These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 863 fasta sequence [CAGCATCACATTCGCCGCTAGCGCCGGCTCCCTCGCCGCCGCCGCCACCCCCATCTCCGCCGCAACCAAGGTTTGAAGC-TACTGGGAG-GGAGGGGGAGCCCAGGAGCGAGCCGCTGGCTGGGTAGAGAGGAGGGATCTAGTCGAGAGAGATGGGGTGGAAGGCTGCGGAGAAGCTCATCAGACACTGGAAGATCCTCCGCGGTGACGACGTGATGATCATAAGAGG-CAAGGACAAGGGGGAGAGCGGGCTCATCAAGCGGGTCATCCGGTCGCAGAACCGTGTCATCGTCGAGGGAAAGAATTTGGTTAAGAAACATATTAAGCAAGGAGAAGGACATACAGGTGGGATTTTCTCAATTGAAGCTCCACTTCATGTTTCAAATGTTCAAGTACTTGATCCAGTCACTGGGAAACCATGTAAGATTGGATACAAGTATTTGGAAGATGGGACTAAAGTCAGGTTTGCTAGAGGAATGAATGCATCTGGTGCTGTGATACCCAGGCCAGAAATTTTGAAGGAGCGAAGAAAGCCAAGACCTACATCACCTGGCCCAAAGGATACACCAATTGAGCATGTGCTGGAGAAAACCTATGATGCCAAGGCTGGAATTGGGATGCCTGATCTATAGGCTAGTTCTGTCTGGGTTGCTACTCAGGGAGAGTTCATTGTATGTGTGACAACACCCCAGTTCAGATAGCAGGAAGTCTGTCCTCAACTTTGCACCTGTATTGCTCTCGAAATAATTTTGTAATGGTCACTGAAAAAGCATCACCCGCATGTTTTTAGTCTCTGTTTTGGTTAGATTCTTTATCCCACTGGAAATGCACATACATTTGGCAAAAAAAGTTCAAATCATATATTC] [+] EMBL CF336630 [CAGCATCACATTCGCCGCTAGCGCCGGCTCCCTCGCCGCCGCCGCCACCCCCATCTCCGCCGCAACCAAGGTTTGAAGCTTACTGGGAG GGAGGGGGAGCCCAGGAGCGAGCCGCTGGCTGGGTAGAGAGGAGGGATCTAGTCGAGAGAGATGGGGTGGAAGGCTGCGGAGAAGCTCATCAGACACTGGAAGATCCTCCGCGGTGACGACGTGATGATCATAAGAGG CAAGGACAAGGGGGAGAGCGGGCTCATCAAGCGGGTCATTCGGTCGCAGAACCGTGTCATCGTCGAGGGAAAGAATTTGGTTAAGAAACATATTAAGCAAGGAGAAGGACATACAGGTGGGATTTTCTCAATTGAAGCTCCAC ] [+] EMBL AK121443 [ CGCCATCCCCATCTCCGCCGCAACCAAGGCTTGAGGC TACTGGCCGTGGAGGGGGAACCCAAGAGCGAGCCGCGGGCGGGGAAGAGAGGAGGGATCTAGGCGAGAGAGATGGGGTGGAAGGCTGCCGAGAAGCTCATCAGGCACTGGAAGATCCTCCGCGGTGACAACGTGATGATTATAAGAGG CAAGGACAAGGGGGAGAGCGGGCTCATCAAGCGGGTCATCCGGTCGCAGAACCGTGTCATCGTCGAGGGAAAGAATTTGGTTAAGAAACATATCAAGCAAGGAGAAGGACATACAGGTGGGATTTTCTCAATTGAAGCTCCACTTCATGTTTCAAATGTTCAAGTACTTGATCCAGTCACTGGGAAACCATGTAAGATTGGATACAAGTATTTGGAAGATGGGACTAAAGTCAGGTTTGCTAGAGGAATGAATGCATCTGGTGCTGTGATACCCAGGCCAGAAATTTTGAAGGAGCGAAGAAAGCCAAGACCTACATCACCTGGCCCAAAGGATACACCAATTGAGCATGTGCTGGAGAAAACCTATGATGCCAAGGCTGGAATTGGGATGCCTGATCTATAGGCTAGTTCTGTCTGGGTTGCTACTCAGGGAGAGTTCATTGTATGTGTGACAACACCCCAGTTCAGATAGCAGGAAGTCTGTCCTCAACTTTGCACCTGTATTGCTCTCGAAATAATTTTGTAATGGTCACTGAAAAAGCATCACCCGCATGTTTTTAGTCTCTGTTTTGGTTAGATTCTTTATCCCACTGGAAATGCACATACATTTGGCAAAAAAAGTTCAAATCATATATTC] [-] EMBL CA759566 [ AGAGGACGA