These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1427 fasta sequence [AGCAGAATCAATGAGAAGATGAAGGCCCTGCAGAGCCTCATTCCCAACTCCAGCAAGACGGACAAAGCCTCCATGCTTGACGATGCCATCGAGTACCTGAAGCAGCTTCAGCTCCAGGTCCAGGTAAGTGTAATGAATGTTGCATTGTTACTGAATTGCTTGAGGATTATTTTCGCAAATCCACAGACTTAATGCTCCAGGTATCGACAATGGATATGTCAAGCGTTTTGAATATTGAGCAGCTGTGTGCTGAAGTGAAATGGTACTAGCATATATGAGTTAGGACAAGCTTGAAGTTCTAGCATCAAAAAGTGTACATTAGCTATCCTAATCACCATTTTCTGATGGCTTACTGTCTAAGCAAGATTTAGTCGGTTAGGACGTCAGAAAAGAACATTGATCTAATCACAGCATGCCACATTGTTGTTTGCACGGCATTTGTAAGAAAAACAAAATGTATGTATTCCACGTTACTGCAGCTAATTTCTGTTTGATTGCTGAATTTTTGTTCCAGATGTTGTCCATGAGGAATGGTCTATATCTGCCCCCAGTGAACTTATCTGGGGCACCTGAGCATCTGCCGATCCCGCAAATGAGTGCTGCACTTGACCAGAATAGTGCCAAAGCATCAGATCCTTCAGTTGTTTTGCAGCCGGTGAACCAGACTTCAGGAGCACTTCTTCCATTTGAGCTGGCAAGCCAACATAAACCTCTATTCTTACCAGGTGTTCCTAATGCAACCGCTCTGGAGCCTCGGTTCCTTGTAGAGTCTTCGCGTTCCAATCTTCAATCCTTACGGTTCACTGAACCCGCTGAGATGATCTATCCTGATGAGATGATGTTAAAGCACCGCCTGACTTCAGCTAGTGAGAGCACAATTGTGCCAGGAACCGATGAGAAGTCGGTTAGGCAGAACACATACATGATGAATGCTGATCGTTTTGATAGATATGCACTCAGCAAAGACCAGTTGCAGCACATTATGCCGAAAAACACAGAAAGTGTACTTGATATGCCACACTTGCAAAGGTTGCAAACCAGTGACACCAAAGTTAGGGTCGAGGGCAGAATCAAAGTAAACCCATGATCTAATTTCCAATTGGACTTGTGGAGTGCAGAGCAGATCAAAATCGGTGACTGGTGATCATGAGCAGCACCTAATCTAGCATTTTACCTCTAGAACAGTAGTTATATCTTGTTGTGCCATTGTACTCTGGTGTGAAGTGCTTTGTAAAGGGAGATCTATCTATAAGCTGCCAGTAACAATGAACATATCCGATGTTAGGAAATAGGAAAATACCATCAAATCAAATCTATATTGCCAATGTAGGCCGGAATTGGGAGATGTGAGATGCCTGTGGCCACTAATTGAGGCTGCATAGTAAGTCTCCACTGTTTTAAAAAAAATCATTTTTCATACTTAAAGA] [+] EMBL CB674237 [AGCAGAATCAATGAGAAGATGAAGGCCCTGCAGAGCCTCATTCCCAACTCCAGCAAGACGGACAAAGCCTCCATGCTTGACGATGCCATCGAGTACCTGAAGCAGCTTCAGCTCCAGGTCCAGGTAAGTGTAATGAATGTTGCATTGTTACTGAATTGCTTGAGGATTATTTTCGCAAATCCACAGACTTAATGCTCCAGGTATCGACAATGGATATGTCAAGCGTTTTGAATATTGAGCAGCTGTGTGCTGAAGTGAAATGGTACTAGCATATATGAGTTAGGACAAGCTTGAAGTTCTAGCATCAAAAAGTGTACATTAGCTATCCTAATCACCATTTTCTGATGGCTTACTGTCTAAGCAAGATTTAGTCGGTTAGGACGTCAGAAAAGAACATTGATCTAATCACAGCATGCCACATTGTTGTTTGCACGGCATTTGTAAGAAAAACAAAATGTATGTATTCCACGTTACTGCAGCTAATTTCTGTTTGATTGCTGAATTTTTGTTCCAGATGTTGTCCATGAGGAATGGTCTATATCTGCCCCCAGTGAACTTATCTGGGGCACCTGAGCATCTGCCGATCCCGCAAATGAGTGCTGCACTTGACCAGAATAGTGCCAAAGCATCAGATCCTTCAGTTGTTTTGCAGCCGGTGAACCAGACTTCAGGAGCACTTCTTCCATTTGAGCTGGCAAGCCAACATAAACCTCTATTCTTACCAGGTGTTCCTAATGCAACCGCTCTGGAGCCTCGGTTCCTTGTAGAGTCTTCGCGTTCCAATCTTCAATCCTTACGGTTCACTGAACCCGCTGAGATGA ] [-] EMBL CB674238 [ GCCAAAGCATCAGATCCTTCAGTTGTTTTGCAGCCGGTGAACCAGACTTCAGGAGCACTTCTTCCATTTGAGCTGGCAAGCCAACATAAACCTCTATTCTTACCAGGTGTTCCTAATGCAACCGCTCTGGAGCCTCGGTTCCTTGTAGAGTCTTCGCGTTCCAATCTTCAATCCTTACGGTTCACTGAACCCGCTGAGATGATCTATCCTGATGAGATGATGTTAAAGCACCGCCTGACTTCAGCTAGTGAGAGCACAATTGTGCCAGGAACCGATGAGAAGTCGGTTAGGCAGAACACATACATGATGAATGCTGATCGTTTTGATAGATATGCACTCAGCAAAGACCAGTTGCAGCACATTATGCCGAAAAACACAGAAAGTGTACTTGATATGCCACACTTGCAAAGGTTGCAAACCAGTGACACCAAAGTTAGGGTCGAGGGCAGAATCAAAGTAAACCCATGATCTAATTTCCAATTGGACTTGTGGAGTGCAGAGCAGATCAAAATCGGTGACTGGTGATCATGAGCAGCACCTAATCTAGCATTTTACCTCTAGAACAGTAGTTATATCTTGTTGTGCCATTGTACTCTGGTGTGAAGTGCTTTGTAAAGGGAGATCTATCTATAAGCTGCCAGTAACAATGAACATATCCGATGTTAGGAAATAGGAAAATACCATCAAATCAAATCTATATTGCCAATGTAGGCCGGAATTGGGAGATGTGAGATGCCTGTGGCCACTAATTGAGGCTGCATAGTAAGTCTCCACTGTTTTAAAAAAAATCATTTTTCATACTTAAAGA] consensusID : consensus_6192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [ACCTCTCCACCTCACCCCGCGACGCGACGCGACGAGCCGTACACCGACCGCCCCGCGCCGCTGCTGCCGGAGCCGGAGAGAGAAGCTGAAGCCGAAGCAGAGGCAGCCGCAGCGGCAAAACTCAAAAGACGTCGTCAAAAGCTCTGCCGCGCTTGCAGCTTTCTCGGGCTCAAGGAAAAGCCATCACAAAACCAGAGACACAGAGAGAGAGAGAGAGAAACTGAAGAAAGGTGGCAACTCCTGCAGCAGCTGCAGCAGCAAGCGCTAGTGTTTGTGGTTTGCTGGTGCTGTGGCGAGGCGATGATGGATGGGCGAGGAAGCCAGGAGGAGGAGCACCTGGATTTGATCATGCGACACCACGCCAGCATGGGGCTGGATCGCTGCGAGAGCGAGGAGGCGCTGGGGTCGTCGGAGTCGGAGCAGCCCACCAGGCCGGCGCGGCCGCGCGGCAAGAGGAGCCGCGCCGCCGAGGTGTACAACCTCTCCGAGAAGAGGAGGAGGAGCAGAATCAATGAGAAGATGAAGGCCCTGCAGAGCCTCATTCCCAACTCCAGCAAGACGGACAAAGCCTCCATGCTTGACGATGCCATCGAGTACCTGAAGCAGCTTCAGCTCCAGGTCCAGATGTTGTCCATGAGGAATGGTCTATATCTGCCCCCAGTGAACTTATCTGGGGCACCTGAGCATCTGCCGAT] [+] EMBL CB668974 [ACCTCTCCACCTCACCCCGCGACGCGACGCGACGAGCCGTACACCGACCGCCCCGCGCCGCTGCTGCCGGAGCCGGAGAGAGAAGCTGAAGCCGAAGCAGAGGCAGCCGCAGCGGCAAAACTCAAAAGACGTCGTCAAAAGCTCTGCCGCGCTTGCAGCTTTCTCGGGCTCAAGGAAAAGCCATCACAAAACCAGAGACACAGAGAGAGAGAGAGAGAAACTGAAGAAAGGTGGCAACTCCTGCAGCAGCTGCAGCAGCAAGCGCTAGTGTTTGTGGTTTGCTGGTGCTGTGGCGAGGCGATGATGGATGGGCGAGGAAGCCAGGAGGAGGAGCACCTGGATTTGATCATGCGACACCACGCCAGCATGGGGCTGGATCGCTGCGAGAGCGAGGAGGCGCTGGGGTCGTCGGAGTCGGAGCAGCCCACCAGGCCGGCGCGGCCGCGCGGCAAGAGGAGCCGCGCCGCCGAGGTGTACAACCTCTCCGAGAAGAGGAGGAGGAGCAGAATCAATGAGAAGATGAAGGCCCTGCAGAGCCTCATTCCCAACTCCAGCAAGACGGACAAAGCCTCCATGCTTGACGATGCCATCGAGTACCTGAAGCAGCTTCAGCTCCAGGTCCAGATGTTGTCCATGAGGAATGGTCTATATCTGCCCCCAGTGAACTTATCTGGGGCACCTGAGCATCTGCCGAT] consensusID : consensus_6192#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [ATCCTTACGCTTCAATGATCCCGTTGAGATGATCTATCCTGATGAGATGATGTTAAAGCACCCCTTGACTTCAGGTATTGAGAGCACAATTGTGCCAGGAACCGATGAGAAGTCGTTTAGGCAGAACACATACATGACGAATGCTGATTGTTTTGATAGATATGCACTCAGCAAAGACCAGTTGCAGCACATTATGCCGAAAAACACAGAAAGTGTACTTGATATGCCACACTTGCAAAGATTATAAGCTGAGGATTCAGCTTCCAATGTTGGACAGGTTGCAAACCAGTGACACCAAAGTTAGGGTCGAGGGCAGAATCAAAGTAAACCCATGATCTAATTTCCAATTGGACTTGTGGAGTGCAGAGCAGATCAAAATCGGTGAGTGGTGATCATGAGCAGCACCTAATCTAGCATTTTACCTCTAGAACAGTAGTTATATCTTGTTGTGCCATTGTACTCTGGTGTGAAGTGCTTTGTAAAGGGAGATCTATCTATAAGCTGCCAGTAACAATGAACATATCAGATGTTAGGAAATAGGAAAATCCCATCTAATCAAAAAAAGGG] [-] EMBL CB668975 [ATCCTTACGCTTCAATGATCCCGTTGAGATGATCTATCCTGATGAGATGATGTTAAAGCACCCCTTGACTTCAGGTATTGAGAGCACAATTGTGCCAGGAACCGATGAGAAGTCGTTTAGGCAGAACACATACATGACGAATGCTGATTGTTTTGATAGATATGCACTCAGCAAAGACCAGTTGCAGCACATTATGCCGAAAAACACAGAAAGTGTACTTGATATGCCACACTTGCAAAGATTATAAGCTGAGGATTCAGCTTCCAATGTTGGACAGGTTGCAAACCAGTGACACCAAAGTTAGGGTCGAGGGCAGAATCAAAGTAAACCCATGATCTAATTTCCAATTGGACTTGTGGAGTGCAGAGCAGATCAAAATCGGTGAGTGGTGATCATGAGCAGCACCTAATCTAGCATTTTACCTCTAGAACAGTAGTTATATCTTGTTGTGCCATTGTACTCTGGTGTGAAGTGCTTTGTAAAGGGAGATCTATCTATAAGCTGCCAGTAACAATGAACATATCAGATGTTAGGAAATAGGAAAATCCCATCTAATCAAAAAAAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6192#0 AGCAGAATCAATGAGAAGATGAAGGCCCTGCAGAGCCTCATTCCCAACTCCAGCAAGACG 60 consensus_6192#2 ------------------------------------------------------------ consensus_6192#1 ------------------------------------------------------------ consensus_6192#0 GACAAAGCCTCCATGCTTGACGATGCCATCGAGTACCTGAAGCAGCTTCAGCTCCAGGTC 120 consensus_6192#2 ------------------------------------------------------------ consensus_6192#1 ------------------------------------------------------------ consensus_6192#0 CAGGTAAGTGTAATGAATGTTGCATTGTTACTGAATTGCTTGAGGATTATTTTCGCAAAT 