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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2246 fasta sequence
[CTGGCACAGCTAATCCAAATCCTCCTCTTTTTCTTGTTTTTTTTTTTCTTTCTTCGTCTTCTCCAACGCCCAAAGTAAAACAAAGGAAAAAAGAAAAGCCGCATCCAAGAACGCACCAGAAATTTCGGCGACGGTTGCGCGCGAATCCATCCATCCACCGGCGGTCGGAGGGCGGCGGCGGCGGAGCAATTCCGCCCAACCAAGCGGCGGAGTCGGTGCGGGCGAAATTTCCGGGTTGGTGCGCGGGGCTTGGGTTGGTGGTGGTGGACTGGTGGTGGTGTGTGTTCTTGGGAGTGGATCTGGCAGGAGGCTGGCGATGGGGAGGCGGGAGTAGGGGGAGCGGCGGATTGGAGTGGGAGGCGCGGTGTTGGGGGCTCCCATGGGCGGATGCTTCTCGCTGGAGGAGCACCGGCTCCAGGGCAAGACAGAAGCTGGTGGGCCAGATGGGTTAAGGAAATGCAAATCTGATTCTAAAGCTACAGCAAGTGTCCTTGCCCCTCCAAAAGATGTGGAGGACCTGCAAATCGAAGGATACGGAAATGTTAATATTTTCACATATAATGAACTAAGAGCAGCCACAAAAAACTTCCGGCCTGACCAAATTCTTGGAGAGGGTGGGTTTGGTGTTGTTTACAAAGGTGTAATTGATGAAAATGTTAGAGCGGGCTTTCCATCCACACAAGTTGCTGTGAAAGAATTAAACCCAGAGGGATTTCAGGGTGACAAGGAATGGTTGGCAGAAGTCAACTACCTTGGGCAACTTAGCCATCCAAATCTAGTCGAACTGATTGGGTATTGCTGTGAAGGCTCTCATAGACTGCTTGTTTACGAGTACATGGCTTGCGGCAGCCTTGAAAAGCATCTTTTTCGCCGGGTTTGCCTTAATATGCCATGGTCTACTCGAATGAAGATTGCTCTAGGTGCTGCAAGGGGGCTGGAATATCTTCACGGAGCTGAGAGATCAATTATATATCGAGATTTCAAAACATCAAACATCTTGTTAGATGCGGATTATAATGCCAAGCTGTCAGACTTTGGCCTAGCACGAACTGGACCTAGTGGAGACCAAACCCATGTATCAACTCGGGTCATGGGTACTTATGGCTATGCAGCTCCTGAATATGTCATGACAGGCCATCTGACAGCACGAAGTGGTGTCTATGGCTTTGGTGTCGTCCTTCTCGAGATGATCATAGGCAGGAGGGCTGTGGACAAGAGCCGGCCTAGCCGTGAGCACAACCTAGTTGAGTGGGCACGTCCCCTCCTCGTGCACAATCGGAAGCTGTTCAGGATTATCGATCCAAGAATGGAAGGGCAGTACTCCACCAAGGCTGCCATTGAGGTGGCAGGCCTTGCGTACCGATGCTTGAGCCAGAATCCCAAAGGACGACCCACCATGAGCCAGGTTGTTGAGACCTTTGAGGCTGTGCAAAACATGCCTGAATG-CCAAGACATACTC-TTGCAGAACTGCATGACGGGTGCAGTGACACTCTACGAGGTTG-CAAAGGACCCTACGGAGAGCGTCGAGCCGGAGAAGATAAAACAAGAACAACCAGCAGCAAAAACGGTCACCGTGGCACCGGCACCGGTAAATGGAAAACCCGTGCCTCAGAGCAGGAGAACACGGCCAGGGAATGGCCGGAGCAAGAGCGAGCCGTCTTTGGAATGCAAGCTGTACATCCCATCTCCAGACTCTGATGGCCAGCAGCCAGGCCTGGAGGCATTGTCATCCCCTTCCAGAGATGGAAGCATAAAGGATCCACCGGACGAGGATTTGTACAAGATATAAAAGTCACACAGAAGTTTTTTATGACGATTCAAGTTTTCGCTACCGGCGATTTCGCATTGCCATCCATCCATCTTGTTGTCAAGATCGATCAGAGTCAAAGTTGGTGTTAAAATTTTTTCTGATGGCGGAAGAACTCTACCTCGTTAGGTTTCTTGCTGTTCCGACTAGCAATTGTATGTAGAGAGGAGCGTTGTGGAAAGCATTTGTAATGTGAGATGCCTGCCGCGACGAAAAGTTCGTGTTGTAAACTTGAAACCATTCTCTGGGAAGAGGAAGATCCACATCATAATCGATGTGTCAGTGTTGTTGTTGCTCGAGTGTTTTTGACTTTTCTGTATAGATGATGATGTCCTTGCAAACTTGGTACAGTTCTACAGGAAATCAACAAGAAGATGGAAAAATATAAGATGAATCAGTGTCCGTTTGTTGACAGTTTGTTTTTGGAGTATGGTTTTGT]
