These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6177#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [TCTCAGCTAATTAATTAAGCTAACAGGCCAGCCAATCAGCCATGGCGGCCATGATGAACAACGAGAGATCAAGCAGCAACAAGCTGCAGGTTGACGCCGAGAACCCGGCGGCGGTGGGCGACGAGCTGGACCTGGCGGCGCGCGCCAACTGGCTGCGGGCGGCGGTGCTGGGCGCGAACGACGGGCTGGTGTCGACGGCGTCGCTGATGCTGGGGGTGGGCGCCGTGAAGGCGGAGGCGCGCGCCATGGTCATCTCCGGCTTCGCGGGCCTCCTGGCGGGCGCCTGCAGCATGGCCATCGGGGAGTTCGTGTCCGTGTGCTCGCAGCGCGATGTGGAGCTGGCGCAGCTGGAGCGCGATGGCAAGCGCGGCGGGGAGGAGGAGAAGGCCCTGCCGAGCCCCGCGCAGGCGGCGGCGGCGTCGGCCATGGCGTTCTCGGTGGGCGCCGTGGTGCCGCTGCTGGCGGCCGGGTTCATCGTCAACTACAGGCTGCGGATCGCGGTGGTGGTGGCGGTGGCGAGCGTGGCGCTGGCGGCGTTCGGGTGCGTGGGCGCGGTGCTGNGGCGGGCGGCGGTGGCGCGGTCGAGCGCGAGGGTGGTGCTCGGTG] [+] EMBL CA755865 [TCTCAGCTAATTAATTAAGCTAACAGGCCAGCCAATCAGCCATGGCGGCCATGATGAACAACGAGAGATCAAGCAGCAACAAGCTGCAGGTTGACGCCGAGAACCCGGCGGCGGTGGGCGACGAGCTGGACCTGGCGGCGCGCGCCAACTGGCTGCGGGCGGCGGTGCTGGGCGCGAACGACGGGCTGGTGTCGACGGCGTCGCTGATGCTGGGGGTGGGCGCCGTGAAGGCGGAGGCGCGCGCCATGGTCATCTCCGGCTTCGCGGGCCTCCTGGCGGGCGCCTGCAGCATGGCCATCGGGGAGTTCGTGTCCGTGTGCTCGCAGCGCGATGTGGAGCTGGCGCAGCTGGAGCGCGATGGCAAGCGCGGCGGGGAGGAGGAGAAGGCCCTGCCGAGCCCCGCGCAGGCGGCGGCGGCGTCGGCCATGGCGTTCTCGGTGGGCGCCGTGGTGCCGCTGCTGGCGGCCGGGTTCATCGTCAACTACAGGCTGCGGATCGCGGTGGTGGTGGCGGTGGCGAGCGTGGCGCTGGCGGCGTTCGGGTGCGTGGGCGCGGTGCTGNGGCGGGCGGCGGTGGCGCGGTCGAGCGCGAGGGTGGTGCTCGGTG] consensusID : consensus_6177#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 182 fasta sequence [GTTTAGTTTAATTAATGCAGTAAGTTTTAAAAAAAATGAACTTAGTAGTAGAGCAGAGAGCTTAATTAACTAGCTAGTGATCGATCGATCATATGCCGCTGGCCTTGAAGAGCCTCATGAGGCCGAAGGTGATGCCCATGGCGGGCCACCCACCGAGCACCACCCTCGCGCTCGACCGCGCC] [+] EMBL CB967341 [GTTTAGTTTAATTAATGCAGTAAGTTTTAAAAAAAATGAACTTAGTAGTAGAGCAGAGAGCTTAATTAACTAGCTAGTGATCGATCGATCATATGCCGCTGGCCTTGAAGAGCCTCATGAGGCCGAAGGTGATGCCCATGGCGGCCCACCCACCGAGCACCA CCTCGCGCTCGACCGGGCC] [+] EMBL CB965066 [ TTTAGTTTAATTAATGCAGTAAGTTTTAAAAAAAATGAACTTAGTAGTAGAGCAGAGAGCTTAATTAACTAGCTAGTGATCGATCGATCATATGCCGCTGGCCTTGAAGAGCCTCATGAGGCCGAAGGTGATGCCCATGGCGGGCCACCCACCGAGCACCACCCTCGCGCTCGACCGCGCC] [+] EMBL CB967338 [ TTTAGTTTAATTAATGCAGTAAGTTTTAAAAAAAATGAACTTAGTAGTAGAGC NAGAGCTTAATTAACTAGCTAGTGATCGATCGATCATATGCCGCTGGCCTTGAAGAGCCTCATGAGGCCGAAGGTGATGCCCATGGCGGNCCACCCACCGAGCACCACCCTCGCGCTCGACCGCGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6177#0 TCTCAGCTAATTAATTAAGCTAACAGGCCAGCCAATCAGCCATGGCGGCCATGATGAACA 60 consensus_6177#1 --------GTTTAGTTTAATTAATGCAGTAAGTT-TTAAAAAAAATGAACTTAGTAGTAG 51 *** ** * *** * * * * * * * * consensus_6177#0 ACGAGAGATCAAGCAGCAACAAGCTGCAGGTTGACGCCGAGAACCCGGCGGCGGTGGGCG 120 consensus_6177#1 AGCAGAGAGCTTA-ATTAACTAGCTAGTGATCGA--TCGATCATATGCCGCTGGCCT-TG 107 * ***** * * *** **** * * ** *** * * ** ** * consensus_6177#0 ACGAGCTGGACCTGGCGGCGCGCGCCAACTGGCTGCGGGCGGCGGTGCTGGGCGCGAACG 180 consensus_6177#1 AAGAGCCTCATGAGGCCGAAGGTGATGCCCA-TGGCGGGCCACC-CACCGAGCACCACCC 165 * **** * *** * * * * ****** * * * ** * * * consensus_6177#0 ACGGGCTGGTGTCGACGGCGTCGCTGATGCTGGGGGTGGGCGCCGTGAAGGCGGAGGCGC 240 consensus_6177#1 TCGCGCT-----CGACCGCGCC-------------------------------------- 182 ** *** **** *** * consensus_6177#0 GCGCCATGGTCATCTCCGGCTTCGCGGGCCTCCTGGCGGGCGCCTGCAGCATGGCCATCG 300 consensus_6177#1 ------------------------------------------------------------ consensus_6177#0 GGGAGTTCGTGTCCGTGTGCTCGCAGCGCGATGTGGAGCTGGCGCAGCTGGAGCGCGATG 360 consensus_6177#1 ------------------------------------------------------------ consensus_6177#0 GCAAGCGCGGCGGGGAGGAGGAGAAGGCCCTGCCGAGCCCCGCGCAGGCGGCGGCGGCGT 420 consensus_6177#1 ------------------------------------------------------------ consensus_6177#0 CGGCCATGGCGTTCTCGGTGGGCGCCGTGGTGCCGCTGCTGGCGGCCGGGTTCATCGTCA 480 consensus_6177#1 ------------------------------------------------------------ consensus_6177#0 ACTACAGGCTGCGGATCGCGGTGGTGGTGGCGGTGGCGAGCGTGGCGCTGGCGGCGTTCG 540 consensus_6177#1 ------------------------------------------------------------ consensus_6177#0 GGTGCGTGGGCGCGGTGCTGNGGCGGGCGGCGGTGGCGCGGTCGAGCGCGAGGGTGGTGC 600 consensus_6177#1 ------------------------------------------------------------ consensus_6177#0 TCGGTG 606 consensus_6177#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||