180 consensus_6192#2 ------------------------------------------------------------ consensus_6192#1 ------------------------------------------------------------ consensus_6192#0 CCACAGACTTAATGCTCCAGGTATCGACAATGGATATGTCAAGCGTTTTGAATATTGAGC 240 consensus_6192#2 ------------------------------------------------------------ consensus_6192#1 ------------------------------------------------------------ consensus_6192#0 AGCTGTGTGCTGAAGTGAAATGGTACTAGCATATATGAGTTAGGACAAGCTTGAAGTTCT 300 consensus_6192#2 ------------------------------------------------------------ consensus_6192#1 ------------------------------------------------------------ consensus_6192#0 AGCATCAAAAAGTGTACATTAGCTATCCTAATCACCATTTTCTGATGGCTTACTGTCTAA 360 consensus_6192#2 ------------------------------------------------------------ consensus_6192#1 ------------------------------------------------------------ consensus_6192#0 GCAAGATTTAGTCGGTTAGGACGTCAGAAAAGAACATTGATCTAATCACAGCATGCCACA 420 consensus_6192#2 ------------------------------------------------------------ consensus_6192#1 ------------------------------------------------------------ consensus_6192#0 TTGTTGTTTGCACGGCATTTGTAAGAAAAACAAAATGTATGTATTCCACGTTACTGCAGC 480 consensus_6192#2 ------------------------------------------------------------ consensus_6192#1 ------------------------------------------------------------ consensus_6192#0 TAATTTCTGTTTGATTGCTGAATTTTTGTTCCAGATGTTGTCCATGAGGAATGGTCTATA 540 consensus_6192#2 ------------------------------------------------------------ consensus_6192#1 ------------------------------------------------------------ consensus_6192#0 TCTGCCCCCAGTGAACTTATCTGGGGCACCTGAGCATCTGCCGATCCCGCAAATGAGTGC 600 consensus_6192#2 ------------------------------------------------------------ consensus_6192#1 ------------------------------------------------------------ consensus_6192#0 TGCACTTGACCAGAATAGTGCCAAAGCATCAGATCCTTCAGTTGTTTTGCAGCCGGTGAA 660 consensus_6192#2 ------------------------------------------------------------ consensus_6192#1 ------------------------------------------------------------ consensus_6192#0 CCAGACTTCAGGAGCACTTCTTCCATTTGAGCTGGCAAGCCAACATAAACCTCTATTCTT 720 