[+] EMBL AK100479 [CTGGCACAGCTAATCCAAATCCTCCTCTTTTTCTTGTTTTTTTTTTTCTTTCTTCGTCTTCTCCAACGCCCAAAGTAAAACAAAGGAAAAAAGAAAAGCCGCATCCAAGAACGCACCAGAAATTTCGGCGACGGTTGCGCGCGAATCCATCCATCCACCGGCGGTCGGAGGGCGGCGGCGGCGGAGCAATTCCGCCCAACCAAGCGGCGGAGTCGGTGCGGGCGAAATTTCCGGGTTGGTGCGCGGGGCTTGGGTTGGTGGTGGTGGACTGGTGGTGGTGTGTGTTCTTGGGAGTGGATCTGGCAGGAGGCTGGCGATGGGGAGGCGGGAGTAGGGGGAGCGGCGGATTGGAGTGGGAGGCGCGGTGTTGGGGGCTCCCATGGGCGGATGCTTCTCGCTGGAGGAGCACCGGCTCCAGGGCAAGACAGAAGCTGGTGGGCCAGATGGGTTAAGGAAATGCAAATCTGATTCTAAAGCTACAGCAAGTGTCCTTGCCCCTCCAAAAGATGTGGAGGACCTGCAAATCGAAGGATACGGAAATGTTAATATTTTCACATATAATGAACTAAGAGCAGCCACAAAAAACTTCCGGCCTGACCAAATTCTTGGAGAGGGTGGGTTTGGTGTTGTTTACAAAGGTGTAATTGATGAAAATGTTAGAGCGGGCTTTCCATCCACACAAGTTGCTGTGAAAGAATTAAACCCAGAGGGATTTCAGGGTGACAAGGAATGGTTGGCAGAAGTCAACTACCTTGGGCAACTTAGCCATCCAAATCTAGTCGAACTGATTGGGTATTGCTGTGAAGGCTCTCATAGACTGCTTGTTTACGAGTACATGGCTTGCGGCAGCCTTGAAAAGCATCTTTTTCGCCGGGTTTGCCTTAATATGCCATGGTCTACTCGAATGAAGATTGCTCTAGGTGCTGCAAGGGGGCTGGAATATCTTCACGGAGCTGAGAGATCAATTATATATCGAGATTTCAAAACATCAAACATCTTGTTAGATGCGGATTATAATGCCAAGCTGTCAGACTTTGGCCTAGCACGAACTGGACCTAGTGGAGACCAAACCCATGTATCAACTCGGGTCATGGGTACTTATGGCTATGCAGCTCCTGAATATGTCATGACAGGCCATCTGACAGCACGAAGTGGTGTCTATGGCTTTGGTGTCGTCCTTCTCGAGATGATCATAGGCAGGAGGGCTGTGGACAAGAGCCGGCCTAGCCGTGAGCACAACCTAGTTGAGTGGGCACGTCCCCTCCTCGTGCACAATCGGAAGCTGTTCAGGATTATCGATCCAAGAATGGAAGGGCAGTACTCCACCAAGGCTGCCATTGAGGTGGCAGGCCTTGCGTACCGATGCTTGAGCCAGAATCCCAAAGGACGACCCACCATGAGCCAGGTTGTTGAGACCTTTGAGGCTGTGCAAAACATGCCTGAATG CCAAGACATACTC TTGCAGAACTGCATGACGGGTGCAGTGACACTCTACGAGGTTG CAAAGGACCCTACGGAGAGCGTCGAGCCGGAGAAGATAAAACAAGAACAACCAGCAGCAAAAACGGTCACCGTGGCACCGGCACCGGTAAATGGAAAACCCGTGCCTCAGAGCAGGAGAACACGGCCAGGGAATGGCCGGAGCAAGAGCGAGCCGTCTTTGGAATGCAAGCTGTACATCCCATCTCCAGACTCTGATGGCCAGCAGCCAGGCCTGGAGGCATTGTCATCCCCTTCCAGAGATGGAAGCATAAAGGATCCACCGGACGAGGATTTGTACAAGATATAAAAGTCACACAGAAGTTTTTTATGACGATTCAAGTTTTCGCTACCGGCGATTTCGCATTGCCATCCATCCATCTTGTTGTCAAGATCGATCAGAGTCAAAGTTGGTGTTAAAATTTTTTCTGATGGCGGAAGAACTCTACCTCGTTAGGTTTCTTGCTGTTCCGACTAGCAATTGTATGTAGAGAGGAGCGTTGTGGAAAGCATTTGTAATGTGAGATGCCTGCCGCGACGAAAAGTTCGTGTTGTAAACTTGAAACCATTCTCTGGGAAGAGGAAGATCCACATCATAATCGATGTGTCAGTGTTGTTGTTGCTCGAGTGTTTTTGACTTTTCTGTATAGATGATGATGTCCTTGCAAACTTGGTACAGTTCTACAGGAAATCAACAAGAAGATGGAAAAATATAAGATGAATCAGTGTCCGTTTGTTGACAGTTTGTTTTTGGAGTATGGTTTTGT]
[+] EMBL AU085863 [ AATCCTCCTCTTTTTCTTG TTTTTTTTTTCTTTCTTCGTCTTCTCCAACGCCCAAAGTAAAACAAAGGAAAAAAGAAAAGCCGCATCCAAGAACGCACCAGAAATTTCGGCGACGGTTGCGCGCGAATCCATCCATCCACCGGCGGTCGGAGGGCGGCGGCGGCGGAGCAATTCCGCCCAACCAAGCGGCGGAGTCGGTGCGGGCGAAATTTCCGGGTTGGTGCGCGGGGCTTGGGTTGGTGGTGGTGGACTGGTGGTGGTGTGTGTTCTTGGGAGTGGATCTGGCAGGAGGCTGGCGATGGGGAGGCGGGAGTAGGGGGAGCGGCGGATTGGAGTNGGAAGCGCGGTGTTGGGGGCTCCCATGGGCGGATGCTTCTCGCTGGAGGA ]
