These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6169#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1329 fasta sequence [CTGAGTTGATTTAATGTTAATGTTAGTGGTGGTGGGGAGGGCAGATAATACGCATTCTGATCTGCCTGTCAAGTTGGGGGAGAAGAGATGGGTTCCTCACAGGAATCCACTTTTTCCTCCGCCTCAACGGCCGCGCAGGTGAATGCCTGCGCGCTGGACTTGCTCCCGGTATACGCCAAGGAGCTTATCGCCGGGGGTGCAGCCGGTGCATTCGCAAAGACTGCGGTAGCGCCGCTGGAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCCTTGGTATCCTCCAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTCTACAAGGGGAATGGCGCCAGTGTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTGTCGGTGCTGGATATTGAATAATTTTGCTCCATCAGTGGGTACAGGGCCTGTGGTTGATCTATTGGCTGGCTCAGCCGCAGGTGGGACTGCAGTTCTATGTACCTACCCATTAGACCTTGCTAGGACAAAGCTGGCATATCAGGTTTCAAATGTGGGCCAACCTGGCAATGCTTTGGGAAATGCTGGTAGACAGCCAGCATATGGTGGTATCAAGGACGTTTTCAAAACTGTTTACAAGGAAGGAGGCGCACGAGCTTTATACCGTGGAGTAGGCCCAACTCTGATCGGTATCCTACCATATGCTGGACTAAAATTCTATATATATGAAGACCTGAAATCGCGAGTTCCAGAGGATTACAAGAGATCTGTTGTATTGAAACTCTCTTGTGGTGCTTTAGCTGGTCTTTTTGGGCAAACCCTCACTTATCCACTGGATGTTGTCCGAAGACAGATGCAGGTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGCCAGGGGTGGAGGCAACTCTTCGCTGGCCTAAGCCTTAACTATGTGAAGGTCGTCCCTTCGGTTGCTATTGGTTTCACAACATATGACATGATGAAGAATTTGCTGAGAGTGCCACCCCGAGAGAGACTTTATCAATCGTCTGGTAACGCATGAAACGGCACTGGCCTAATTGTATCAGGACAAAGTGAATTCAATAAACTCCACCCGGTGGCGTTGTATTTTCAATCATAAATTCTATCGCTATGTTGCATAGGAGGGAGATAAGTCGTAATTAACTGTTTGATTTGTAAATAATGATAGTCATTTGAGTTACTGTAGACTTGGATAAGCTTGTGTATTGAATGTGCTACCTGTATTATACAATTTGATCAA] [+] EMBL AK121334 [CTGAGTTGATTTAATGTTAATGTTAGTGGTGGTGGGGAGGGCAGATAATACGCATTCTGATCTGCCTGTCAAGTTGGGGGAGAAGAGATGGGTTCCTCACAGGAATCCACTTTTTCCTCCGCCTCAACGGCCGCGCAGGTGAATGCCTGCGCGCTGGACTTGCTCCCGGTATACGCCAAGGAGCTTATCGCCGGGGGTGCAGCCGGTGCATTCGCAAAGACTGCGGTAGCGCCGCTGGAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCCTTGGTATCCTCCAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTCTACAAGGGGAATGGCGCCAGTGTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTGTCGGTGCTGGATATTGAATAATTTTGCTCCATCAGTGGGTACAGGGCCTGTGGTTGATCTATTGGCTGGCTCAGCCGCAGGTGGGACTGCAGTTCTATGTACCTACCCATTAGACCTTGCTAGGACAAAGCTGGCATATCAGGTTTCAAATGTGGGCCAACCTGGCAATGCTTTGGGAAATGCTGGTAGACAGCCAGCATATGGTGGTATCAAGGACGTTTTCAAAACTGTTTACAAGGAAGGAGGCGCACGAGCTTTATACCGTGGAGTAGGCCCAACTCTGATCGGTATCCTACCATATGCTGGACTAAAATTCTATATATATGAAGACCTGAAATCGCGAGTTCCAGAGGATTACAAGAGATCTGTTGTATTGAAACTCTCTTGTGGTGCTTTAGCTGGTCTTTTTGGGCAAACCCTCACTTATCCACTGGATGTTGTCCGAAGACAGATGCAGGTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGCCAGGGGTGGAGGCAACTCTTCGCTGGCCTAAGCCTTAACTATGTGAAGGTCGTCCCTTCGGTTGCTATTGGTTTCACAACATATGACATGATGAAGAATTTGCTGAGAGTGCCACCCCGAGAGAGACTTTATCAATCGTCTGGTAACGCATGAAACGGCACTGGCCTAATTGTATCAGGACAAAGTGAATTCAATAAACTCCACCCGGTGGCGTTGTATTTTCAATCATAAATTCTATCGCTATGTTGCATAGGAGGGAGATAAGTCGTAATTAACTGTTTGATTTGTAAATAATGATAGTCATTTGAGTTACTGTAGACTTGGATAAGCTTGTGTATTGAATGTGCTACCTGTATTATACAATTTGATCAA] consensusID : consensus_6169#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1310 fasta sequence [CCACCCAAACCCACGGCGGCAGATTCGATCTCGAATTCTCGAACTCTCTCGATCGAACCCTGTGCCCTCTGCTCCCCGCAAAATCCTCCGCATTTGATGAGTAGTCCTATCACTCTTCTTCCTCCCCGCGCAAATCCTCGCCGCCACTTGGATGCCAGGGAGCTCCACCTCGCCGCCGACCACCACCACCACCCTTCTCTCCTCCGCTCCCCGCTGGAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCCTTGGTATCCTCCAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTCTACAAGGGGAATGGCGCCAGTGTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTATCGGTGCTGGATATTGAATAATTTTGCTCCATCAGTGGGTACAGGGCCTGTGGTTGATCTATTGGCTGGCTCAGCCGCAGGTGGGACTGCAGTTCTATGTACCTACCCATTAGACCTTGCTAGGACAAAGCTGGCATATCAGGTTTCAAATGTGGGCCAACCTGGCAATGCTTTGGGAAATGCTGGTAGACAGCCAGCATATGGTGGTATCAAGGACGTTTTCAAAACTGTTTACAAGGAAGGAGGCGCACGAGCTTTATACCGTGGAGTAGGCCCAACTCTGATCGGTATCCTACCATATGCTGGACTAAAATTCTATATATATGAAGACCTGAAATCGCGAGTTCCAGAGGATTACAAGAGATCTGTTGTATTGAAACTCTCTTGTGGTGCTTTAGCTGGTCTTTTTGGGCAAACCCTCACTTATCCACTGGATGTTGTCCGAAGACAGATGCAGGTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGCCAGGGGTGGAGGCAACTCTTCGCTGGCCTAAGCCTTAACTATGTGAAGGTCGTCCCTTCGGTTGCTATTGGTTTCACAACATATGACATGATGAAGAATTTGCTGAGAGTGCCACCCCGAGAGAGACTTTATCAATCGTCTGGTAACGCATGAAACGGCACTGGCCTAATTGTATCAGGACAAAGTGAATTCAATAAACTCCACCCGGTGGCGTTGTATTTTCAATCATAAATTCTATCGCTATGTTGCATAGGAGGGAGATAAGTCGTAATTAACTGTTTGATTTGTAAATAATGATAGTCATTTGAGTTACTGTAGACTTGGATAAGCTTGTGTATTGAATGTGCTACCTGTATTATACAATTTGATCAAAT] [+] EMBL AK066090 [CCACCCAAACCCACGGCGGCAGATTCGATCTCGAATTCTCGAACTCTCTCGATCGAACCCTGTGCCCTCTGCTCCCCGCAAAATCCTCCGCATTTGATGAGTAGTCCTATCACTCTTCTTCCTCCCCGCGCAAATCCTCGCCGCCACTTGGATGCCAGGGAGCTCCACCTCGCCGCCGACCACCACCACCACCCTTCTCTCCTCCGCTCCCCGCTGGAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCCTTGGTATCCTCCAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTCTACAAGGGGAATGGCGCCAGTGTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTATCGGTGCTGGATATTGAATAATTTTGCTCCATCAGTGGGTACAGGGCCTGTGGTTGATCTATTGGCTGGCTCAGCCGCAGGTGGGACTGCAGTTCTATGTACCTACCCATTAGACCTTGCTAGGACAAAGCTGGCATATCAGGTTTCAAATGTGGGCCAACCTGGCAATGCTTTGGGAAATGCTGGTAGACAGCCAGCATATGGTGGTATCAAGGACGTTTTCAAAACTGTTTACAAGGAAGGAGGCGCACGAGCTTTATACCGTGGAGTAGGCCCAACTCTGATCGGTATCCTACCATATGCTGGACTAAAATTCTATATATATGAAGACCTGAAATCGCGAGTTCCAGAGGATTACAAGAGATCTGTTGTATTGAAACTCTCTTGTGGTGCTTTAGCTGGTCTTTTTGGGCAAACCCTCACTTATCCACTGGATGTTGTCCGAAGACAGATGCAGGTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGCCAGGGGTGGAGGCAACTCTTCGCTGGCCTAAGCCTTAACTATGTGAAGGTCGTCCCTTCGGTTGCTATTGGTTTCACAACATATGACATGATGAAGAATTTGCTGAGAGTGCCACCCCGAGAGAGACTTTATCAATCGTCTGGTAACGCATGAAACGGCACTGGCCTAATTGTATCAGGACAAAGTGAATTCAATAAACTCCACCCGGTGGCGTTGTATTTTCAATCATAAATTCTATCGCTATGTTGCATAGGAGGGAGATAAGTCGTAATTAACTGTTTGATTTGTAAATAATGATAGTCATTTGAGTTACTGTAGACTTGGATAAGCTTGTGTATTGAATGTGCTACCTGTATTATACAATTTGATCAAAT] [+] EMBL CF196357 [ TTCAAAACTGTTTACAAGGA GAGGCGCACGAGCTTTATACCGTGGAGTAGGCCCAACTCTGATCGGTATCCTACCATATGCTGGACTAAAATTCTATATATATGAAGACCTGAAATCGCGAGTTCCAGAGGATTACAAGAGATCTGTTGTATTGAAACTCTCTTGTGGTGCTTTAGCTGGTCTTTTTGGGCAAACCCTCACTTATCCACTGGATGTTGTCCGAAGACAGATGCAGGTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGCCAGGGGTGGAGGCAACTCTTCGCTGGCCTAAGCCTTAACTATGTGAAGGTCGTCCCTTCGGTTGCTATTGGTTTCACAACATATGACATGATGAAGAATTTGCTGAGAGTGCCNNNNNGAGNGAGACTTTATCAATCGTCTGGTAACGCATGAAACGGCACT ] consensusID : consensus_6169#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence [CAGCTCTCCTCCTCCTCCTCCCCCACCCAAACCCACGGTAGCGCCGCTGGAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCNTTGGTATNTTCCAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTNTACAAGGGGAATGGCGCCAGTTTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTATCGGTGCTGGATATTGAATAATTTTGCTCCATCANTGGGTACAGGGCCTGTGGTTGATCTATTGGCTGGCTCAGCCGCAGTGGGGACTNCAAT] [+] EMBL OSS0529A [CAGCTCTCCTCCTCCTCCTCCCCCACCCAAACCCACGGTAGCGCCGCTGGAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCNTTGGTATNTTCCAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTNTACAAGGGGAATGGCGCCAGTTTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTATCGGTGCTGGATATTGAATAATTTTGCTCCATCANTGGGTACAGGGCCTGTGGTTGATCTATTGGCTGGCTCAGCCGCAGTGGGGACTNCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6169#1 ----------------------CCACCCAAACCCACGGCGGCAGATTCGATCTCGAATTC 38 consensus_6169#2 ------------------------------------------------------------ consensus_6169#0 CTGAGTTGATTTAATGTTAATGTTAGTGGTGGTGGGGAGGGCAGATAATACGCATTCTGA 60 consensus_6169#1 TCGAACTCTCTCGATCGAACCCTGTGCCCTCTGCTCCCCGCAAAATCCTCCGCATTTGAT 98 consensus_6169#2 ------------------------------------------------------------ consensus_6169#0 TCTGCCTGTCAAG-TTGGGGGAGAAGAGATGGGTTCCTCACAGGAATCCACTTTTTCCTC 119 consensus_6169#1 GAGTAGTCCTATCACTCTTCTTCCTCCCCGCGCAAATCCTCGCCGCCACTTGGATGCCAG 158 consensus_6169#2 ------------------------------------------------------------ consensus_6169#0 CGCCTCAACGGCCGCGCAGGTGAATGCCTGCGCGCTGGACTTGCTCCCGGTATACGCCAA 179 consensus_6169#1 GGAGCTC--CACCTCGCCGCCGACCACCACCACCACCCTTCTCTCCTCCGCTCCCCGCTG 