These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_617#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2644 fasta sequence [GGTAATGATCGCATACTTGAATCATCCAAACAGGTCATCGAGATCAGTGAAGACTATCTCCCGGTTGGCTTACCAGCCAAGAAAGTTGGAGCAGAACTACAAGCCTCTGGTTGCAGAGACACAAAAAACTGCCAATATAGCTGCCAGTCGAGCATTGGTCGACTACAGCATGGAAAATTTAGATGCTCCAATTTTATCAATTGAGGAGGCTGTGAGAAGTAGTAGTTATTTTGAAATCCTACCATTTCTTCTTCCCCAAAAGATTGGTGATTTCTCAAAAGGAATGGAAGAAGCTGACCAGAAAATATATTCAACTGAGGTGAACCTTCACTCGCAGTATTACTTTTACATGGAAACACAAACTGCGCTAGCCATACCTGAGGAGGATAACTGTATGGTCGTGTATAGCTCAAGCCAGTGCCCGGAGGTAGCACAAGAAACCATTGCAAAATGCCTGGGTTTACCTTGTCATAATGTCCGTGTTATTACTAGAAGAGTTGGTGGTGGCTTTGGAGGCAAAGCTGTCAGATCGTTACCAGTGGCAACAGCTTGTGCACTTTCAGCATTTAAGTTGCAGCGTCCTGTCCGAATATATCTTGATCGCAAGACTGACATGATAATGACTGGGGGCCGGCATCCCATGAAAATACGCTATTCTGTAGGCTTCAAATCCGATGGGAACATCACAGCGCTACATATAGAATTGTTGGTAAATGCCGGAATAACCCAGGATGTTAGTCCAGTGATTCCTCACAATTTCATAGAGGCTCTGAAGAAATATAATTGGGGTGCCTTCTCCTATGATGCAAGAATCTGCAAAACAAACATTGCAACCAGATCCGCAATGCGGGGTCCTGGAGAAGTGCAGGGTTCTTATGTTGCTGAAGCTATTATTGAGCATGTTGCTGCTGTGCTCTCTACTGATGTTAATTTGGTCAGGCAGAGAAATCTTCACACAGTGGAGAGCCTCAGTTTGTATCATAGTGAATGCATGGAAGATGCCTTGGGGTATACACTTCCCTCTATCTGCAATCAGTTGATTACATCAGCAAATTACCAGCACCAACTTGAAATGATTCGGTCCTTCAACAAAAGCAACAGATGGAAAAAGCGGGGGCTTTCTGTCGTGCCGATAGTGCATAAATTCGCATCTCGGCCAACGCCTGGTAAAGTGTCTATTCTTAATGATGGATCCGTTGCTGTTGAAGTTGGAGGCATTGAACTTGGCCAAGGGCTTTGGACAAAAGTGAAGCAGATGGCAGCGTTCGGTCTTGGACAGCTTTGGACTGATAGAAGGCAAGAACTGTTGGAGAGAGTGAGAATTATTCAAGCAGATACACTAAGTGTGATACAGGGAGGGTGGACCACAGGGAGTACAACATCAGAATCTAGCTGCGAGGCAGTTCATCGTGCCTGCAATATCTTGGTCGACAGGCTGAAACCACTCAAGGAGCAATTGCAAGAAAAACAAGGAACAGTTTCATGGGATGAGCTTATTTCACAGGCAAAAATGGTAGGTGTGGACTTATCAGCTAAAGAACTCTACGTTCCCGGGGCTTCTGGTTCCTATCTAAACTATGGGGCAGCTGCTAGTGAGGTAGAGATTGATCTTCTGACAGGAGCGACCACAATTTTGCGTAGTGATCTTATATATGATTGTGGACGGAGTTTAAATCCTGCTGTTGACTTGGGGCAGGTGAGCATTTTATGGGTTTTGTACCAGTTTCTTGTTTCTTCACCTTCAAAAGGTTCGTCAGTTTCTTCCGTACAGAACCTAAAATTCCGTTTTCCATTTGTTCTATTAATAAATTGACAAGTCAGAAATTGATGTCAGGTTTACAGCCTTCTAGTCAGTAGCAGGTTGTGCCAATTTTTTCTAATATTAAATGGTTCATGTGTCATCTTCTTTTAGTTTTACTGGCACGCTATACTTATATATTAACATATTTGATCCTTTGCTCTCTTCTTTTTCAGGTTGAAGGGGCTTTTGTCCAGGGAATTGGTTATTTCATGAACGAGGAGTACGTGACGAACTCAGATGGGCTGCTTGTCTCAGACGGGACTTGGACATACAAGATTCCTACGGTGGACACCATCCCAAAACAGTTCAACGTTAAGCTACTCAACAGTGGATTCCACAAGAAACGTGTGCTCTCTTCAAAAGCTTCTGGGGAGCCACCTTTGCTACTTGCTGCCTCGGTGCATTGTGCAACAAGGGAAGCAATTAGAGCAGCAAGGGAGGAGTATCACTGTTCCAGGTCTGGATCTTCACCTCCCTTCTTTGATCTTGAAGTTCCTGCCATCATGCCCACGGTGAAGGAGCTATGCGGCTTAGACAACGTGGAGAAGTATTTGGAGAGTATCTGCTCGAAATAAACAGCCAAGTTGGCAATCTTACCAGACGGCATATGTCTTCTTTTTTTAGTCCTTTAGCAAAGTTTTTTTTAGTCCTTTAGCAATGGAGATAACACTGCCAGTTTTTTTTTCTCACCAAAAAAAAAAAGGAGGTACTCAATAGTGAACATGAGCATAATGTATATTAATAGTGGTGAACATGAGCAAAGAAAATAGTATTTACTTAATTTAATAGTGGTGAACATAAGCAGGCGTTGCATAATGTATATTGAGCGTATAAAGAGGGATT] [+] EMBL AK122123 [GGTAATGATCGCATACTTGAATCATCCAAACAGGTCATCGAGATCAGTGAAGACTATCTCCCGGTTGGCTTACCAGCCAAGAAAGTTGGAGCAGAACTACAAGCCTCTGGTTGCAGAGACACAAAAAACTGCCAATATAGCTGCCAGTCGAGCATTGGTCGACTACAGCATGGAAAATTTAGATGCTCCAATTTTATCAATTGAGGAGGCTGTGAGAAGTAGTAGTTATTTTGAAATCCTACCATTTCTTCTTCCCCAAAAGATTGGTGATTTCTCAAAAGGAATGGAAGAAGCTGACCAGAAAATATATTCAACTGAGGTGAACCTTCACTCGCAGTATTACTTTTACATGGAAACACAAACTGCGCTAGCCATACCTGAGGAGGATAACTGTATGGTCGTGTATAGCTCAAGCCAGTGCCCGGAGGTAGCACAAGAAACCATTGCAAAATGCCTGGGTTTACCTTGTCATAATGTCCGTGTTATTACTAGAAGAGTTGGTGGTGGCTTTGGAGGCAAAGCTGTCAGATCGTTACCAGTGGCAACAGCTTGTGCACTTTCAGCATTTAAGTTGCAGCGTCCTGTCCGAATATATCTTGATCGCAAGACTGACATGATAATGACTGGGGGCCGGCATCCCATGAAAATACGCTATTCTGTAGGCTTCAAATCCGATGGGAACATCACAGCGCTACATATAGAATTGTTGGTAAATGCCGGAATAACCCAGGATGTTAGTCCAGTGATTCCTCACAATTTCATAGAGGCTCTGAAGAAATATAATTGGGGTGCCTTCTCCTATGATGCAAGAATCTGCAAAACAAACATTGCAACCAGATCCGCAATGCGGGGTCCTGGAGAAGTGCAGGGTTCTTATGTTGCTGAAGCTATTATTGAGCATGTTGCTGCTGTGCTCTCTACTGATGTTAATTTGGTCAGGCAGAGAAATCTTCACACAGTGGAGAGCCTCAGTTTGTATCATAGTGAATGCATGGAAGATGCCTTGGGGTATACACTTCCCTCTATCTGCAATCAGTTGATTACATCAGCAAATTACCAGCACCAACTTGAAATGATTCGGTCCTTCAACAAAAGCAACAGATGGAAAAAGCGGGGGCTTTCTGTCGTGCCGATAGTGCATAAATTCGCATCTCGGCCAACGCCTGGTAAAGTGTCTATTCTTAATGATGGATCCGTTGCTGTTGAAGTTGGAGGCATTGAACTTGGCCAAGGGCTTTGGACAAAAGTGAAGCAGATGGCAGCGTTCGGTCTTGGACAGCTTTGGACTGATAGAAGGCAAGAACTGTTGGAGAGAGTGAGAATTATTCAAGCAGATACACTAAGTGTGATACAGGGAGGGTGGACCACAGGGAGTACAACATCAGAATCTAGCTGCGAGGCAGTTCATCGTGCCTGCAATATCTTGGTCGACAGGCTGAAACCACTCAAGGAGCAATTGCAAGAAAAACAAGGAACAGTTTCATGGGATGAGCTTATTTCACAGGCAAAAATGGTAGGTGTGGACTTATCAGCTAAAGAACTCTACGTTCCCGGGGCTTCTGGTTCCTATCTAAACTATGGGGCAGCTGCTAGTGAGGTAGAGATTGATCTTCTGACAGGAGCGACCACAATTTTGCGTAGTGATCTTATATATGATTGTGGACGGAGTTTAAATCCTGCTGTTGACTTGGGGCAGGTGAGCATTTTATGGGTTTTGTACCAGTTTCTTGTTTCTTCACCTTCAAAAGGTTCGTCAGTTTCTTCCGTACAGAACCTAAAATTCCGTTTTCCATTTGTTCTATTAATAAATTGACAAGTCAGAAATTGATGTCAGGTTTACAGCCTTCTAGTCAGTAGCAGGTTGTGCCAATTTTTTCTAATATTAAATGGTTCATGTGTCATCTTCTTTTAGTTTTACTGGCACGCTATACTTATATATTAACATATTTGATCCTTTGCTCTCTTCTTTTTCAGGTTGAAGGGGCTTTTGTCCAGGGAATTGGTTATTTCATGAACGAGGAGTACGTGACGAACTCAGATGGGCTGCTTGTCTCAGACGGGACTTGGACATACAAGATTCCTACGGTGGACACCATCCCAAAACAGTTCAACGTTAAGCTACTCAACAGTGGATTCCACAAGAAACGTGTGCTCTCTTCAAAAGCTTCTGGGGAGCCACCTTTGCTACTTGCTGCCTCGGTGCATTGTGCAACAAGGGAAGCAATTAGAGCAGCAAGGGAGGAGTATCACTGTTCCAGGTCTGGATCTTCACCTCCCTTCTTTGATCTTGAAGTTCCTGCCATCATGCCCACGGTGAAGGAGCTATGCGGCTTAGACAACGTGGAGAAGTATTTGGAGAGTATCTGCTCGAAATAAACAGCCAAGTTGGCAATCTTACCAGACGGCATATGTCTTCTTTTTTTAGTCCTTTAGCAAAGTTTTTTTTAGTCCTTTAGCAATGGAGATAACACTGCCAGTTTTTTTTTCTCACCAAAAAAAAAAAGGAGGTACTCAATAGTGAACATGAGCATAATGTATATTAATAGTGGTGAACATGAGCAAAGAAAATAGTATTTACTTAATTTAATAGTGGTGAACATAAGCAGGCGTTGCATAATGTATATTGAGCGTATAAAGAGGGATT] consensusID : consensus_617#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [GAAATTCGAATATCTTTGCTATATCAAATTACAAACCTAGATCTACAATTGTTATGCATTCAACCAATTAACAGTACTCATAATTTTTACACTGCCCACTACCAACGTAGATACTCTCTTTTTCTCCAGTATACTTGGTAATTCTAGGTCTTGATTTCAAGTCTGTTTGGTGTTAGCTTCTGGGGCACAGTTAATAGTCACCCTTTTGTTCTCCCAACTTTCTGTGTCACTAACGCTTCCTGGTTGCAGCTTCTGGGGAGCCACCTTTGCTACTTGCTGCCTCGGTGCATTGTGCAACAAGGGAAGCAATTAGAGCAGCAAGGGAGGAGTATCACTGTTCCAGGTCTGGATCTTCACCTCCCTTCTTTGATCTTGAAGTTCCTGCCATCATGCCCACGGTGAAGGAGCTATGCGGCTTAGACAACGTGGAGAAGTATTTGGAGAGTATCTGCTCGAAATAAACAGCCAAGTTGGCAATCTTACCAGACGGCATATGTCTTCTT] [+] EMBL CA766368 [GAAATTCGAATATCTTTGCTATATCAAATTACAAACCTAGATCTACAATTGTTATGCATTCAACCAATTAACAGTACTCATAATTTTTACACTGCCCACTACCAACGTAGATACTCTCTTTTTCTCCAGTATACTTGGTAATTCTAGGTCTTGATTTCAAGTCTGTTTGGTGTTAGCTTCTGGGGCACAGTTAATAGTCACCCTTTTGTTCTCCCAACTTTCTGTGTCACTAACGCTTCCTGGTTGCAGCTTCTGGGGAGCCACCTTTGCTACTTGCTGCCTCGGTGCATTGTGCAACAAGGGAAGCAATTAGAGCAGCAAGGGAGGAGTATCACTGTTCCAGGTCTGGATCTTCACCTCCCTTCTTTGATCTTGAAGTTCCTGCCATCATGCCCACGGTGAAGGAGCTATGCGGCTTAGACAACGTGGAGAAGTATTTGGAGAGTATCTGCTCGAAATAAACAGCCAAGTTGGCAATCTTACCAGACGGCATATGTCTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_617#0 GGTAATGATCGCATACTTGAATCATCCAAACAGGTCATCGAGATCAGTGAAGACTATCTC 60 consensus_617#1 ------------------------------------------------------------ consensus_617#0 CCGGTTGGCTTACCAGCCAAGAAAGTTGGAGCAGAACTACAAGCCTCTGGTTGCAGAGAC 120 consensus_617#1 ------------------------------------------------------------ consensus_617#0 ACAAAAAACTGCCAATATAGCTGCCAGTCGAGCATTGGTCGACTACAGCATGGAAAATTT 180 consensus_617#1 ------------------------------------------------------------ consensus_617#0 AGATGCTCCAATTTTATCAATTGAGGAGGCTGTGAGAAGTAGTAGTTATTTTGAAATCCT 240 consensus_617#1 ------------------------------------------------------------ consensus_617#0 ACCATTTCTTCTTCCCCAAAAGATTGGTGATTTCTCAAAAGGAATGGAAGAAGCTGACCA 300 consensus_617#1 ------------------------------------------------------------ consensus_617#0 GAAAATATATTCAACTGAGGTGAACCTTCACTCGCAGTATTACTTTTACATGGAAACACA 360 consensus_617#1 ------------------------------------------------------------ consensus_617#0 AACTGCGCTAGCCATACCTGAGGAGGATAACTGTATGGTCGTGTATAGCTCAAGCCAGTG 420 consensus_617#1 ------------------------------------------------------------ consensus_617#0 CCCGGAGGTAGCACAAGAAACCATTGCAAAATGCCTGGGTTTACCTTGTCATAATGTCCG 480 consensus_617#1 ------------------------------------------------------------ consensus_617#0 TGTTATTACTAGAAGAGTTGGTGGTGGCTTTGGAGGCAAAGCTGTCAGATCGTTACCAGT 540 consensus_617#1 ------------------------------------------------------------ consensus_617#0 GGCAACAGCTTGTGCACTTTCAGCATTTAAGTTGCAGCGTCCTGTCCGAATATATCTTGA 600 consensus_617#1 ------------------------------------------------------------ consensus_617#0 TCGCAAGACTGACATGATAATGACTGGGGGCCGGCATCCCATGAAAATACGCTATTCTGT 660 consensus_617#1 ------------------------------------------------------------ consensus_617#0 AGGCTTCAAATCCGATGGGAACATCACAGCGCTACATATAGAATTGTTGGTAAATGCCGG 720 consensus_617#1 ------------------------------------------------------------ consensus_617#0 AATAACCCAGGATGTTAGTCCAGTGATTCCTCACAATTTCATAGAGGCTCTGAAGAAATA 780 consensus_617#1 ------------------------------------------------------------ consensus_617#0 TAATTGGGGTGCCTTCTCCTATGATGCAAGAATCTGCAAAACAAACATTGCAACCAGATC 840 consensus_617#1 ------------------------------------------------------------ consensus_617#0 CGCAATGCGGGGTCCTGGAGAAGTGCAGGGTTCTTATGTTGCTGAAGCTATTATTGAGCA 900 consensus_617#1 ------------------------------------------------------------ consensus_617#0 TGTTGCTGCTGTGCTCTCTACTGATGTTAATTTGGTCAGGCAGAGAAATCTTCACACAGT 960 consensus_617#1 ------------------------------------------------------------ consensus_617#0 GGAGAGCCTCAGTTTGTATCATAGTGAATGCATGGAAGATGCCTTGGGGTATACACTTCC 1020 consensus_617#1 ------------------------------------------------------------ consensus_617#0 CTCTATCTGCAATCAGTTGATTACATCAGCAAATTACCAGCACCAACTTGAAATGATTCG 1080 consensus_617#1 ------------------------------------------------------------ consensus_617#0 GTCCTTCAACAAAAGCAACAGATGGAAAAAGCGGGGGCTTTCTGTCGTGCCGATAGTGCA 1140 consensus_617#1 ------------------------------------------------------------ consensus_617#0 TAAATTCGCATCTCGGCCAACGCCTGGTAAAGTGTCTATTCTTAATGATGGATCCGTTGC 1200 consensus_617#1 ------------------------------------------------------------ consensus_617#0 TGTTGAAGTTGGAGGCATTGAACTTGGCCAAGGGCTTTGGACAAAAGTGAAGCAGATGGC 1260 consensus_617#1 ------------------------------------------------------------ consensus_617#0 AGCGTTCGGTCTTGGACAGCTTTGGACTGATAGAAGGCAAGAACTGTTGGAGAGAGTGAG 1320 consensus_617#1 ------------------------------------------------------------ consensus_617#0 AATTATTCAAGCAGATACACTAAGTGTGATACAGGGAGGGTGGACCACAGGGAGTACAAC 1380 consensus_617#1 ------------------------------------------------------------ consensus_617#0 ATCAGAATCTAGCTGCGAGGCAGTTCATCGTGCCTGCAATATCTTGGTCGACAGGCTGAA 1440 consensus_617#1 ------------------------------------------------------------ consensus_617#0 ACCACTCAAGGAGCAATTGCAAGAAAAACAAGGAACAGTTTCATGGGATGAGCTTATTTC 1500 consensus_617#1 ------------------------------------------------------------ consensus_617#0 ACAGGCAAAAATGGTAGGTGTGGACTTATCAGCTAAAGAACTCTACGTTCCCGGGGCTTC 1560 consensus_617#1 ------------------------------------------------------------ consensus_617#0 TGGTTCCTATCTAAACTATGGGGCAGCTGCTAGTGAGGTAGAGATTGATCTTCTGACAGG 1620 consensus_617#1 ------------------------------------------------------------ consensus_617#0 AGCGACCACAATTTTGCGTAGTGATCTTATATATGATTGTGGACGGAGTTTAAATCCTGC 1680 consensus_617#1 ------------------------------------------------------------ consensus_617#0 TGTTGACTTGGGGCAGGTGAGCATTTTATGGGTTTTGTACCAGTTTCTTGTTTCTTCACC 1740 consensus_617#1 ------------------------------------------------------------ consensus_617#0 TTCAAAAGGTTCGTCAGTTTCTTCCGTACAGAACCTAAAATTCCGTTTTCCATTTGTTCT 1800 consensus_617#1 ------------------------------------------------------------ consensus_617#0 ATTAATAAATTGACAAGTCAGAAATTGATGTCAGGTTTACAGCCTTCTAGTCAGTAGCAG 1860 consensus_617#1 ------------------------------------------------------------ consensus_617#0 GTTGTGCCAATTTTTTCTAATATTAAATGGTTCATGTGTCATCTTCTTTTAGTTTTACTG 1920 consensus_617#1 ------------------GAAATTCGAATATCTTTGCTATATCAAATTACAAACCTA--G 40 * *** * * ** *** ** * ** * consensus_617#0 GCACGCTATACTTATATATTAACATATTTGATCCTTTGCTCTCTTCTTTTTCAGGTTGAA 1980 consensus_617#1 