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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_617#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2644 fasta sequence
[GGTAATGATCGCATACTTGAATCATCCAAACAGGTCATCGAGATCAGTGAAGACTATCTCCCGGTTGGCTTACCAGCCAAGAAAGTTGGAGCAGAACTACAAGCCTCTGGTTGCAGAGACACAAAAAACTGCCAATATAGCTGCCAGTCGAGCATTGGTCGACTACAGCATGGAAAATTTAGATGCTCCAATTTTATCAATTGAGGAGGCTGTGAGAAGTAGTAGTTATTTTGAAATCCTACCATTTCTTCTTCCCCAAAAGATTGGTGATTTCTCAAAAGGAATGGAAGAAGCTGACCAGAAAATATATTCAACTGAGGTGAACCTTCACTCGCAGTATTACTTTTACATGGAAACACAAACTGCGCTAGCCATACCTGAGGAGGATAACTGTATGGTCGTGTATAGCTCAAGCCAGTGCCCGGAGGTAGCACAAGAAACCATTGCAAAATGCCTGGGTTTACCTTGTCATAATGTCCGTGTTATTACTAGAAGAGTTGGTGGTGGCTTTGGAGGCAAAGCTGTCAGATCGTTACCAGTGGCAACAGCTTGTGCACTTTCAGCATTTAAGTTGCAGCGTCCTGTCCGAATATATCTTGATCGCAAGACTGACATGATAATGACTGGGGGCCGGCATCCCATGAAAATACGCTATTCTGTAGGCTTCAAATCCGATGGGAACATCACAGCGCTACATATAGAATTGTTGGTAAATGCCGGAATAACCCAGGATGTTAGTCCAGTGATTCCTCACAATTTCATAGAGGCTCTGAAGAAATATAATTGGGGTGCCTTCTCCTATGATGCAAGAATCTGCAAAACAAACATTGCAACCAGATCCGCAATGCGGGGTCCTGGAGAAGTGCAGGGTTCTTATGTTGCTGAAGCTATTATTGAGCATGTTGCTGCTGTGCTCTCTACTGATGTTAATTTGGTCAGGCAGAGAAATCTTCACACAGTGGAGAGCCTCAGTTTGTATCATAGTGAATGCATGGAAGATGCCTTGGGGTATACACTTCCCTCTATCTGCAATCAGTTGATTACATCAGCAAATTACCAGCACCAACTTGAAATGATTCGGTCCTTCAACAAAAGCAACAGATGGAAAAAGCGGGGGCTTTCTGTCGTGCCGATAGTGCATAAATTCGCATCTCGGCCAACGCCTGGTAAAGTGTCTATTCTTAATGATGGATCCGTTGCTGTTGAAGTTGGAGGCATTGAACTTGGCCAAGGGCTTTGGACAAAAGTGAAGCAGATGGCAGCGTTCGGTCTTGGACAGCTTTGGACTGATAGAAGGCAAGAACTGTTGGAGAGAGTGAGAATTATTCAAGCAGATACACTAAGTGTGATACAGGGAGGGTGGACCACAGGGAGTACAACATCAGAATCTAGCTGCGAGGCAGTTCATCGTGCCTGCAATATCTTGGTCGACAGGCTGAAACCACTCAAGGAGCAATTGCAAGAAAAACAAGGAACAGTTTCATGGGATGAGCTTATTTCACAGGCAAAAATGGTAGGTGTGGACTTATCAGCTAAAGAACTCTACGTTCCCGGGGCTTCTGGTTCCTATCTAAACTATGGGGCAGCTGCTAGTGAGGTAGAGATTGATCTTCTGACAGGAGCGACCACAATTTTGCGTAGTGATCTTATATATGATTGTGGACGGAGTTTAAATCCTGCTGTTGACTTGGGGCAGGTGAGCATTTTATGGGTTTTGTACCAGTTTCTTGTTTCTTCACCTTCAAAAGGTTCGTCAGTTTCTTCCGTACAGAACCTAAAATTCCGTTTTCCATTTGTTCTATTAATAAATTGACAAGTCAGAAATTGATGTCAGGTTTACAGCCTTCTAGTCAGTAGCAGGTTGTGCCAATTTTTTCTAATATTAAATGGTTCATGTGTCATCTTCTTTTAGTTTTACTGGCACGCTATACTTATATATTAACATATTTGATCCTTTGCTCTCTTCTTTTTCAGGTTGAAGGGGCTTTTGTCCAGGGAATTGGTTATTTCATGAACGAGGAGTACGTGACGAACTCAGATGGGCTGCTTGTCTCAGACGGGACTTGGACATACAAGATTCCTACGGTGGACACCATCCCAAAACAGTTCAACGTTAAGCTACTCAACAGTGGATTCCACAAGAAACGTGTGCTCTCTTCAAAAGCTTCTGGGGAGCCACCTTTGCTACTTGCTGCCTCGGTGCATTGTGCAACAAGGGAAGCAATTAGAGCAGCAAGGGAGGAGTATCACTGTTCCAGGTCTGGATCTTCACCTCCCTTCTTTGATCTTGAAGTTCCTGCCATCATGCCCACGGTGAAGGAGCTATGCGGCTTAGACAACGTGGAGAAGTATTTGGAGAGTATCTGCTCGAAATAAACAGCCAAGTTGGCAATCTTACCAGACGGCATATGTCTTCTTTTTTTAGTCCTTTAGCAAAGTTTTTTTTAGTCCTTTAGCAATGGAGATAACACTGCCAGTTTTTTTTTCTCACCAAAAAAAAAAAGGAGGTACTCAATAGTGAACATGAGCATAATGTATATTAATAGTGGTGAACATGAGCAAAGAAAATAGTATTTACTTAATTTAATAGTGGTGAACATAAGCAGGCGTTGCATAATGTATATTGAGCGTATAAAGAGGGATT]
[+] EMBL AK122123 [GGTAATGATCGCATACTTGAATCATCCAAACAGGTCATCGAGATCAGTGAAGACTATCTCCCGGTTGGCTTACCAGCCAAGAAAGTTGGAGCAGAACTACAAGCCTCTGGTTGCAGAGACACAAAAAACTGCCAATATAGCTGCCAGTCGAGCATTGGTCGACTACAGCATGGAAAATTTAGATGCTCCAATTTTATCAATTGAGGAGGCTGTGAGAAGTAGTAGTTATTTTGAAATCCTACCATTTCTTCTTCCCCAAAAGATTGGTGATTTCTCAAAAGGAATGGAAGAAGCTGACCAGAAAATATATTCAACTGAGGTGAACCTTCACTCGCAGTATTACTTTTACATGGAAACACAAACTGCGCTAGCCATACCTGAGGAGGATAACTGTATGGTCGTGTATAGCTCAAGCCAGTGCCCGGAGGTAGCACAAGAAACCATTGCAAAATGCCTGGGTTTACCTTGTCATAATGTCCGTGTTATTACTAGAAGAGTTGGTGGTGGCTTTGGAGGCAAAGCTGTCAGATCGTTACCAGTGGCAACAGCTTGTGCACTTTCAGCATTTAAGTTGCAGCGTCCTGTCCGAATATATCTTGATCGCAAGACTGACATGATAATGACTGGGGGCCGGCATCCCATGAAAATACGCTATTCTGTAGGCTTCAAATCCGATGGGAACATCACAGCGCTACATATAGAATTGTTGGTAAATGCCGGAATAACCCAGGATGTTAGTCCAGTGATTCCTCACAATTTCATAGAGGCTCTGAAGAAATATAATTGGGGTGCCTTCTCCTATGATGCAAGAATCTGCAAAACAAACATTGCAACCAGATCCGCAATGCGGGGTCCTGGAGAAGTGCAGGGTTCTTATGTTGCTGAAGCTATTATTGAGCATGTTGCTGCTGTGCTCTCTACTGATGTTAATTTGGTCAGGCAGAGAAATCTTCACACAGTGGAGAGCCTCAGTTTGTATCATAGTGAATGCATGGAAGATGCCTTGGGGTATACACTTCCCTCTATCTGCAATCAGTTGATTACATCAGCAAATTACCAGCACCAACTTGAAATGATTCGGTCCTTCAACAAAAGCAACAGATGGAAAAAGCGGGGGCTTTCTGTCGTGCCGATAGTGCATAAATTCGCATCTCGGCCAACGCCTGGTAAAGTGTCTATTCTTAATGATGGATCCGTTGCTGTTGAAGTTGGAGGCATTGAACTTGGCCAAGGGCTTTGGACAAAAGTGAAGCAGATGGCAGCGTTCGGTCTTGGACAGCTTTGGACTGATAGAAGGCAAGAACTGTTGGAGAGAGTGAGAATTATTCAAGCAGATACACTAAGTGTGATACAGGGAGGGTGGACCACAGGGAGTACAACATCAGAATCTAGCTGCGAGGCAGTTCATCGTGCCTGCAATATCTTGGTCGACAGGCTGAAACCACTCAAGGAGCAATTGCAAGAAAAACAAGGAACAGTTTCATGGGATGAGCTTATTTCACAGGCAAAAATGGTAGGTGTGGACTTATCAGCTAAAGAACTCTACGTTCCCGGGGCTTCTGGTTCCTATCTAAACTATGGGGCAGCTGCTAGTGAGGTAGAGATTGATCTTCTGACAGGAGCGACCACAATTTTGCGTAGTGATCTTATATATGATTGTGGACGGAGTTTAAATCCTGCTGTTGACTTGGGGCAGGTGAGCATTTTATGGGTTTTGTACCAGTTTCTTGTTTCTTCACCTTCAAAAGGTTCGTCAGTTTCTTCCGTACAGAACCTAAAATTCCGTTTTCCATTTGTTCTATTAATAAATTGACAAGTCAGAAATTGATGTCAGGTTTACAGCCTTCTAGTCAGTAGCAGGTTGTGCCAATTTTTTCTAATATTAAATGGTTCATGTGTCATCTTCTTTTAGTTTTACTGGCACGCTATACTTATATATTAACATATTTGATCCTTTGCTCTCTTCTTTTTCAGGTTGAAGGGGCTTTTGTCCAGGGAATTGGTTATTTCATGAACGAGGAGTACGTGACGAACTCAGATGGGCTGCTTGTCTCAGACGGGACTTGGACATACAAGATTCCTACGGTGGACACCATCCCAAAACAGTTCAACGTTAAGCTACTCAACAGTGGATTCCACAAGAAACGTGTGCTCTCTTCAAAAGCTTCTGGGGAGCCACCTTTGCTACTTGCTGCCTCGGTGCATTGTGCAACAAGGGAAGCAATTAGAGCAGCAAGGGAGGAGTATCACTGTTCCAGGTCTGGATCTTCACCTCCCTTCTTTGATCTTGAAGTTCCTGCCATCATGCCCACGGTGAAGGAGCTATGCGGCTTAGACAACGTGGAGAAGTATTTGGAGAGTATCTGCTCGAAATAAACAGCCAAGTTGGCAATCTTACCAGACGGCATATGTCTTCTTTTTTTAGTCCTTTAGCAAAGTTTTTTTTAGTCCTTTAGCAATGGAGATAACACTGCCAGTTTTTTTTTCTCACCAAAAAAAAAAAGGAGGTACTCAATAGTGAACATGAGCATAATGTATATTAATAGTGGTGAACATGAGCAAAGAAAATAGTATTTACTTAATTTAATAGTGGTGAACATAAGCAGGCGTTGCATAATGTATATTGAGCGTATAAAGAGGGATT]
consensusID : consensus_617#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence
[GAAATTCGAATATCTTTGCTATATCAAATTACAAACCTAGATCTACAATTGTTATGCATTCAACCAATTAACAGTACTCATAATTTTTACACTGCCCACTACCAACGTAGATACTCTCTTTTTCTCCAGTATACTTGGTAATTCTAGGTCTTGATTTCAAGTCTGTTTGGTGTTAGCTTCTGGGGCACAGTTAATAGTCACCCTTTTGTTCTCCCAACTTTCTGTGTCACTAACGCTTCCTGGTTGCAGCTTCTGGGGAGCCACCTTTGCTACTTGCTGCCTCGGTGCATTGTGCAACAAGGGAAGCAATTAGAGCAGCAAGGGAGGAGTATCACTGTTCCAGGTCTGGATCTTCACCTCCCTTCTTTGATCTTGAAGTTCCTGCCATCATGCCCACGGTGAAGGAGCTATGCGGCTTAGACAACGTGGAGAAGTATTTGGAGAGTATCTGCTCGAAATAAACAGCCAAGTTGGCAATCTTACCAGACGGCATATGTCTTCTT]
[+] EMBL CA766368 [GAAATTCGAATATCTTTGCTATATCAAATTACAAACCTAGATCTACAATTGTTATGCATTCAACCAATTAACAGTACTCATAATTTTTACACTGCCCACTACCAACGTAGATACTCTCTTTTTCTCCAGTATACTTGGTAATTCTAGGTCTTGATTTCAAGTCTGTTTGGTGTTAGCTTCTGGGGCACAGTTAATAGTCACCCTTTTGTTCTCCCAACTTTCTGTGTCACTAACGCTTCCTGGTTGCAGCTTCTGGGGAGCCACCTTTGCTACTTGCTGCCTCGGTGCATTGTGCAACAAGGGAAGCAATTAGAGCAGCAAGGGAGGAGTATCACTGTTCCAGGTCTGGATCTTCACCTCCCTTCTTTGATCTTGAAGTTCCTGCCATCATGCCCACGGTGAAGGAGCTATGCGGCTTAGACAACGTGGAGAAGTATTTGGAGAGTATCTGCTCGAAATAAACAGCCAAGTTGGCAATCTTACCAGACGGCATATGTCTTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_617#0 GGTAATGATCGCATACTTGAATCATCCAAACAGGTCATCGAGATCAGTGAAGACTATCTC 60
consensus_617#1 ------------------------------------------------------------
consensus_617#0 CCGGTTGGCTTACCAGCCAAGAAAGTTGGAGCAGAACTACAAGCCTCTGGTTGCAGAGAC 120
consensus_617#1 ------------------------------------------------------------
consensus_617#0 ACAAAAAACTGCCAATATAGCTGCCAGTCGAGCATTGGTCGACTACAGCATGGAAAATTT 180
consensus_617#1 ------------------------------------------------------------
