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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6175#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2096 fasta sequence
[AACTAGTAAACCCCCCTGTCCAACTGCTCCACCTCCCACTTCCACCAGTCCACCACCCTGCGGCATACGGCGCGTCACGAGCATCGGCGGCGGAAGCGTCGCCGTCGTTGTTGCCTTGCCTCGCGACGCCGCTCCCGTCCCTCTCACTCTCCCGTGGACCGTGCGCGCTCTAGCTCGTGCCTTCTTGCGGAGTTTGCAGTGCGCGCGTTTCGTTTGCCCGCAACAGCAAGGCGAGGGGGGAGAGAGCAAGGATGGCGAGGGCGGAGGCGGCGGCGGCGCTGGAGTTCACGCCGACGTGGATCGTCGCGGCGATCTGCTCCCTCATCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGCAAGACGCTCAAGAGAAAGAACCAGAAGGCGCTA-TTCGAGGCTCTCCTCAAGGTGAAAGAAGAGCTGATGCTTCTGGGGTTCATCTCCCTGCTGCTGACGGTGTCCCAAGGGATTCTTCAGAAGACATGCGTTCCTCCCAAGTGGACCAACTACTTGCTTCCATGTCGAAAGATGGAGGACCAGTCCAAACAACGCGGCCCGTCAGAAGCTCATTTCGTTGCTGCCGGAGTTCTTGGCCACCTCGGTCGGCGGCTGCTTGCCGATGGTGGAACAGGGGCCGACCATTGCCAGAACAAGGGAAAGGTTCCTTTGCTGTCACTTGAAGCACTCCATCAGTTGCATATTTTCATTTTTGTTCTGGCCATCACACATGTGATTTTCAGTGCTCTGACTATGCTTCTTGGAGGAGCGAAGATTCATCAATGGAAACACTGGGAAAATGACATCCAGAAAGATGTTGCTCAAAATGCGCCCAAGAAGGTGACCCATGTGCATCAATTTGAATTTATCAGGGAACGCTTTAAGGGTATTGGCAAAGATTCCATAATACTAAGCTGGCTGCATTCTTTTGTTAAGCAGTTTTCTGGGTCAGTTACTAAATCAGACTACATAACAATGCGACTTGGATTTATCCAGACACATTGCCGTGCGAACCCAAAGTTCGATTTCCACAGATACATGGTACGAGCTTTGGAAGCAGATTTTAAGAAAGTGGTTGGTATAAGCTGGTACTTGTGGATATTCGTTATGATATTCCTGCTGCTGAATGTTAATGGTTGGCACACATACTTTTGGATCTCCTTCGTTCCCCTTCTACTTTTGCTGGCCGTTGGCACCAAGCTAGAACATGTCATAACCCAACTAGCCCATGAGGTTGCCGAGAAGCACTCTGCAATTGAGGGCGACTTGGTTGTGAATCCATCAGACGAGCACTTTTGGTTTGGACGGCCGAAGGTGATCCTATACCTGATCCATTTTATCCTCTTCCAAAACGCGTTCGAGATCGCGTTCTTCTTCTGGATTCTGACCACCTACGGTTTCAACTCCTGCATCATGGACCACGTCCCTTTTATCCTGACAAGGCTTATCATCGGGGCCATCGTTCAAATCCTCTGCAGCTACAGTACCTTGCCTATATATGCAATTGTCACACAGATGGGCTCCTTTTTCAAGAAGGAGATCTTCGACGAGCATGTGCAGCAGGGCCTTGTTGGTTGGGCGCAGAAGGCCAAGAAGAGGAAAGGGTTGAAGGAGAGCAACGGCGCCATGGCTGGAGCTGGATCAACAAATGGGTCATCACAGCCATCTTCCATTCTACAAATGGTGAGGCGAGCCGCCGCTAGCGAGGAAGGCAGCAGCAATGGCGGTGACATGCGCACTAATCAGTAGTGGCCCGGAAGCAGTGTGTGTTTGTGACCTACTGACCGTCGAGAAATGCAGTGTTGCCGTGCACCCAGAAACTGCGATCAGCTGTGCTGTCAGCTATGTTTTGTTTGTTCTATTGTACTACTGTACTCTAGCAGACAGTAGTTTGCATGGCAATAGTCAAGAGGAGAGTTGTATGATACTACTACTAGTAGCTAGTAGAAGATGGCGATACAGTGTGATAGGATGCTTGCTACCTTTGATCGACACACATGTTGTCGAGTTTTAGAATTTACCTACCGAGAAGGTAGTGACTGGAGAAGCAGCTTGTAGTAAGCAGAACAGGCACAAAAAAACTGA]
