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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6177 cluster # 6177       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6177#0 length = 606 sequences # 1  
consensus_6177#1 length = 182 sequences # 3  

consensusID : consensus_6177#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence
                              [TCTCAGCTAATTAATTAAGCTAACAGGCCAGCCAATCAGCCATGGCGGCCATGATGAACAACGAGAGATCAAGCAGCAACAAGCTGCAGGTTGACGCCGAGAACCCGGCGGCGGTGGGCGACGAGCTGGACCTGGCGGCGCGCGCCAACTGGCTGCGGGCGGCGGTGCTGGGCGCGAACGACGGGCTGGTGTCGACGGCGTCGCTGATGCTGGGGGTGGGCGCCGTGAAGGCGGAGGCGCGCGCCATGGTCATCTCCGGCTTCGCGGGCCTCCTGGCGGGCGCCTGCAGCATGGCCATCGGGGAGTTCGTGTCCGTGTGCTCGCAGCGCGATGTGGAGCTGGCGCAGCTGGAGCGCGATGGCAAGCGCGGCGGGGAGGAGGAGAAGGCCCTGCCGAGCCCCGCGCAGGCGGCGGCGGCGTCGGCCATGGCGTTCTCGGTGGGCGCCGTGGTGCCGCTGCTGGCGGCCGGGTTCATCGTCAACTACAGGCTGCGGATCGCGGTGGTGGTGGCGGTGGCGAGCGTGGCGCTGGCGGCGTTCGGGTGCGTGGGCGCGGTGCTGNGGCGGGCGGCGGTGGCGCGGTCGAGCGCGAGGGTGGTGCTCGGTG]

[+] EMBL CA755865             [TCTCAGCTAATTAATTAAGCTAACAGGCCAGCCAATCAGCCATGGCGGCCATGATGAACAACGAGAGATCAAGCAGCAACAAGCTGCAGGTTGACGCCGAGAACCCGGCGGCGGTGGGCGACGAGCTGGACCTGGCGGCGCGCGCCAACTGGCTGCGGGCGGCGGTGCTGGGCGCGAACGACGGGCTGGTGTCGACGGCGTCGCTGATGCTGGGGGTGGGCGCCGTGAAGGCGGAGGCGCGCGCCATGGTCATCTCCGGCTTCGCGGGCCTCCTGGCGGGCGCCTGCAGCATGGCCATCGGGGAGTTCGTGTCCGTGTGCTCGCAGCGCGATGTGGAGCTGGCGCAGCTGGAGCGCGATGGCAAGCGCGGCGGGGAGGAGGAGAAGGCCCTGCCGAGCCCCGCGCAGGCGGCGGCGGCGTCGGCCATGGCGTTCTCGGTGGGCGCCGTGGTGCCGCTGCTGGCGGCCGGGTTCATCGTCAACTACAGGCTGCGGATCGCGGTGGTGGTGGCGGTGGCGAGCGTGGCGCTGGCGGCGTTCGGGTGCGTGGGCGCGGTGCTGNGGCGGGCGGCGGTGGCGCGGTCGAGCGCGAGGGTGGTGCTCGGTG]


>consensus_6177#0 TCTCAGCTAATTAATTAAGCTAACAGGCCAGCCAATCAGCCATGGCGGCCATGATGAACA ACGAGAGATCAAGCAGCAACAAGCTGCAGGTTGACGCCGAGAACCCGGCGGCGGTGGGCG ACGAGCTGGACCTGGCGGCGCGCGCCAACTGGCTGCGGGCGGCGGTGCTGGGCGCGAACG ACGGGCTGGTGTCGACGGCGTCGCTGATGCTGGGGGTGGGCGCCGTGAAGGCGGAGGCGC GCGCCATGGTCATCTCCGGCTTCGCGGGCCTCCTGGCGGGCGCCTGCAGCATGGCCATCG GGGAGTTCGTGTCCGTGTGCTCGCAGCGCGATGTGGAGCTGGCGCAGCTGGAGCGCGATG GCAAGCGCGGCGGGGAGGAGGAGAAGGCCCTGCCGAGCCCCGCGCAGGCGGCGGCGGCGT CGGCCATGGCGTTCTCGGTGGGCGCCGTGGTGCCGCTGCTGGCGGCCGGGTTCATCGTCA ACTACAGGCTGCGGATCGCGGTGGTGGTGGCGGTGGCGAGCGTGGCGCTGGCGGCGTTCG GGTGCGTGGGCGCGGTGCTGNGGCGGGCGGCGGTGGCGCGGTCGAGCGCGAGGGTGGTGC TCGGTG



consensusID : consensus_6177#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 182
fasta sequence
                              [GTTTAGTTTAATTAATGCAGTAAGTTTTAAAAAAAATGAACTTAGTAGTAGAGCAGAGAGCTTAATTAACTAGCTAGTGATCGATCGATCATATGCCGCTGGCCTTGAAGAGCCTCATGAGGCCGAAGGTGATGCCCATGGCGGGCCACCCACCGAGCACCACCCTCGCGCTCGACCGCGCC]

