cluster # 619

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Oryza sativa
cluster # 619 cluster # 619 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_619#0 length = 592 sequences # 1

consensus_619#1 length = 343 sequences # 1

consensusID : consensus_619#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 592
fasta sequence

                              [GGGGATCACCGCCCTCGCTCCCAGCAGCATGAAGATCAAGGTCGTCGCGCCGCCCGAGAGGAAGTACTCCGTCTGGATCGGAGGCTCCATCCTCGCATCACTCAGCACCTTCCAGCAGATGTGGATTGCCAAGGCTGAGTACGACGAGTCCGGCCCCTCCATCGTTCACCGAAAGTGCTTCTAATTTCTTTTTTTACCTATTAATTAATGATTAATCCTTAATTAAAAAACAACAATAAACTAACTAAGCACCACATAATATATATATGCTACTTATAAGAGTACGTCACCACCACACCGCTCCTCACGTCCAGCTTCCTTTTTCCATTTCTCCCCTATTTTCTTTCTTATACACTACAATTATCCACTCATTTGGAGGTAGACCTTATATAGATATTACTATGTTTGCTTCTTCTTTTTTTTCCCTTTCATTTGGAGGCTGTACGTGTTTGATTATTATTATTATTTTGCCTGTATACGCTGTAAGTGCATCGATCTCACAAGATCGATCATCATCAACTTATCCATCCGGATTGAAATATGGTCTATATCTTTCATTTCCATTCTAAGAAATAATTCATGCATGATCGAT]

[+] EMBL CA767365             [GGGGATCACCGCCCTCGCTCCCAGCAGCATGAAGATCAAGGTCGTCGCGCCGCCCGAGAGGAAGTACTCCGTCTGGATCGGAGGCTCCATCCTCGCATCACTCAGCACCTTCCAGCAGATGTGGATTGCCAAGGCTGAGTACGACGAGTCCGGCCCCTCCATCGTTCACCGAAAGTGCTTCTAATTTCTTTTTTTACCTATTAATTAATGATTAATCCTTAATTAAAAAACAACAATAAACTAACTAAGCACCACATAATATATATATGCTACTTATAAGAGTACGTCACCACCACACCGCTCCTCACGTCCAGCTTCCTTTTTCCATTTCTCCCCTATTTTCTTTCTTATACACTACAATTATCCACTCATTTGGAGGTAGACCTTATATAGATATTACTATGTTTGCTTCTTCTTTTTTTTCCCTTTCATTTGGAGGCTGTACGTGTTTGATTATTATTATTATTTTGCCTGTATACGCTGTAAGTGCATCGATCTCACAAGATCGATCATCATCAACTTATCCATCCGGATTGAAATATGGTCTATATCTTTCATTTCCATTCTAAGAAATAATTCATGCATGATCGAT]




>consensus_619#0
GGGGATCACCGCCCTCGCTCCCAGCAGCATGAAGATCAAGGTCGTCGCGCCGCCCGAGAG
GAAGTACTCCGTCTGGATCGGAGGCTCCATCCTCGCATCACTCAGCACCTTCCAGCAGAT
GTGGATTGCCAAGGCTGAGTACGACGAGTCCGGCCCCTCCATCGTTCACCGAAAGTGCTT
CTAATTTCTTTTTTTACCTATTAATTAATGATTAATCCTTAATTAAAAAACAACAATAAA
CTAACTAAGCACCACATAATATATATATGCTACTTATAAGAGTACGTCACCACCACACCG
CTCCTCACGTCCAGCTTCCTTTTTCCATTTCTCCCCTATTTTCTTTCTTATACACTACAA
TTATCCACTCATTTGGAGGTAGACCTTATATAGATATTACTATGTTTGCTTCTTCTTTTT
TTTCCCTTTCATTTGGAGGCTGTACGTGTTTGATTATTATTATTATTTTGCCTGTATACG
CTGTAAGTGCATCGATCTCACAAGATCGATCATCATCAACTTATCCATCCGGATTGAAAT
ATGGTCTATATCTTTCATTTCCATTCTAAGAAATAATTCATGCATGATCGAT