[+] EMBL AK121374 [AACTAGTAAACCCCCCTGTCCAACTGCTCCACCTCCCACTTCCACCAGTCCACCACCCTGCGGCATACGGCGCGTCACGAGCATCGGCGGCGGAAGCGTCGCCGTCGTTGTTGCCTTGCCTCGCGACGCCGCTCCCGTCCCTCTCACTCTCCCGTGGACCGTGCGCGCTCTAGCTCGTGCCTTCTTGCGGAGTTTGCAGTGCGCGCGTTTCGTTTGCCCGCAACAGCAAGGCGAGGGGGGAGAGAGCAAGGATGGCGAGGGCGGAGGCGGCGGCGGCGCTGGAGTTCACGCCGACGTGGATCGTCGCGGCGATCTGCTCCCTCATCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGCAAGACGCTCAAGAGAAAGAACCAGAAGGCGCTA TTCGAGGCTCTCCTCAAGGTGAAAGAAGAGCTGATGCTTCTGGGGTTCATCTCCCTGCTGCTGACGGTGTCCCAAGGGATTCTTCAGAAGACATGCGTTCCTCCCAAGTGGACCAACTACTTGCTTCCATGTCGAAAGATGGAGGACCAGTCCAAACAACGCGGCCCGTCAGAAGCTCATTTCGTTGCTGCCGGAGTTCTTGGCCACCTCGGTCGGCGGCTGCTTGCCGATGGTGGAACAGGGGCCGACCATTGCCAGAACAAGGGAAAGGTTCCTTTGCTGTCACTTGAAGCACTCCATCAGTTGCATATTTTCATTTTTGTTCTGGCCATCACACATGTGATTTTCAGTGCTCTGACTATGCTTCTTGGAGGAGCGAAGATTCATCAATGGAAACACTGGGAAAATGACATCCAGAAAGATGTTGCTCAAAATGCGCCCAAGAAGGTGACCCATGTGCATCAATTTGAATTTATCAGGGAACGCTTTAAGGGTATTGGCAAAGATTCCATAATACTAAGCTGGCTGCATTCTTTTGTTAAGCAGTTTTCTGGGTCAGTTACTAAATCAGACTACATAACAATGCGACTTGGATTTATCCAGACACATTGCCGTGCGAACCCAAAGTTCGATTTCCACAGATACATGGTACGAGCTTTGGAAGCAGATTTTAAGAAAGTGGTTGGTATAAGCTGGTACTTGTGGATATTCGTTATGATATTCCTGCTGCTGAATGTTAATGGTTGGCACACATACTTTTGGATCTCCTTCGTTCCCCTTCTACTTTTGCTGGCCGTTGGCACCAAGCTAGAACATGTCATAACCCAACTAGCCCATGAGGTTGCCGAGAAGCACTCTGCAATTGAGGGCGACTTGGTTGTGAATCCATCAGACGAGCACTTTTGGTTTGGACGGCCGAAGGTGATCCTATACCTGATCCATTTTATCCTCTTCCAAAACGCGTTCGAGATCGCGTTCTTCTTCTGGATTCTGACCACCTACGGTTTCAACTCCTGCATCATGGACCACGTCCCTTTTATCCTGACAAGGCTTATCATCGGGGCCATCGTTCAAATCCTCTGCAGCTACAGTACCTTGCCTATATATGCAATTGTCACACAGATGGGCTCCTTTTTCAAGAAGGAGATCTTCGACGAGCATGTGCAGCAGGGCCTTGTTGGTTGGGCGCAGAAGGCCAAGAAGAGGAAAGGGTTGAAGGAGAGCAACGGCGCCATGGCTGGAGCTGGATCAACAAATGGGTCATCACAGCCATCTTCCATTCTACAAATGGTGAGGCGAGCCGCCGCTAGCGAGGAAGGCAGCAGCAATGGCGGTGACATGCGCACTAATCAGTAGTGGCCCGGAAGCAGTGTGTGTTTGTGACCTACTGACCGTCGAGAAATGCAGTGTTGCCGTGCACCCAGAAACTGCGATCAGCTGTGCTGTCAGCTATGTTTTGTTTGTTCTATTGTACTACTGTACTCTAGCAGACAGTAGTTTGCATGGCAATAGTCAAGAGGAGAGTTGTATGATACTACTACTAGTAGCTAGTAGAAGATGGCGATACAGTGTGATAGGATGCTTGCTACCTTTGATCGACACACATGTTGTCGAGTTTTAGAATTTACCTACCGAGAAGGTAGTGACTGGAGAAGCAGCTTGTAGTAAGCAGAACAGGCACAAAAAAACTGA]
[+] EMBL AU163639 [ CACCCTGCGGCATACGGCGCGTCACGAGCATCGGCGGCGGAANCGTCGCCGTCGTTGTTGCCTTGCCTCGCGACGCCGCTCCCGTCCCTCTCACTCTCCCGTGGACCGTGCGCGCTCTAGCTCGTGCCTTCTTGCGGAGTTTGCAGTGCGCGCGTTTCGTTTGCCCGCAACAGCAAGGCGAGGGGGGAGAGAGCAAGGATGGCGAGGGCGGAGGCGGCGGCGGCGCTGGAGTTCACGCCGACGTGGATCGTCGCGGCGATCTGCTCCCTCATCGTGCTCATCTCCCTCGCCGCCGAGA GTGCCTCCATTACCTCGGCAAGACG TCAAGAGAAAGAACCAGAANGCG TATTTCGA GNTCTCCTCAAGGTtg ]