consensus_617#0 AGATGCTCCAATTTTATCAATTGAGGAGGCTGTGAGAAGTAGTAGTTATTTTGAAATCCT 240
consensus_617#1 ------------------------------------------------------------
consensus_617#0 ACCATTTCTTCTTCCCCAAAAGATTGGTGATTTCTCAAAAGGAATGGAAGAAGCTGACCA 300
consensus_617#1 ------------------------------------------------------------
consensus_617#0 GAAAATATATTCAACTGAGGTGAACCTTCACTCGCAGTATTACTTTTACATGGAAACACA 360
consensus_617#1 ------------------------------------------------------------
consensus_617#0 AACTGCGCTAGCCATACCTGAGGAGGATAACTGTATGGTCGTGTATAGCTCAAGCCAGTG 420
consensus_617#1 ------------------------------------------------------------
consensus_617#0 CCCGGAGGTAGCACAAGAAACCATTGCAAAATGCCTGGGTTTACCTTGTCATAATGTCCG 480
consensus_617#1 ------------------------------------------------------------
consensus_617#0 TGTTATTACTAGAAGAGTTGGTGGTGGCTTTGGAGGCAAAGCTGTCAGATCGTTACCAGT 540
consensus_617#1 ------------------------------------------------------------
consensus_617#0 GGCAACAGCTTGTGCACTTTCAGCATTTAAGTTGCAGCGTCCTGTCCGAATATATCTTGA 600
consensus_617#1 ------------------------------------------------------------
consensus_617#0 TCGCAAGACTGACATGATAATGACTGGGGGCCGGCATCCCATGAAAATACGCTATTCTGT 660
consensus_617#1 ------------------------------------------------------------
consensus_617#0 AGGCTTCAAATCCGATGGGAACATCACAGCGCTACATATAGAATTGTTGGTAAATGCCGG 720
consensus_617#1 ------------------------------------------------------------
consensus_617#0 AATAACCCAGGATGTTAGTCCAGTGATTCCTCACAATTTCATAGAGGCTCTGAAGAAATA 780
consensus_617#1 ------------------------------------------------------------
consensus_617#0 TAATTGGGGTGCCTTCTCCTATGATGCAAGAATCTGCAAAACAAACATTGCAACCAGATC 840
consensus_617#1 ------------------------------------------------------------
consensus_617#0 CGCAATGCGGGGTCCTGGAGAAGTGCAGGGTTCTTATGTTGCTGAAGCTATTATTGAGCA 900
consensus_617#1 ------------------------------------------------------------
consensus_617#0 TGTTGCTGCTGTGCTCTCTACTGATGTTAATTTGGTCAGGCAGAGAAATCTTCACACAGT 960
consensus_617#1 ------------------------------------------------------------
consensus_617#0 GGAGAGCCTCAGTTTGTATCATAGTGAATGCATGGAAGATGCCTTGGGGTATACACTTCC 1020
consensus_617#1 ------------------------------------------------------------
consensus_617#0 CTCTATCTGCAATCAGTTGATTACATCAGCAAATTACCAGCACCAACTTGAAATGATTCG 1080
consensus_617#1 ------------------------------------------------------------