GACAAGGGGGAGAGCGGGCTCATCAAGCGGGTCATCCGGTCGCAGAACCGTGTCATCGTCGAGGGAAAGAATTTGGTTAAGAAACATATTAAGCAAGGAGAAGGACATACAGGTGGGATTTTCTCAATTGAAGCTCCACTTCATGTTTCAAATGTTCAAGTACTTGATCCAGTCACTGGGAAACCATGCAAGATTGGATACAAGTATTTGGAAGATGGGACTAAAGTCAGGTTTGCTAGAGGAATGAATGCATCTGGTGCTGTGATACCCAGGCCAGAAATTTTGAAGGAGCGAAGAAAGCCAAGACCTACATCACCTGGCCCAAAGGATACACCAATTGAGCATGTGCTGGAGAAAACCTATGATGCCAAGGCTGGAATTGGGATGCCTGATCTATAGGCTAGTTCTGTCTGGGTTGCTACTCAGGGAGAGTTCATTGTATGTGTGACAACACCCCAGTTCAGATAGCAGGAAGTCTGTCCTCAACTTTGCACCTGTATTGCTCTCGAAATAATTTTGTAATGGTCACTGAAAAAGCATCACCCGCATGTTTTTAGTCTCTGTTTTGGTTAaa ] consensusID : consensus_6180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [TAGGTGGACGAGACAAGGGGGGATCTAGTCGAGAGAGATGGGGTGGAAGGCTGCGGAGAAGCTCATCAGACACTGGAAGATCCTCCGCGGTGACAACGTGATGATCATAAGAGGCAAGGACAAGGGGGAGAGCGGGCTCATCAAGCGGGTCATTCGGTCGCAGAACCGTGTAATCGTCGAGGGAAAGAATTTGGTTAAGAAACATATTAAGCAAGGAGAAGGACATACAGGTGGGATTTTCTCAATTGAAGCTCCACTTCATGTTTCAAATGTTCAAGTACTTGATCCAGTCACTGGGAAACCATGTAAGATTGGATACAAGTATTTGGAAGATGGAACTAAAGTCAGGTTTGCTAGAGGAATGAATGCATCTGGTGCTGTGATACCCAGGCCAGAAATTTTGAAGGAGCGAAGAAAGCCAAGACCTACATCACCTGGCCCAAAGGATACACCAATTGAACATGTGCTGGAGAAAACCTATGATGCCAAGGCTGGAATCGGGATGCCTGATCTATAGGTTAGTGCTGTCTGGGTTGCAGAGTTCATTGTATGTGTGGCAACACCCCAGTTCAGATAGCAGGAAGTCTTTCTTCAACTTTGCACCTGTATTGCTCTCGAAATAATTTTGTTATGGTCATTGAAAAAACATTTCCCAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA759567 [TAGGTGGACGAGACAAGGGGGGATCTAGTCGAGAGAGATGGGGTGGAAGGCTGCGGAGAAGCTCATCAGACACTGGAAGATCCTCCGCGGTGACAACGTGATGATCATAAGAGGCAAGGACAAGGGGGAGAGCGGGCTCATCAAGCGGGTCATTCGGTCGCAGAACCGTGTAATCGTCGAGGGAAAGAATTTGGTTAAGAAACATATTAAGCAAGGAGAAGGACATACAGGTGGGATTTTCTCAATTGAAGCTCCACTTCATGTTTCAAATGTTCAAGTACTTGATCCAGTCACTGGGAAACCATGTAAGATTGGATACAAGTATTTGGAAGATGGAACTAAAGTCAGGTTTGCTAGAGGAATGAATGCATCTGGTGCTGTGATACCCAGGCCAGAAATTTTGAAGGAGCGAAGAAAGCCAAGACCTACATCACCTGGCCCAAAGGATACACCAATTGAACATGTGCTGGAGAAAACCTATGATGCCAAGGCTGGAATCGGGATGCCTGATCTATAGGTTAGTGCTGTCTGGGTTGCAGAGTTCATTGTATGTGTGGCAACACCCCAGTTCAGATAGCAGGAAGTCTTTCTTCAACTTTGCACCTGTATTGCTCTCGAAATAATTTTGTTATGGTCATTGAAAAAACATTTCCCAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6180#0 CAGCATCACATTCGCCGCTAGCGCCGGCTCCCTCGCCGCCGCCGCCACCCCCATCTCCGC 60 consensus_6180#1 ------------------------------------------------------------ consensus_6180#0 CGCAACCAAGGTTTGAAGCTACTGGGAGGGAGGGGGAGCCCAGGAGCGAGCCGCTGGCTG 120 consensus_6180#1 ------------------------------------------------------TAGGTG 6 * * ** consensus_6180#0 GGTAGAG--AGGAGGGATCTAGTCGAGAGAGATGGGGTGGAAGGCTGCGGAGAAGCTCAT 178 consensus_6180#1 GACGAGACAAGGGGGGATCTAGTCGAGAGAGATGGGGTGGAAGGCTGCGGAGAAGCTCAT 66 * *** *********************************************** consensus_6180#0 CAGACACTGGAAGATCCTCCGCGGTGACGACGTGATGATCATAAGAGGCAAGGACAAGGG 