[+] EMBL AK072733 [ CCCATGTGCATCAATTTGAATTTATCAGGGAACGCTTTAAGGGTATTGGCAAAGATTCCATAATACTAAGCTGGCTGCATTCTTTTGTTAAGCAGTTTTCTGGGTCAGTTACTAAATCAGACTACATAACAATGCGACTTGGATTTATCCAGACACATTGCCGTGCGAACCCAAAGTTCGATTTCCACAGATACATGGTACGAGCTTTGGAAGCAGATTTTAAGAAAGTGGTTGGTATAAGCTGGTACTTGTGGATATTCGTTATGATATTCCTGCTGCTGAATGTTAATGGTTGGCACACATACTTTTGGATCTCCTTCGTTCCCCTTCTACTTTTGCTGGCCGTTGGCACCAAGCTAGAACATGTCATAACCCAACTAGCCCATGAGGTTGCCGAGAAGCACTCTGCAATTGAGGGCGACTTGGTTGTGAATCCATCAGACGAGCACTTTTGGTTTGGACGGCCGAAGGTGATCCTATACCTGATCCATTTTATCCTCTTCCAAAACGCGTTCGAGATCGCGTTCTTCTTCTGGATTCTGACCACCTACGGTTTCAACTCCTGCATCATGGACCACGTCCCTTTTATCCTGACAAGGCTTATCATCGGGGCCATCGTTCAAATCCTCTGCAGCTACAGTACCTTGCCTATATATGCAATTGTCACACAGATGGGCTCCTTTTTCAAGAAGGAGATCTTCGACGAGCATGTGCAGCAGGGCCTTGTTGGTTGGGCGCAGAAGGCCAAGAAGAGGAAAGGGTTGAAGGAGAGCAACGGCGCCATGGCTGGAGCTGGATCAACAAATGGGTCATCACAGCCATCTTCCATTCTACAAATGGTGAGGCGAGCCGCCGCTAGCGAGGAAGGCAGCAGCAATGGCGGTGACATGCGCACTAATCAGTAGTGGCCCGGAAGCAGTGTGTGTTTGTGACCTACTGACCGTCGAGAAATGCAGTGTTGCCGTGCACCCAGAAACTGCGATCAGCTGTGCTGTCAGCTATGTTTTGTTTGTTCTATTGTACTACTGTACTCTAGCAGACAGTAGTTTGCATGGCAATAGTCAAGAGGA ]
consensusID : consensus_6175#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence
[CCCCATGCCGTTANATCCCCCTTATCCNTTATGCCCCGGAACCNTTGTGTTGTGGCCCTACTTGNCCGTCGAAGAATGCCNTGTCCCCGTGCACCCCNGAACTGCGATCANCTGTGCTGTCAGCTATGTTTTGTTTGTTCTATTGTACTACTGTACTCTAGCAGACAGTAGTTTGCATGGCAATAGTCAAGAGGAGAGTTGTATGATACTACTACTAGTAGCTAGTAGAAGATGGCGATACAGTGTGATAGGATGCTTGCTACCTTTGATCGACACACATGTTGTCGAGTTTCAGAATTTACCTACCGAGAAGGTAGTGACTGGAGAAGCAGCTTGTAGTAAGCAGAACAGGCACAAAAAAACTGAACTTTGCTTCAAAAA]
[+] EMBL C98942 [CCCCATGCCGTTANATCCCCCTTATCCNTTATGCCCCGGAACCNTTGTGTTGTGGCCCTACTTGNCCGTCGAAGAATGCCNTGTCCCCGTGCACCCCNGAACTGCGATCANCTGTGCTGTCAGCTATGTTTTGTTTGTTCTATTGTACTACTGTACTCTAGCAGACAGTAGTTTGCATGGCAATAGTCAAGAGGAGAGTTGTATGATACTACTACTAGTAGCTAGTAGAAGATGGCGATACAGTGTGATAGGATGCTTGCTACCTTTGATCGACACACATGTTGTCGAGTTTCAGAATTTACCTACCGAGAAGGTAGTGACTGGAGAAGCAGCTTGTAGTAAGCAGAACAGGCACAAAAAAACTGAACTTTGCTTCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6175#0 AACTAGTAAACCCCCCTGTCCAACTGCTCCACCTCCCACTTCCACCAGTCCACCACCCTG 60
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 CGGCATACGGCGCGTCACGAGCATCGGCGGCGGAAGCGTCGCCGTCGTTGTTGCCTTGCC 120
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 TCGCGACGCCGCTCCCGTCCCTCTCACTCTCCCGTGGACCGTGCGCGCTCTAGCTCGTGC 180
