These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 890 fasta sequence [GTGGGTGAGGTGAGGGAGCCTCGCGCCGGCTTTGGATTTTTCGTTCTGCCTCGCGACCGACGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGGCGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCTTCTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACAACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGC-TCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTACGTGTAGCTGTAACACAAAAACTGAGGGAAAAGATACCATCCATCCTGGCTGTTCAGTTGACAGAGTAGAAACATGAGTTCAGTTATGCAGCAACTCAAGAGAAAACAAAACTTTGATTTTCAGTGATTTTGTGGTATTCAGTCTCAGTCTTGTGGTTTTGAATCAAAACTGAAGTACTGAACGTCTGAACCTATCATACCATCTTTAAATGCAAGTGT] [+] EMBL AK067484 [GTGGGTGAGGTGAGGGAGCCTCGCGCCGGCTTTGGATTTTTCGTTCTGCCTCGCGACCGACGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGGCGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCTTCTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACAACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGC TCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTACGTGTAGCTGTAACACAAAAACTGAGGGAAAAGATACCATCCATCCTGGCTGTTCAGTTGACAGAGTAGAAACATGAGTTCAGTTATGCAGCAACTCAAGAGAAAACAAAACTTTGATTTTCAGTGATTTTGTGGTATTCAGTCTCAGTCTTGTGGTTTTGAATCAAAACTGAAGTACTGAACGTCTGAACCTATCATACCATCTTTAAATGCAAGTGT] [+] EMBL AK103983 [ TGGGTGAGGCGAGGGAGCCTCGCGCCGGCTTTGGATTTTTCGTTCTGCCTCGCGACCGACGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGGCGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCTTCTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACAACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGC TCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTACGTGTAGCTGTAACACAAAAACTGAGGGAAAAGATACCATCCATCCTGGCTGTTCAGTTGACAGAGTAGAAACATGAGTTCAGTTATGCAGCAACTCAAGAGAAAACAAAACTTTGA TTTCAGTGATTTTGTGGTATTCAGTCTCAGTCTTGTGGTTTTGAATCAAAACTGAAGTACTGAACGTCTGAACCTATCA ] [-] EMBL CF291216 [ GGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGCTTCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTTGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTACGTGTAGCTGTAACACAAAAACTGAGGGAAACGATACCATCCATCCTGGCTGTTCAGTTGACAGAGTAGAAACATGAGTTCAGTTATGCAGCAACTCAAGAGAAAACAAAACTTTGATTTTCAaaaaa ] consensusID : consensus_6181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [GGACTGAAGGAGTAGAAACTCGCGACCGACGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGGCGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCCTCTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACAACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGCTCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTA] [+] EMBL CF291217 [GGACTGAAGGAGTAGAAACTCGCGACCGACGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGGCGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCCTCTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACAACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGCTCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6181#0 GTGGGTGAGGTGAGGGAGCCTCGCGCCGGCTTTGGATTTTTCGTTCTGCCTCGCGACCGA 60 consensus_6181#1 ----------------------------GGACTGAAGG---AGTAGAAACTCGCGACCGA 29 * ** * ** *********** consensus_6181#0 CGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGG 120 consensus_6181#1 CGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGG 89 ************************************************************ consensus_6181#0 CGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCTT 180 consensus_6181#1 CGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCCT 149 ********************************************************** * consensus_6181#0 CTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACA 240 consensus_6181#1 CTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACA 209 ************************************************************ consensus_6181#0 ACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGG 300 consensus_6181#1 ACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGG 269 ************************************************************ consensus_6181#0 AGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGC 360 consensus_6181#1 AGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGC 329 ************************************************************ consensus_6181#0 ACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCA 420 consensus_6181#1 ACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCA 389 ************************************************************ consensus_6181#0 GCTCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGA 480 consensus_6181#1 GCTCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGA 449 ************************************************************ consensus_6181#0 TCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACG 540 consensus_6181#1 TCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACG 509 ************************************************************ consensus_6181#0 TCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTG 600 consensus_6181#1 TCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTG 569 ************************************************************ consensus_6181#0 ATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTG 660 consensus_6181#1 ATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTG 629 ************************************************************ consensus_6181#0 TAATGACAGTACGTGTAGCTGTAACACAAAAACTGAGGGAAAAGATACCATCCATCCTGG 720 consensus_6181#1 TAATGACAGTA------------------------------------------------- 640 *********** consensus_6181#0 CTGTTCAGTTGACAGAGTAGAAACATGAGTTCAGTTATGCAGCAACTCAAGAGAAAACAA 780 consensus_6181#1 ------------------------------------------------------------ consensus_6181#0 AACTTTGATTTTCAGTGATTTTGTGGTATTCAGTCTCAGTCTTGTGGTTTTGAATCAAAA 840 consensus_6181#1 ------------------------------------------------------------ consensus_6181#0 CTGAAGTACTGAACGTCTGAACCTATCATACCATCTTTAAATGCAAGTGT 890 consensus_6181#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||