Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6181 cluster # 6181       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6181#0 length = 890 sequences # 3  
consensus_6181#1 length = 640 sequences # 1  

consensusID : consensus_6181#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 890
fasta sequence
                              [GTGGGTGAGGTGAGGGAGCCTCGCGCCGGCTTTGGATTTTTCGTTCTGCCTCGCGACCGACGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGGCGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCTTCTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACAACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGC-TCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTACGTGTAGCTGTAACACAAAAACTGAGGGAAAAGATACCATCCATCCTGGCTGTTCAGTTGACAGAGTAGAAACATGAGTTCAGTTATGCAGCAACTCAAGAGAAAACAAAACTTTGATTTTCAGTGATTTTGTGGTATTCAGTCTCAGTCTTGTGGTTTTGAATCAAAACTGAAGTACTGAACGTCTGAACCTATCATACCATCTTTAAATGCAAGTGT]

[+] EMBL AK067484             [GTGGGTGAGGTGAGGGAGCCTCGCGCCGGCTTTGGATTTTTCGTTCTGCCTCGCGACCGACGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGGCGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCTTCTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACAACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGC TCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTACGTGTAGCTGTAACACAAAAACTGAGGGAAAAGATACCATCCATCCTGGCTGTTCAGTTGACAGAGTAGAAACATGAGTTCAGTTATGCAGCAACTCAAGAGAAAACAAAACTTTGATTTTCAGTGATTTTGTGGTATTCAGTCTCAGTCTTGTGGTTTTGAATCAAAACTGAAGTACTGAACGTCTGAACCTATCATACCATCTTTAAATGCAAGTGT]
[+] EMBL AK103983             [ TGGGTGAGGCGAGGGAGCCTCGCGCCGGCTTTGGATTTTTCGTTCTGCCTCGCGACCGACGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGGCGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCTTCTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACAACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGC TCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTACGTGTAGCTGTAACACAAAAACTGAGGGAAAAGATACCATCCATCCTGGCTGTTCAGTTGACAGAGTAGAAACATGAGTTCAGTTATGCAGCAACTCAAGAGAAAACAAAACTTTGA TTTCAGTGATTTTGTGGTATTCAGTCTCAGTCTTGTGGTTTTGAATCAAAACTGAAGTACTGAACGTCTGAACCTATCA                      ]
[-] EMBL CF291216             [                                                                                                                                                                                                                                                                     GGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGCTTCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTTGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTACGTGTAGCTGTAACACAAAAACTGAGGGAAACGATACCATCCATCCTGGCTGTTCAGTTGACAGAGTAGAAACATGAGTTCAGTTATGCAGCAACTCAAGAGAAAACAAAACTTTGATTTTCAaaaaa                                                                                           ]


>consensus_6181#0 GTGGGTGAGGTGAGGGAGCCTCGCGCCGGCTTTGGATTTTTCGTTCTGCCTCGCGACCGA CGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGG CGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCTT CTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACA ACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGG AGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGC ACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCA GCTCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGA TCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACG TCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTG ATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTG TAATGACAGTACGTGTAGCTGTAACACAAAAACTGAGGGAAAAGATACCATCCATCCTGG CTGTTCAGTTGACAGAGTAGAAACATGAGTTCAGTTATGCAGCAACTCAAGAGAAAACAA AACTTTGATTTTCAGTGATTTTGTGGTATTCAGTCTCAGTCTTGTGGTTTTGAATCAAAA CTGAAGTACTGAACGTCTGAACCTATCATACCATCTTTAAATGCAAGTGT



consensusID : consensus_6181#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence
                              [GGACTGAAGGAGTAGAAACTCGCGACCGACGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGGCGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCCTCTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACAACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGCTCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTA]

[+] EMBL CF291217             [GGACTGAAGGAGTAGAAACTCGCGACCGACGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGGCGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCCTCTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACAACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGCTCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTA]


>consensus_6181#1 GGACTGAAGGAGTAGAAACTCGCGACCGACGATAAAAATCGTGCGTCCGATGAGGCCCTT CTCCCCTCATCTCCGGCAAGCCGCGGCGGCGGCGGCTGCTGCGGCCACTGGCGCTCCTCC CCTCGCCGCAGCTCTCCTCAAGAATTCCTCTGCTCCCCTTATCCATGGCCGGCTCAGCTT CAGCCACACGTCGCTGCAGTCACCGAACAACCGCGGGAAACGAACAGGCTGGGCGGTGCG TGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCT GATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAA GCTGCAGGGCGCCTGCGGCTCGTGCCCCAGCTCCACCATGACGCTCAAGATGGGCATCGA GACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTCGACACCGA GACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATA CCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAA AGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6181#0      GTGGGTGAGGTGAGGGAGCCTCGCGCCGGCTTTGGATTTTTCGTTCTGCCTCGCGACCGA 60
consensus_6181#1      ----------------------------GGACTGAAGG---AGTAGAAACTCGCGACCGA 29
                                                  *   ** *      **     ***********

consensus_6181#0      CGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGG 120
consensus_6181#1      CGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGG 89
                      ************************************************************

consensus_6181#0      CGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCTT 180
consensus_6181#1      CGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCCT 149
                      ********************************************************** *

consensus_6181#0      CTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACA 240
consensus_6181#1      CTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACA 209
                      ************************************************************

consensus_6181#0      ACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGG 300
consensus_6181#1      ACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGG 269
                      ************************************************************

consensus_6181#0      AGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGC 360
consensus_6181#1      AGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGC 329
                      ************************************************************

consensus_6181#0      ACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCA 420
consensus_6181#1      ACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCA 389
                      ************************************************************

consensus_6181#0      GCTCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGA 480
consensus_6181#1      GCTCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGA 449
                      ************************************************************

consensus_6181#0      TCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACG 540
consensus_6181#1      TCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACG 509
                      ************************************************************

consensus_6181#0      TCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTG 600
consensus_6181#1      TCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTG 569
                      ************************************************************

consensus_6181#0      ATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTG 660
consensus_6181#1      ATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTG 629
                      ************************************************************

consensus_6181#0      TAATGACAGTACGTGTAGCTGTAACACAAAAACTGAGGGAAAAGATACCATCCATCCTGG 720
consensus_6181#1      TAATGACAGTA------------------------------------------------- 640
                      ***********                                                 

consensus_6181#0      CTGTTCAGTTGACAGAGTAGAAACATGAGTTCAGTTATGCAGCAACTCAAGAGAAAACAA 780
consensus_6181#1      ------------------------------------------------------------
                                                                                  

consensus_6181#0      AACTTTGATTTTCAGTGATTTTGTGGTATTCAGTCTCAGTCTTGTGGTTTTGAATCAAAA 840
consensus_6181#1      ------------------------------------------------------------
                                                                                  

consensus_6181#0      CTGAAGTACTGAACGTCTGAACCTATCATACCATCTTTAAATGCAAGTGT 890
consensus_6181#1      --------------------------------------------------
                                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)