[+] EMBL C98701 [ CATGCTTGAATGCCCAAGACATACTCTTTGCAGAACTGCATGACGGTTGCAGTGACACTCTACGAGGTTGCCAAAGGACCCTACGGAGAGCGTCGAGCCGGAGAAGATAAANCAAGAACAACCAGCAGCAAAAACGGTCACCGTGGCACCGGCACCGGTAAATGGAAAACCCGTGCCTCAGAGCAGGAGAACACGGCCAGGGAATGGCCGGAGCAAGAGCGAGCCGTCTTTGGAATGCAAGCTGTACATCCCATCTCCAGACTCTGATGGCCAGCAGCCAGGCCTGGAGGCATTGTCATCCCCTTCCAGAGATGGAAGCATAAAGGATCCACCGGACGAGGATTTGTACAAGATATAAAAGTCACACAGAAGTTTTTTATGACGATTCAAGTTTTCGCTACCGGCGATTTCGCATTGCCATCCATCCATCTTGTTGTCAAGATCGATCAGAGTCAAAGTTGGTGTTAAAATTTTTTCTGATGGCGGAAGAACTCTACCTCGTTAGGTTTCTTGCTGTTCCGACTAGCAATTGTATGTAGAGAGGAGCGTTGTGGAAAGCATTTGTAATGTGAGATGCCTGCCGCGACGAAAAGTTCGTGTTGTAAACTTGAAACCATTCTCTGGGAAGAGGAAGATCCACATCATAAaaa ]
consensusID : consensus_6170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence
[CTATGCAGCTCCTGAATATGTCATGACAGGCCATCTGACAGCACGAAGTGATGTCTATGGCTTTGGTGTCGTCCTTCTCGAGATGATCATAGGCAGGAGGGCTGTGGACAAGAGCCGGCCTAGCCGTGAGCACAACCTAGTTGAGTGGGCACGTCCCCTCCTCGTGCACAATCGGAAGCTGTTCAGGATTATCGATCCAAGAATGGAAGGGCAGTACTCCACCAAGGCTGCCATTGAGGTGGCAGGCCTTGCGTACCGATGCTTGAGCCAGAATCCCAAAGGACGACCCACCATGAGCCAGGTTGTTGAGACCTTTGAGGCTGTGCAAAACATGCCTGAATGCCAAGACATACTCTTGCAGAACTGCATGACGGGTGCAGTGACACTCTACGAGGTTGCAAAGGACCCTACGGAGAGCGTCGAGCCGGAGAAGATAAAACAAGAACANNNNNGCAGCAAAACGNTNNNCGTGGCNNNNNNNNCNGT]
[+] EMBL CF196424 [CTATGCAGCTCCTGAATATGTCATGACAGGCCATCTGACAGCACGAAGTGATGTCTATGGCTTTGGTGTCGTCCTTCTCGAGATGATCATAGGCAGGAGGGCTGTGGACAAGAGCCGGCCTAGCCGTGAGCACAACCTAGTTGAGTGGGCACGTCCCCTCCTCGTGCACAATCGGAAGCTGTTCAGGATTATCGATCCAAGAATGGAAGGGCAGTACTCCACCAAGGCTGCCATTGAGGTGGCAGGCCTTGCGTACCGATGCTTGAGCCAGAATCCCAAAGGACGACCCACCATGAGCCAGGTTGTTGAGACCTTTGAGGCTGTGCAAAACATGCCTGAATGCCAAGACATACTCTTGCAGAACTGCATGACGGGTGCAGTGACACTCTACGAGGTTGCAAAGGACCCTACGGAGAGCGTCGAGCCGGAGAAGATAAAACAAGAACANNNNNGCAGCAAAACGNTNNNCGTGGCNNNNNNNNCNGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6170#0 CTGGCACAGCTAATCCAAATCCTCCTCTTTTTCTTGTTTTTTTTTTTCTTTCTTCGTCTT 60
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 CTCCAACGCCCAAAGTAAAACAAAGGAAAAAAGAAAAGCCGCATCCAAGAACGCACCAGA 120
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 AATTTCGGCGACGGTTGCGCGCGAATCCATCCATCCACCGGCGGTCGGAGGGCGGCGGCG 180
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 GCGGAGCAATTCCGCCCAACCAAGCGGCGGAGTCGGTGCGGGCGAAATTTCCGGGTTGGT 240
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 GCGCGGGGCTTGGGTTGGTGGTGGTGGACTGGTGGTGGTGTGTGTTCTTGGGAGTGGATC 300