consensus_617#0 GTCCTTCAACAAAAGCAACAGATGGAAAAAGCGGGGGCTTTCTGTCGTGCCGATAGTGCA 1140
consensus_617#1 ------------------------------------------------------------
consensus_617#0 TAAATTCGCATCTCGGCCAACGCCTGGTAAAGTGTCTATTCTTAATGATGGATCCGTTGC 1200
consensus_617#1 ------------------------------------------------------------
consensus_617#0 TGTTGAAGTTGGAGGCATTGAACTTGGCCAAGGGCTTTGGACAAAAGTGAAGCAGATGGC 1260
consensus_617#1 ------------------------------------------------------------
consensus_617#0 AGCGTTCGGTCTTGGACAGCTTTGGACTGATAGAAGGCAAGAACTGTTGGAGAGAGTGAG 1320
consensus_617#1 ------------------------------------------------------------
consensus_617#0 AATTATTCAAGCAGATACACTAAGTGTGATACAGGGAGGGTGGACCACAGGGAGTACAAC 1380
consensus_617#1 ------------------------------------------------------------
consensus_617#0 ATCAGAATCTAGCTGCGAGGCAGTTCATCGTGCCTGCAATATCTTGGTCGACAGGCTGAA 1440
consensus_617#1 ------------------------------------------------------------
consensus_617#0 ACCACTCAAGGAGCAATTGCAAGAAAAACAAGGAACAGTTTCATGGGATGAGCTTATTTC 1500
consensus_617#1 ------------------------------------------------------------
consensus_617#0 ACAGGCAAAAATGGTAGGTGTGGACTTATCAGCTAAAGAACTCTACGTTCCCGGGGCTTC 1560
consensus_617#1 ------------------------------------------------------------
consensus_617#0 TGGTTCCTATCTAAACTATGGGGCAGCTGCTAGTGAGGTAGAGATTGATCTTCTGACAGG 1620
consensus_617#1 ------------------------------------------------------------
consensus_617#0 AGCGACCACAATTTTGCGTAGTGATCTTATATATGATTGTGGACGGAGTTTAAATCCTGC 1680
consensus_617#1 ------------------------------------------------------------
consensus_617#0 TGTTGACTTGGGGCAGGTGAGCATTTTATGGGTTTTGTACCAGTTTCTTGTTTCTTCACC 1740
consensus_617#1 ------------------------------------------------------------
consensus_617#0 TTCAAAAGGTTCGTCAGTTTCTTCCGTACAGAACCTAAAATTCCGTTTTCCATTTGTTCT 1800
consensus_617#1 ------------------------------------------------------------
consensus_617#0 ATTAATAAATTGACAAGTCAGAAATTGATGTCAGGTTTACAGCCTTCTAGTCAGTAGCAG 1860
consensus_617#1 ------------------------------------------------------------
consensus_617#0 GTTGTGCCAATTTTTTCTAATATTAAATGGTTCATGTGTCATCTTCTTTTAGTTTTACTG 1920
consensus_617#1 ------------------GAAATTCGAATATCTTTGCTATATCAAATTACAAACCTA--G 40
* *** * * ** *** ** * ** *
consensus_617#0 GCACGCTATACTTATATATTAACATATTTGATCCTTTGCTCTCTTCTTTTTCAGGTTGAA 1980