ATCTACAATTGTTATGCATTCAACCAATTAAC----AGTACTCATAATTTTTACACTG-- 94 * ** **** *** * * ** * * *** * **** * ** consensus_617#0 GGGGCTTTTGTCCAGGGAATTGGTTATTTCATGAACGAGGAGTACGTGACGAACTCAGAT 2040 consensus_617#1 ---CCCACTACCAACGTAGATACTCTCTTTTTCTCC--AGTATACTTGGTAATTCTAGGT 149 * * * * * * * * ** * * * *** ** * ** * consensus_617#0 GGGCTGCTTGTCTCAGACGGGACTTGGACATACAAGATTCCTACGGTGGACACCATCCCA 2100 consensus_617#1 ------CTTGATTTCAAGTCTGTTTGG---TGTTAGCTTCTG-----GGGCACAGTT--- 192 **** * * **** * ** *** ** *** * consensus_617#0 AAACAGTTCAACGTTAAGCTACTCAACAGTGGATTCCACAAGAAACGTGTGCTCTCTTCA 2160 consensus_617#1 -AATAGTCACCCTTTTGTTCTCCCAACTTTCTGTGTCAC---TAACGCTTCCTGGTTGCA 248 ** *** * ** * **** * * *** **** * ** * ** consensus_617#0 AAAGCTTCTGGGGAGCCACCTTTGCTACTTGCTGCCTCGGTGCATTGTGCAACAAGGGAA 2220 consensus_617#1 ---GCTTCTGGGGAGCCACCTTTGCTACTTGCTGCCTCGGTGCATTGTGCAACAAGGGAA 305 ********************************************************* consensus_617#0 GCAATTAGAGCAGCAAGGGAGGAGTATCACTGTTCCAGGTCTGGATCTTCACCTCCCTTC 2280 consensus_617#1 GCAATTAGAGCAGCAAGGGAGGAGTATCACTGTTCCAGGTCTGGATCTTCACCTCCCTTC 365 ************************************************************ consensus_617#0 TTTGATCTTGAAGTTCCTGCCATCATGCCCACGGTGAAGGAGCTATGCGGCTTAGACAAC 2340 consensus_617#1 TTTGATCTTGAAGTTCCTGCCATCATGCCCACGGTGAAGGAGCTATGCGGCTTAGACAAC 425 ************************************************************ consensus_617#0 GTGGAGAAGTATTTGGAGAGTATCTGCTCGAAATAAACAGCCAAGTTGGCAATCTTACCA 2400 consensus_617#1 GTGGAGAAGTATTTGGAGAGTATCTGCTCGAAATAAACAGCCAAGTTGGCAATCTTACCA 485 ************************************************************ consensus_617#0 GACGGCATATGTCTTCTTTTTTTAGTCCTTTAGCAAAGTTTTTTTTAGTCCTTTAGCAAT 2460 consensus_617#1 GACGGCATATGTCTTCTT------------------------------------------ 503 ****************** consensus_617#0 GGAGATAACACTGCCAGTTTTTTTTTCTCACCAAAAAAAAAAAGGAGGTACTCAATAGTG 2520 consensus_617#1 ------------------------------------------------------------ consensus_617#0 AACATGAGCATAATGTATATTAATAGTGGTGAACATGAGCAAAGAAAATAGTATTTACTT 2580 consensus_617#1 ------------------------------------------------------------ consensus_617#0 AATTTAATAGTGGTGAACATAAGCAGGCGTTGCATAATGTATATTGAGCGTATAAAGAGG 2640 consensus_617#1 ------------------------------------------------------------ consensus_617#0 GATT 2644 consensus_617#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||