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 CTTCTTGCGGAGTTTGCAGTGCGCGCGTTTCGTTTGCCCGCAACAGCAAGGCGAGGGGGG 240
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 AGAGAGCAAGGATGGCGAGGGCGGAGGCGGCGGCGGCGCTGGAGTTCACGCCGACGTGGA 300
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 TCGTCGCGGCGATCTGCTCCCTCATCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCC 360
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 ATTACCTCGGCAAGACGCTCAAGAGAAAGAACCAGAAGGCGCTATTCGAGGCTCTCCTCA 420
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 AGGTGAAAGAAGAGCTGATGCTTCTGGGGTTCATCTCCCTGCTGCTGACGGTGTCCCAAG 480
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 GGATTCTTCAGAAGACATGCGTTCCTCCCAAGTGGACCAACTACTTGCTTCCATGTCGAA 540
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 AGATGGAGGACCAGTCCAAACAACGCGGCCCGTCAGAAGCTCATTTCGTTGCTGCCGGAG 600
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 TTCTTGGCCACCTCGGTCGGCGGCTGCTTGCCGATGGTGGAACAGGGGCCGACCATTGCC 660
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 AGAACAAGGGAAAGGTTCCTTTGCTGTCACTTGAAGCACTCCATCAGTTGCATATTTTCA 720
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 TTTTTGTTCTGGCCATCACACATGTGATTTTCAGTGCTCTGACTATGCTTCTTGGAGGAG 780
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 CGAAGATTCATCAATGGAAACACTGGGAAAATGACATCCAGAAAGATGTTGCTCAAAATG 840
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 CGCCCAAGAAGGTGACCCATGTGCATCAATTTGAATTTATCAGGGAACGCTTTAAGGGTA 900
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 TTGGCAAAGATTCCATAATACTAAGCTGGCTGCATTCTTTTGTTAAGCAGTTTTCTGGGT 960
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 CAGTTACTAAATCAGACTACATAACAATGCGACTTGGATTTATCCAGACACATTGCCGTG 1020
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 CGAACCCAAAGTTCGATTTCCACAGATACATGGTACGAGCTTTGGAAGCAGATTTTAAGA 1080
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 AAGTGGTTGGTATAAGCTGGTACTTGTGGATATTCGTTATGATATTCCTGCTGCTGAATG 1140
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 TTAATGGTTGGCACACATACTTTTGGATCTCCTTCGTTCCCCTTCTACTTTTGCTGGCCG 1200
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 TTGGCACCAAGCTAGAACATGTCATAACCCAACTAGCCCATGAGGTTGCCGAGAAGCACT 1260
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 CTGCAATTGAGGGCGACTTGGTTGTGAATCCATCAGACGAGCACTTTTGGTTTGGACGGC 1320
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 CGAAGGTGATCCTATACCTGATCCATTTTATCCTCTTCCAAAACGCGTTCGAGATCGCGT 1380