216 consensus_6169#2 ---------CAGCTCTCCTCCT-CCTCCTCCCCCACCCAAACCCACGGTAG-CGCCGCTG 49 consensus_6169#0 GGAGCTTATCGCCGGGGGTGCAGCCGGTGCATTCGCA-AAGACTGCGGTAG-CGCCGCTG 237 * * * ** * * * * * * ****** consensus_6169#1 GAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCCTTGGTATCCTC 276 consensus_6169#2 GAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCNTTGGTATNTTC 109 consensus_6169#0 GAGAGGGTCAAGATCTTACTGCAGACCAGAACTCATGGGTTTCAATCCCTTGGTATCCTC 297 ************************************************ ******* ** consensus_6169#1 CAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTCTACAAGGGGAATGGC 336 consensus_6169#2 CAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTNTACAAGGGGAATGGC 169 consensus_6169#0 CAATCATTGAGGAAGCTGTGGCAGTATGAGGGAATTCGAGGCTTCTACAAGGGGAATGGC 357 ******************************************** *************** consensus_6169#1 GCCAGTGTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTAT 396 consensus_6169#2 GCCAGTTTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTAT 229 consensus_6169#0 GCCAGTGTGCTTCGGATTGTTCCATATGCGGCATTGCATTACATGACTTATGAGCAGTGT 417 ****** *************************************************** * consensus_6169#1 CGGTGCTGGATATTGAATAATTTTGCTCCATCAGTGGGTACAGGGCCTGTGGTTGATCTA 456 consensus_6169#2 CGGTGCTGGATATTGAATAATTTTGCTCCATCANTGGGTACAGGGCCTGTGGTTGATCTA 289 consensus_6169#0 CGGTGCTGGATATTGAATAATTTTGCTCCATCAGTGGGTACAGGGCCTGTGGTTGATCTA 477 ********************************* ************************** consensus_6169#1 TTGGCTGGCTCAGCCGCAGGTGGGACTGCAGTTCTATGTACCTACCCATTAGACCTTGCT 516 consensus_6169#2 TTGGCTGGCTCAGCCGCAGTGGGGACTNCAAT---------------------------- 321 consensus_6169#0 TTGGCTGGCTCAGCCGCAGGTGGGACTGCAGTTCTATGTACCTACCCATTAGACCTTGCT 537 ******************* ****** ** * consensus_6169#1 AGGACAAAGCTGGCATATCAGGTTTCAAATGTGGGCCAACCTGGCAATGCTTTGGGAAAT 576 consensus_6169#2 ------------------------------------------------------------ consensus_6169#0 AGGACAAAGCTGGCATATCAGGTTTCAAATGTGGGCCAACCTGGCAATGCTTTGGGAAAT 597 consensus_6169#1 GCTGGTAGACAGCCAGCATATGGTGGTATCAAGGACGTTTTCAAAACTGTTTACAAGGAA 636 consensus_6169#2 ------------------------------------------------------------ consensus_6169#0 GCTGGTAGACAGCCAGCATATGGTGGTATCAAGGACGTTTTCAAAACTGTTTACAAGGAA 657 consensus_6169#1 GGAGGCGCACGAGCTTTATACCGTGGAGTAGGCCCAACTCTGATCGGTATCCTACCATAT 696 consensus_6169#2 ------------------------------------------------------------ consensus_6169#0 GGAGGCGCACGAGCTTTATACCGTGGAGTAGGCCCAACTCTGATCGGTATCCTACCATAT 717 consensus_6169#1 