTATTGGCTGGCTCAGCCGCAGTGGGGACTNCAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6169#1 ----------------------CCACCCAAACCCACGGCGGCAGATTCGATCTCGAATTC 38
consensus_6169#2 ------------------------------------------------------------
consensus_6169#0 CTGAGTTGATTTAATGTTAATGTTAGTGGTGGTGGGGAGGGCAGATAATACGCATTCTGA 60
consensus_6169#1 TCGAACTCTCTCGATCGAACCCTGTGCCCTCTGCTCCCCGCAAAATCCTCCGCATTTGAT 98
consensus_6169#2 ------------------------------------------------------------
consensus_6169#0 TCTGCCTGTCAAG-TTGGGGGAGAAGAGATGGGTTCCTCACAGGAATCCACTTTTTCCTC 119
consensus_6169#1 GAGTAGTCCTATCACTCTTCTTCCTCCCCGCGCAAATCCTCGCCGCCACTTGGATGCCAG 158
consensus_6169#2 ------------------------------------------------------------
consensus_6169#0 CGCCTCAACGGCCGCGCAGGTGAATGCCTGCGCGCTGGACTTGCTCCCGGTATACGCCAA 179
consensus_6169#1 GGAGCTC--CACCTCGCCGCCGACCACCACCACCACCCTTCTCTCCTCCGCTCCCCGCTG 216
consensus_6169#2 ---------CAGCTCTCCTCCT-CCTCCTCCCCCACCCAAACCCACGGTAG-CGCCGCTG 49
consensus_6169#0 GGAGCTTATCGCCGGGGGTGCAGCCGGTGCATTCGCA-AAGACTGCGGTAG-CGCCGCTG 237
* * * ** * * * * * * ******
consensus_6169#1 GAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCCTTGGTATCCTC 276
consensus_6169#2 GAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCNTTGGTATNTTC 109
consensus_6169#0 GAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCCTTGGTATCCTC 297
************************************************ ******* **
consensus_6169#1 CAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTCTACAAGGGGAATGGC 336
consensus_6169#2 CAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTNTACAAGGGGAATGGC 169
consensus_6169#0 CAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTCTACAAGGGGAATGGC 357
******************************************** ***************
consensus_6169#1 GCCAGTGTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTAT 396
consensus_6169#2 GCCAGTTTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTAT 229
consensus_6169#0 GCCAGTGTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTGT 417
****** *************************************************** *
consensus_6169#1 CGGTGCTGGATATTGAATAATTTTGCTCCATCAGTGGGTACAGGGCCTGTGGTTGATCTA 456
consensus_6169#2 CGGTGCTGGATATTGAATAATTTTGCTCCATCANTGGGTACAGGGCCTGTGGTTGATCTA 289
consensus_6169#0 CGGTGCTGGATATTGAATAATTTTGCTCCATCAGTGGGTACAGGGCCTGTGGTTGATCTA 477
********************************* **************************
consensus_6169#1 TTGGCTGGCTCAGCCGCAGGTGGGACTGCAGTTCTATGTACCTACCCATTAGACCTTGCT 516
consensus_6169#2 TTGGCTGGCTCAGCCGCAGTGGGGACTNCAAT---------------------------- 321
consensus_6169#0 TTGGCTGGCTCAGCCGCAGGTGGGACTGCAGTTCTATGTACCTACCCATTAGACCTTGCT 537
******************* ****** ** *
consensus_6169#1 AGGACAAAGCTGGCATATCAGGTTTCAAATGTGGGCCAACCTGGCAATGCTTTGGGAAAT 576
consensus_6169#2 ------------------------------------------------------------
consensus_6169#0 AGGACAAAGCTGGCATATCAGGTTTCAAATGTGGGCCAACCTGGCAATGCTTTGGGAAAT 597
consensus_6169#1 GCTGGTAGACAGCCAGCATATGGTGGTATCAAGGACGTTTTCAAAACTGTTTACAAGGAA 636