consensusID : consensus_619#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [GTCCAGCTTCCTTTTTCCATTTCTCCCCTATTTTCTTTCTTATACACTACAATTATCCATTCATTTGGAGGTAGACCTTATATAGATATTACTATGTTTGCTTCTTCTTTTTTTTCCCTTTCATTTGGAGGCTGTACGTGTTTGATTATTATTATTATTTTGCCTGTATACGCTGTAAGTGCATCGATCTCACAAGATCGATCATCATCAACTTATCCATCCGGATTGAAATATGGTCTATATCTTTCATTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU165635             [GTCCAGCTTCCTTTTTCCATTTCTCCCCTATTTTCTTTCTTATACACTACAATTATCCATTCATTTGGAGGTAGACCTTATATAGATATTACTATGTTTGCTTCTTCTTTTTTTTCCCTTTCATTTGGAGGCTGTACGTGTTTGATTATTATTATTATTTTGCCTGTATACGCTGTAAGTGCATCGATCTCACAAGATCGATCATCATCAACTTATCCATCCGGATTGAAATATGGTCTATATCTTTCATTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_619#1
GTCCAGCTTCCTTTTTCCATTTCTCCCCTATTTTCTTTCTTATACACTACAATTATCCAT
TCATTTGGAGGTAGACCTTATATAGATATTACTATGTTTGCTTCTTCTTTTTTTTCCCTT
TCATTTGGAGGCTGTACGTGTTTGATTATTATTATTATTTTGCCTGTATACGCTGTAAGT
GCATCGATCTCACAAGATCGATCATCATCAACTTATCCATCCGGATTGAAATATGGTCTA
TATCTTTCATTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_619#0      GGGGATCACCGCCCTCGCTCCCAGCAGCATGAAGATCAAGGTCGTCGCGCCGCCCGAGAG 60
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      GAAGTACTCCGTCTGGATCGGAGGCTCCATCCTCGCATCACTCAGCACCTTCCAGCAGAT 120
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      GTGGATTGCCAAGGCTGAGTACGACGAGTCCGGCCCCTCCATCGTTCACCGAAAGTGCTT 180
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      CTAATTTCTTTTTTTACCTATTAATTAATGATTAATCCTTAATTAAAAAACAACAATAAA 240
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      CTAACTAAGCACCACATAATATATATATGCTACTTATAAGAGTACGTCACCACCACACCG 300
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      CTCCTCACGTCCAGCTTCCTTTTTCCATTTCTCCCCTATTTTCTTTCTTATACACTACAA 360
consensus_619#1      --------GTCCAGCTTCCTTTTTCCATTTCTCCCCTATTTTCTTTCTTATACACTACAA 52
                             ****************************************************

consensus_619#0      TTATCCACTCATTTGGAGGTAGACCTTATATAGATATTACTATGTTTGCTTCTTCTTTTT 420
consensus_619#1      TTATCCATTCATTTGGAGGTAGACCTTATATAGATATTACTATGTTTGCTTCTTCTTTTT 112
                     ******* ****************************************************

consensus_619#0      TTTCCCTTTCATTTGGAGGCTGTACGTGTTTGATTATTATTATTATTTTGCCTGTATACG 480
consensus_619#1      TTTCCCTTTCATTTGGAGGCTGTACGTGTTTGATTATTATTATTATTTTGCCTGTATACG 172
                     ************************************************************

consensus_619#0      CTGTAAGTGCATCGATCTCACAAGATCGATCATCATCAACTTATCCATCCGGATTGAAAT 540
consensus_619#1      CTGTAAGTGCATCGATCTCACAAGATCGATCATCATCAACTTATCCATCCGGATTGAAAT 232
                     ************************************************************

consensus_619#0      ATGGTCTATATCTTTCATTTCCATTCTAAGAAATAATTCATGCATGATCGAT-------- 592
consensus_619#1      ATGGTCTATATCTTTCATTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 292
                     ***********************    ** *** **   *   *  *   *         

consensus_619#0      ---------------------------------------------------
consensus_619#1      AAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 343