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 TCTTCTTCTGGATTCTGACCACCTACGGTTTCAACTCCTGCATCATGGACCACGTCCCTT 1440
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 TTATCCTGACAAGGCTTATCATCGGGGCCATCGTTCAAATCCTCTGCAGCTACAGTACCT 1500
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 TGCCTATATATGCAATTGTCACACAGATGGGCTCCTTTTTCAAGAAGGAGATCTTCGACG 1560
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 AGCATGTGCAGCAGGGCCTTGTTGGTTGGGCGCAGAAGGCCAAGAAGAGGAAAGGGTTGA 1620
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 AGGAGAGCAACGGCGCCATGGCTGGAGCTGGATCAACAAATGGGTCATCACAGCCATCTT 1680
consensus_6175#1 ------------------------------------------------------------
consensus_6175#0 CCATTCTACAAATGGTGAGGCGAGCCGCCGCTAGCGAGGAAGGCAGCAGCAATGGCGGTG 1740
consensus_6175#1 -----------------------------------------------CCCCATG-CCGTT 12
* *** * **
consensus_6175#0 ACATGCGCACTAATCAGTAGTGGCCCGGAAGCAGTGTGTGTTTGTGACCTACT-GACCGT 1799
consensus_6175#1 ANAT-CCCCCTTATCCNTTATGCCCCGGAACCNTTGTGTTGTGGC--CCTACTTGNCCGT 69
* ** * * ** *** * ** ******* * ***** * * ****** * ****
consensus_6175#0 CGAGAAATGCAGTGTTGCCGTGCACCCAGAAACTGCGATCAGCTGTGCTGTCAGCTATGT 1859
consensus_6175#1 CGAAGAATGCCNTGTCCCCGTGCACCCCNGAACTGCGATCANCTGTGCTGTCAGCTATGT 129
*** ***** *** ********** *********** ******************
consensus_6175#0 TTTGTTTGTTCTATTGTACTACTGTACTCTAGCAGACAGTAGTTTGCATGGCAATAGTCA 1919
consensus_6175#1 TTTGTTTGTTCTATTGTACTACTGTACTCTAGCAGACAGTAGTTTGCATGGCAATAGTCA 189
************************************************************
consensus_6175#0 AGAGGAGAGTTGTATGATACTACTACTAGTAGCTAGTAGAAGATGGCGATACAGTGTGAT 1979
consensus_6175#1 AGAGGAGAGTTGTATGATACTACTACTAGTAGCTAGTAGAAGATGGCGATACAGTGTGAT 249
************************************************************
consensus_6175#0 AGGATGCTTGCTACCTTTGATCGACACACATGTTGTCGAGTTTTAGAATTTACCTACCGA 2039
consensus_6175#1 AGGATGCTTGCTACCTTTGATCGACACACATGTTGTCGAGTTTCAGAATTTACCTACCGA 309
******************************************* ****************
consensus_6175#0 GAAGGTAGTGACTGGAGAAGCAGCTTGTAGTAAGCAGAACAGGCACAAAAAAACTGA--- 2096
consensus_6175#1 GAAGGTAGTGACTGGAGAAGCAGCTTGTAGTAAGCAGAACAGGCACAAAAAAACTGAACT 369
*********************************************************
consensus_6175#0 ------------
consensus_6175#1 TTGCTTCAAAAA 381
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||