consensus_6169#2 ------------------------------------------------------------
consensus_6169#0 GCTGGTAGACAGCCAGCATATGGTGGTATCAAGGACGTTTTCAAAACTGTTTACAAGGAA 657
consensus_6169#1 GGAGGCGCACGAGCTTTATACCGTGGAGTAGGCCCAACTCTGATCGGTATCCTACCATAT 696
consensus_6169#2 ------------------------------------------------------------
consensus_6169#0 GGAGGCGCACGAGCTTTATACCGTGGAGTAGGCCCAACTCTGATCGGTATCCTACCATAT 717
consensus_6169#1 GCTGGACTAAAATTCTATATATATGAAGACCTGAAATCGCGAGTTCCAGAGGATTACAAG 756
consensus_6169#2 ------------------------------------------------------------
consensus_6169#0 GCTGGACTAAAATTCTATATATATGAAGACCTGAAATCGCGAGTTCCAGAGGATTACAAG 777
consensus_6169#1 AGATCTGTTGTATTGAAACTCTCTTGTGGTGCTTTAGCTGGTCTTTTTGGGCAAACCCTC 816
consensus_6169#2 ------------------------------------------------------------
consensus_6169#0 AGATCTGTTGTATTGAAACTCTCTTGTGGTGCTTTAGCTGGTCTTTTTGGGCAAACCCTC 837
consensus_6169#1 ACTTATCCACTGGATGTTGTCCGAAGACAGATGCAGGTTCAGAATAAGCAGCCCCATAAT 876
consensus_6169#2 ------------------------------------------------------------
consensus_6169#0 ACTTATCCACTGGATGTTGTCCGAAGACAGATGCAGGTTCAGAATAAGCAGCCCCATAAT 897
consensus_6169#1 GCGAACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGC 936
consensus_6169#2 ------------------------------------------------------------
consensus_6169#0 GCGAACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGC 957
consensus_6169#1 CAGGGGTGGAGGCAACTCTTCGCTGGCCTAAGCCTTAACTATGTGAAGGTCGTCCCTTCG 996
consensus_6169#2 ------------------------------------------------------------
consensus_6169#0 CAGGGGTGGAGGCAACTCTTCGCTGGCCTAAGCCTTAACTATGTGAAGGTCGTCCCTTCG 1017
consensus_6169#1 GTTGCTATTGGTTTCACAACATATGACATGATGAAGAATTTGCTGAGAGTGCCACCCCGA 1056
consensus_6169#2 ------------------------------------------------------------
consensus_6169#0 GTTGCTATTGGTTTCACAACATATGACATGATGAAGAATTTGCTGAGAGTGCCACCCCGA 1077
consensus_6169#1 GAGAGACTTTATCAATCGTCTGGTAACGCATGAAACGGCACTGGCCTAATTGTATCAGGA 1116
consensus_6169#2 ------------------------------------------------------------
consensus_6169#0 GAGAGACTTTATCAATCGTCTGGTAACGCATGAAACGGCACTGGCCTAATTGTATCAGGA 1137
consensus_6169#1 CAAAGTGAATTCAATAAACTCCACCCGGTGGCGTTGTATTTTCAATCATAAATTCTATCG 1176
consensus_6169#2 ------------------------------------------------------------
consensus_6169#0 CAAAGTGAATTCAATAAACTCCACCCGGTGGCGTTGTATTTTCAATCATAAATTCTATCG 1197
consensus_6169#1 CTATGTTGCATAGGAGGGAGATAAGTCGTAATTAACTGTTTGATTTGTAAATAATGATAG 1236
consensus_6169#2 ------------------------------------------------------------
consensus_6169#0 CTATGTTGCATAGGAGGGAGATAAGTCGTAATTAACTGTTTGATTTGTAAATAATGATAG 1257
consensus_6169#1 TCATTTGAGTTACTGTAGACTTGGATAAGCTTGTGTATTGAATGTGCTACCTGTATTATA 1296
consensus_6169#2 ------------------------------------------------------------
consensus_6169#0 TCATTTGAGTTACTGTAGACTTGGATAAGCTTGTGTATTGAATGTGCTACCTGTATTATA 1317
consensus_6169#1 CAATTTGATCAAAT 1310
consensus_6169#2 --------------
consensus_6169#0 CAATTTGATCAA-- 1329
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||