[+] EMBL CB967341             [GTTTAGTTTAATTAATGCAGTAAGTTTTAAAAAAAATGAACTTAGTAGTAGAGCAGAGAGCTTAATTAACTAGCTAGTGATCGATCGATCATATGCCGCTGGCCTTGAAGAGCCTCATGAGGCCGAAGGTGATGCCCATGGCGGCCCACCCACCGAGCACCA CCTCGCGCTCGACCGGGCC]
[+] EMBL CB965066             [ TTTAGTTTAATTAATGCAGTAAGTTTTAAAAAAAATGAACTTAGTAGTAGAGCAGAGAGCTTAATTAACTAGCTAGTGATCGATCGATCATATGCCGCTGGCCTTGAAGAGCCTCATGAGGCCGAAGGTGATGCCCATGGCGGGCCACCCACCGAGCACCACCCTCGCGCTCGACCGCGCC]
[+] EMBL CB967338             [ TTTAGTTTAATTAATGCAGTAAGTTTTAAAAAAAATGAACTTAGTAGTAGAGC NAGAGCTTAATTAACTAGCTAGTGATCGATCGATCATATGCCGCTGGCCTTGAAGAGCCTCATGAGGCCGAAGGTGATGCCCATGGCGGNCCACCCACCGAGCACCACCCTCGCGCTCGACCGCGCC]


>consensus_6177#1 GTTTAGTTTAATTAATGCAGTAAGTTTTAAAAAAAATGAACTTAGTAGTAGAGCAGAGAG CTTAATTAACTAGCTAGTGATCGATCGATCATATGCCGCTGGCCTTGAAGAGCCTCATGA GGCCGAAGGTGATGCCCATGGCGGGCCACCCACCGAGCACCACCCTCGCGCTCGACCGCG CC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6177#0      TCTCAGCTAATTAATTAAGCTAACAGGCCAGCCAATCAGCCATGGCGGCCATGATGAACA 60
consensus_6177#1      --------GTTTAGTTTAATTAATGCAGTAAGTT-TTAAAAAAAATGAACTTAGTAGTAG 51
                                *** ** *  ***      *     * *   *    *  * *  *     

consensus_6177#0      ACGAGAGATCAAGCAGCAACAAGCTGCAGGTTGACGCCGAGAACCCGGCGGCGGTGGGCG 120
consensus_6177#1      AGCAGAGAGCTTA-ATTAACTAGCTAGTGATCGA--TCGATCATATGCCGCTGGCCT-TG 107
                      *  ***** *    *  *** ****   * * **   ***  *   * **  **     *

consensus_6177#0      ACGAGCTGGACCTGGCGGCGCGCGCCAACTGGCTGCGGGCGGCGGTGCTGGGCGCGAACG 180
consensus_6177#1      AAGAGCCTCATGAGGCCGAAGGTGATGCCCA-TGGCGGGCCACC-CACCGAGCACCACCC 165
                      * ****   *   *** *   * *    *     ******  *    * * ** * * * 

consensus_6177#0      ACGGGCTGGTGTCGACGGCGTCGCTGATGCTGGGGGTGGGCGCCGTGAAGGCGGAGGCGC 240
consensus_6177#1      TCGCGCT-----CGACCGCGCC-------------------------------------- 182
                       ** ***     **** *** *                                      

consensus_6177#0      GCGCCATGGTCATCTCCGGCTTCGCGGGCCTCCTGGCGGGCGCCTGCAGCATGGCCATCG 300
consensus_6177#1      ------------------------------------------------------------
                                                                                  

consensus_6177#0      GGGAGTTCGTGTCCGTGTGCTCGCAGCGCGATGTGGAGCTGGCGCAGCTGGAGCGCGATG 360
consensus_6177#1      ------------------------------------------------------------
                                                                                  

consensus_6177#0      GCAAGCGCGGCGGGGAGGAGGAGAAGGCCCTGCCGAGCCCCGCGCAGGCGGCGGCGGCGT 420
consensus_6177#1      ------------------------------------------------------------
                                                                                  

consensus_6177#0      CGGCCATGGCGTTCTCGGTGGGCGCCGTGGTGCCGCTGCTGGCGGCCGGGTTCATCGTCA 480
consensus_6177#1      ------------------------------------------------------------
                                                                                  

consensus_6177#0      ACTACAGGCTGCGGATCGCGGTGGTGGTGGCGGTGGCGAGCGTGGCGCTGGCGGCGTTCG 540
consensus_6177#1      ------------------------------------------------------------
                                                                                  

consensus_6177#0      GGTGCGTGGGCGCGGTGCTGNGGCGGGCGGCGGTGGCGCGGTCGAGCGCGAGGGTGGTGC 600
consensus_6177#1      ------------------------------------------------------------
                                                                                  

consensus_6177#0      TCGGTG 606
consensus_6177#1      ------
                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)