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 TGGCAGGAGGCTGGCGATGGGGAGGCGGGAGTAGGGGGAGCGGCGGATTGGAGTGGGAGG 360
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 CGCGGTGTTGGGGGCTCCCATGGGCGGATGCTTCTCGCTGGAGGAGCACCGGCTCCAGGG 420
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 CAAGACAGAAGCTGGTGGGCCAGATGGGTTAAGGAAATGCAAATCTGATTCTAAAGCTAC 480
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 AGCAAGTGTCCTTGCCCCTCCAAAAGATGTGGAGGACCTGCAAATCGAAGGATACGGAAA 540
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 TGTTAATATTTTCACATATAATGAACTAAGAGCAGCCACAAAAAACTTCCGGCCTGACCA 600
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 AATTCTTGGAGAGGGTGGGTTTGGTGTTGTTTACAAAGGTGTAATTGATGAAAATGTTAG 660
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 AGCGGGCTTTCCATCCACACAAGTTGCTGTGAAAGAATTAAACCCAGAGGGATTTCAGGG 720
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 TGACAAGGAATGGTTGGCAGAAGTCAACTACCTTGGGCAACTTAGCCATCCAAATCTAGT 780
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 CGAACTGATTGGGTATTGCTGTGAAGGCTCTCATAGACTGCTTGTTTACGAGTACATGGC 840
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 TTGCGGCAGCCTTGAAAAGCATCTTTTTCGCCGGGTTTGCCTTAATATGCCATGGTCTAC 900
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 TCGAATGAAGATTGCTCTAGGTGCTGCAAGGGGGCTGGAATATCTTCACGGAGCTGAGAG 960
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 ATCAATTATATATCGAGATTTCAAAACATCAAACATCTTGTTAGATGCGGATTATAATGC 1020
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 CAAGCTGTCAGACTTTGGCCTAGCACGAACTGGACCTAGTGGAGACCAAACCCATGTATC 1080
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 AACTCGGGTCATGGGTACTTATGGCTATGCAGCTCCTGAATATGTCATGACAGGCCATCT 1140
consensus_6170#1 ------------------------CTATGCAGCTCCTGAATATGTCATGACAGGCCATCT 36
************************************
consensus_6170#0 GACAGCACGAAGTGGTGTCTATGGCTTTGGTGTCGTCCTTCTCGAGATGATCATAGGCAG 1200
consensus_6170#1 GACAGCACGAAGTGATGTCTATGGCTTTGGTGTCGTCCTTCTCGAGATGATCATAGGCAG 96
************** *********************************************
consensus_6170#0 GAGGGCTGTGGACAAGAGCCGGCCTAGCCGTGAGCACAACCTAGTTGAGTGGGCACGTCC 1260
consensus_6170#1 GAGGGCTGTGGACAAGAGCCGGCCTAGCCGTGAGCACAACCTAGTTGAGTGGGCACGTCC 156
************************************************************
consensus_6170#0 CCTCCTCGTGCACAATCGGAAGCTGTTCAGGATTATCGATCCAAGAATGGAAGGGCAGTA 1320
consensus_6170#1 CCTCCTCGTGCACAATCGGAAGCTGTTCAGGATTATCGATCCAAGAATGGAAGGGCAGTA 216