238 consensus_6180#1 CAGACACTGGAAGATCCTCCGCGGTGACAACGTGATGATCATAAGAGGCAAGGACAAGGG 126 **************************** ******************************* consensus_6180#0 GGAGAGCGGGCTCATCAAGCGGGTCATCCGGTCGCAGAACCGTGTCATCGTCGAGGGAAA 298 consensus_6180#1 GGAGAGCGGGCTCATCAAGCGGGTCATTCGGTCGCAGAACCGTGTAATCGTCGAGGGAAA 186 *************************** ***************** ************** consensus_6180#0 GAATTTGGTTAAGAAACATATTAAGCAAGGAGAAGGACATACAGGTGGGATTTTCTCAAT 358 consensus_6180#1 GAATTTGGTTAAGAAACATATTAAGCAAGGAGAAGGACATACAGGTGGGATTTTCTCAAT 246 ************************************************************ consensus_6180#0 TGAAGCTCCACTTCATGTTTCAAATGTTCAAGTACTTGATCCAGTCACTGGGAAACCATG 418 consensus_6180#1 TGAAGCTCCACTTCATGTTTCAAATGTTCAAGTACTTGATCCAGTCACTGGGAAACCATG 306 ************************************************************ consensus_6180#0 TAAGATTGGATACAAGTATTTGGAAGATGGGACTAAAGTCAGGTTTGCTAGAGGAATGAA 478 consensus_6180#1 TAAGATTGGATACAAGTATTTGGAAGATGGAACTAAAGTCAGGTTTGCTAGAGGAATGAA 366 ****************************** ***************************** consensus_6180#0 TGCATCTGGTGCTGTGATACCCAGGCCAGAAATTTTGAAGGAGCGAAGAAAGCCAAGACC 538 consensus_6180#1 TGCATCTGGTGCTGTGATACCCAGGCCAGAAATTTTGAAGGAGCGAAGAAAGCCAAGACC 426 ************************************************************ consensus_6180#0 TACATCACCTGGCCCAAAGGATACACCAATTGAGCATGTGCTGGAGAAAACCTATGATGC 598 consensus_6180#1 TACATCACCTGGCCCAAAGGATACACCAATTGAACATGTGCTGGAGAAAACCTATGATGC 486 ********************************* ************************** consensus_6180#0 CAAGGCTGGAATTGGGATGCCTGATCTATAGGCTAGTTCTGTCTGGGTTGCTACTCAGGG 658 consensus_6180#1 CAAGGCTGGAATCGGGATGCCTGATCTATAGGTTAGTGCTGTCTGGGTTGC--------- 537 ************ ******************* **** ************* consensus_6180#0 AGAGTTCATTGTATGTGTGACAACACCCCAGTTCAGATAGCAGGAAGTCTGTCCTCAACT 718 consensus_6180#1 AGAGTTCATTGTATGTGTGGCAACACCCCAGTTCAGATAGCAGGAAGTCTTTCTTCAACT 597 ******************* ****************************** ** ****** consensus_6180#0 TTGCACCTGTATTGCTCTCGAAATAATTTTGTAATGGTCACTGAAAAAGCATCACCCGCA 778 consensus_6180#1 TTGCACCTGTATTGCTCTCGAAATAATTTTGTTATGGTCATTGAAAAAACATTTCCCAAA 657 ******************************** ******* ******* *** *** * consensus_6180#0 TGTTTTTAGTCTCTGTTTTGGTTAGATTCTTTATCCCACTGGAAATGCACATACATTTGG 838 consensus_6180#1 AAAAAAAAAAAAAAAAA------------------------------------------- 674 * consensus_6180#0 CAAAAAAAGTTCAAATCATATATTC 863 consensus_6180#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||