consensus_617#1 ATCTACAATTGTTATGCATTCAACCAATTAAC----AGTACTCATAATTTTTACACTG-- 94
* ** **** *** * * ** * * *** * **** * **
consensus_617#0 GGGGCTTTTGTCCAGGGAATTGGTTATTTCATGAACGAGGAGTACGTGACGAACTCAGAT 2040
consensus_617#1 ---CCCACTACCAACGTAGATACTCTCTTTTTCTCC--AGTATACTTGGTAATTCTAGGT 149
* * * * * * * * ** * * * *** ** * ** *
consensus_617#0 GGGCTGCTTGTCTCAGACGGGACTTGGACATACAAGATTCCTACGGTGGACACCATCCCA 2100
consensus_617#1 ------CTTGATTTCAAGTCTGTTTGG---TGTTAGCTTCTG-----GGGCACAGTT--- 192
**** * * **** * ** *** ** *** *
consensus_617#0 AAACAGTTCAACGTTAAGCTACTCAACAGTGGATTCCACAAGAAACGTGTGCTCTCTTCA 2160
consensus_617#1 -AATAGTCACCCTTTTGTTCTCCCAACTTTCTGTGTCAC---TAACGCTTCCTGGTTGCA 248
** *** * ** * **** * * *** **** * ** * **
consensus_617#0 AAAGCTTCTGGGGAGCCACCTTTGCTACTTGCTGCCTCGGTGCATTGTGCAACAAGGGAA 2220
consensus_617#1 ---GCTTCTGGGGAGCCACCTTTGCTACTTGCTGCCTCGGTGCATTGTGCAACAAGGGAA 305
*********************************************************
consensus_617#0 GCAATTAGAGCAGCAAGGGAGGAGTATCACTGTTCCAGGTCTGGATCTTCACCTCCCTTC 2280
consensus_617#1 GCAATTAGAGCAGCAAGGGAGGAGTATCACTGTTCCAGGTCTGGATCTTCACCTCCCTTC 365
************************************************************
consensus_617#0 TTTGATCTTGAAGTTCCTGCCATCATGCCCACGGTGAAGGAGCTATGCGGCTTAGACAAC 2340
consensus_617#1 TTTGATCTTGAAGTTCCTGCCATCATGCCCACGGTGAAGGAGCTATGCGGCTTAGACAAC 425
************************************************************
consensus_617#0 GTGGAGAAGTATTTGGAGAGTATCTGCTCGAAATAAACAGCCAAGTTGGCAATCTTACCA 2400
consensus_617#1 GTGGAGAAGTATTTGGAGAGTATCTGCTCGAAATAAACAGCCAAGTTGGCAATCTTACCA 485
************************************************************
consensus_617#0 GACGGCATATGTCTTCTTTTTTTAGTCCTTTAGCAAAGTTTTTTTTAGTCCTTTAGCAAT 2460
consensus_617#1 GACGGCATATGTCTTCTT------------------------------------------ 503
******************
consensus_617#0 GGAGATAACACTGCCAGTTTTTTTTTCTCACCAAAAAAAAAAAGGAGGTACTCAATAGTG 2520
consensus_617#1 ------------------------------------------------------------
consensus_617#0 AACATGAGCATAATGTATATTAATAGTGGTGAACATGAGCAAAGAAAATAGTATTTACTT 2580
consensus_617#1 ------------------------------------------------------------
consensus_617#0 AATTTAATAGTGGTGAACATAAGCAGGCGTTGCATAATGTATATTGAGCGTATAAAGAGG 2640
consensus_617#1 ------------------------------------------------------------
consensus_617#0 GATT 2644
consensus_617#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||