************************************************************
consensus_6170#0 CTCCACCAAGGCTGCCATTGAGGTGGCAGGCCTTGCGTACCGATGCTTGAGCCAGAATCC 1380
consensus_6170#1 CTCCACCAAGGCTGCCATTGAGGTGGCAGGCCTTGCGTACCGATGCTTGAGCCAGAATCC 276
************************************************************
consensus_6170#0 CAAAGGACGACCCACCATGAGCCAGGTTGTTGAGACCTTTGAGGCTGTGCAAAACATGCC 1440
consensus_6170#1 CAAAGGACGACCCACCATGAGCCAGGTTGTTGAGACCTTTGAGGCTGTGCAAAACATGCC 336
************************************************************
consensus_6170#0 TGAATGCCAAGACATACTCTTGCAGAACTGCATGACGGGTGCAGTGACACTCTACGAGGT 1500
consensus_6170#1 TGAATGCCAAGACATACTCTTGCAGAACTGCATGACGGGTGCAGTGACACTCTACGAGGT 396
************************************************************
consensus_6170#0 TGCAAAGGACCCTACGGAGAGCGTCGAGCCGGAGAAGATAAAACAAGAACAACCAGCAGC 1560
consensus_6170#1 TGCAAAGGACCCTACGGAGAGCGTCGAGCCGGAGAAGATAAAACAAGAACANNNNNGCAG 456
***************************************************
consensus_6170#0 AAAAACGGTCACCGTGGCACCGGCACCGGTAAATGGAAAACCCGTGCCTCAGAGCAGGAG 1620
consensus_6170#1 CAAAACGNTNNNCGTGGCNNNNNNNNCNGT------------------------------ 486
****** * ****** * **
consensus_6170#0 AACACGGCCAGGGAATGGCCGGAGCAAGAGCGAGCCGTCTTTGGAATGCAAGCTGTACAT 1680
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 CCCATCTCCAGACTCTGATGGCCAGCAGCCAGGCCTGGAGGCATTGTCATCCCCTTCCAG 1740
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 AGATGGAAGCATAAAGGATCCACCGGACGAGGATTTGTACAAGATATAAAAGTCACACAG 1800
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 AAGTTTTTTATGACGATTCAAGTTTTCGCTACCGGCGATTTCGCATTGCCATCCATCCAT 1860
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 CTTGTTGTCAAGATCGATCAGAGTCAAAGTTGGTGTTAAAATTTTTTCTGATGGCGGAAG 1920
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 AACTCTACCTCGTTAGGTTTCTTGCTGTTCCGACTAGCAATTGTATGTAGAGAGGAGCGT 1980
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 TGTGGAAAGCATTTGTAATGTGAGATGCCTGCCGCGACGAAAAGTTCGTGTTGTAAACTT 2040
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 GAAACCATTCTCTGGGAAGAGGAAGATCCACATCATAATCGATGTGTCAGTGTTGTTGTT 2100
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 GCTCGAGTGTTTTTGACTTTTCTGTATAGATGATGATGTCCTTGCAAACTTGGTACAGTT 2160
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 CTACAGGAAATCAACAAGAAGATGGAAAAATATAAGATGAATCAGTGTCCGTTTGTTGAC 2220
consensus_6170#1 ------------------------------------------------------------
consensus_6170#0 AGTTTGTTTTTGGAGTATGGTTTTGT 2246
consensus_6170#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||