GCTGGACTAAAATTCTATATATATGAAGACCTGAAATCGCGAGTTCCAGAGGATTACAAG 756 consensus_6169#2 ------------------------------------------------------------ consensus_6169#0 GCTGGACTAAAATTCTATATATATGAAGACCTGAAATCGCGAGTTCCAGAGGATTACAAG 777 consensus_6169#1 AGATCTGTTGTATTGAAACTCTCTTGTGGTGCTTTAGCTGGTCTTTTTGGGCAAACCCTC 816 consensus_6169#2 ------------------------------------------------------------ consensus_6169#0 AGATCTGTTGTATTGAAACTCTCTTGTGGTGCTTTAGCTGGTCTTTTTGGGCAAACCCTC 837 consensus_6169#1 ACTTATCCACTGGATGTTGTCCGAAGACAGATGCAGGTTCAGAATAAGCAGCCCCATAAT 876 consensus_6169#2 ------------------------------------------------------------ consensus_6169#0 ACTTATCCACTGGATGTTGTCCGAAGACAGATGCAGGTTCAGAATAAGCAGCCCCATAAT 897 consensus_6169#1 GCGAACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGC 936 consensus_6169#2 ------------------------------------------------------------ consensus_6169#0 GCGAACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGC 957 consensus_6169#1 CAGGGGTGGAGGCAACTCTTCGCTGGCCTAAGCCTTAACTATGTGAAGGTCGTCCCTTCG 996 consensus_6169#2 ------------------------------------------------------------ consensus_6169#0 CAGGGGTGGAGGCAACTCTTCGCTGGCCTAAGCCTTAACTATGTGAAGGTCGTCCCTTCG 1017 consensus_6169#1 GTTGCTATTGGTTTCACAACATATGACATGATGAAGAATTTGCTGAGAGTGCCACCCCGA 1056 consensus_6169#2 ------------------------------------------------------------ consensus_6169#0 GTTGCTATTGGTTTCACAACATATGACATGATGAAGAATTTGCTGAGAGTGCCACCCCGA 1077 consensus_6169#1 GAGAGACTTTATCAATCGTCTGGTAACGCATGAAACGGCACTGGCCTAATTGTATCAGGA 1116 consensus_6169#2 ------------------------------------------------------------ consensus_6169#0 GAGAGACTTTATCAATCGTCTGGTAACGCATGAAACGGCACTGGCCTAATTGTATCAGGA 1137 consensus_6169#1 CAAAGTGAATTCAATAAACTCCACCCGGTGGCGTTGTATTTTCAATCATAAATTCTATCG 1176 consensus_6169#2 ------------------------------------------------------------ consensus_6169#0 CAAAGTGAATTCAATAAACTCCACCCGGTGGCGTTGTATTTTCAATCATAAATTCTATCG 1197 consensus_6169#1 CTATGTTGCATAGGAGGGAGATAAGTCGTAATTAACTGTTTGATTTGTAAATAATGATAG 1236 consensus_6169#2 ------------------------------------------------------------ consensus_6169#0 CTATGTTGCATAGGAGGGAGATAAGTCGTAATTAACTGTTTGATTTGTAAATAATGATAG 1257 consensus_6169#1 TCATTTGAGTTACTGTAGACTTGGATAAGCTTGTGTATTGAATGTGCTACCTGTATTATA 1296 consensus_6169#2 ------------------------------------------------------------ consensus_6169#0 TCATTTGAGTTACTGTAGACTTGGATAAGCTTGTGTATTGAATGTGCTACCTGTATTATA 1317 consensus_6169#1 CAATTTGATCAAAT 1310 consensus_6169#2 -------------- consensus_6169#0 CAATTTGATCAA-- 1329 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||