consensus_6192#2 ------------------------------------------------------------ consensus_6192#1 ------------------------------------------------------------ consensus_6192#0 ACCAGGTGTTCCTAATGCAACCGCTCTGGAGCCTCGGTTCCTTGTAGAGTCTTCGCGTTC 780 consensus_6192#2 ------------------------------------------------------------ consensus_6192#1 ----------------ACCTCTCCACCTCACCCCGCGACGCGACGCGACGAGCCGTACAC 44 consensus_6192#0 CAATCTTCAATCCTTACGGTTCACTGAACCCGCTGAGATGATCT--ATCCTGATGAGATG 838 consensus_6192#2 ---------ATCCTTACGCTTCAATGATCCCGTTGAGATGATCT--ATCCTGATGAGATG 49 consensus_6192#1 CGACCGCCCCGCGCCGCTGCT-GCCGGAGCCGGAGAGAGAAGCTGAAGCCGAAGCAGAGG 103 * * * * *** **** * ** * ** * *** * consensus_6192#0 ATGTTAAAGCACCG---CCTGACTTCAGCTAGTGAGAGCACAATTGTGCCAGGAACCGAT 895 consensus_6192#2 ATGTTAAAGCACCC---CTTGACTTCAGGTATTGAGAGCACAATTGTGCCAGGAACCGAT 106 consensus_6192#1 CAGCCGCAGCGGCAAAACTCAAAAGACGTCGTCAAAAGCTCTGCCGCGCTTGCAGCTTTC 163 * *** * * * * * *** * * ** * * * consensus_6192#0 GAGAAGTCGGTTAGGCAGAACACATACATGATGAATGCTGATCGTTTTGATAGATATGCA 955 consensus_6192#2 GAGAAGTCGTTTAGGCAGAACACATACATGACGAATGCTGATTGTTTTGATAGATATGCA 166 consensus_6192#1 TCGGGCTCA---AGGAAAAGCCATCACAAAACCAGAGACACAGAGAGAGAGAGAGAGAAA 220 * ** *** * * * *** * * * ** *** * * consensus_6192#0 CTCAGCAAAGAC--CAGTTGCAGCACATTATGCCGAAAAACACAGAAAGTGTACTTGATA 1013 consensus_6192#2 CTCAGCAAAGAC--CAGTTGCAGCACATTATGCCGAAAAACACAGAAAGTGTACTTGATA 224 consensus_6192#1 CTGAAGAAAGGTGGCAACTCCTGCAGCAGCTGCAGCAGCAAGC-GCTAGTGTTTGTGGTT 279 ** * **** ** * * *** *** * * * * * ***** ** * consensus_6192#0 TGCCACACTTGCAAAG-------------------------------------GTTGCAA 1036 consensus_6192#2 TGCCACACTTGCAAAGATTATAAGCTGAGGATTCAGCTTCCAATGTTGGACAGGTTGCAA 284 consensus_6192#1 TGCTGGTGCTGTGGCGA-----------------------------------GGCGATGA 304 *** ** * * * consensus_6192#0 ACCAGTGACACCAAAGTTAGGGTCGAGGGCAGAATCAAAGTAAACCCATGATCTAATTTC 1096 consensus_6192#2 ACCAGTGACACCAAAGTTAGGGTCGAGGGCAGAATCAAAGTAAACCCATGATCTAATTTC 344 consensus_6192#1 TGGATGGGCGAGGAAGCCAGGAGGAGGAGCACC-TGGATTTGATCATGCGACACCACGCC 363 * * * *** *** * *** * * * * * ** * * consensus_6192#0 CA-ATTGGACTTGTGGAGTGC-AGAGCAGATCAAAATCGGTGACTGGTGATCATGAGCAG 1154 consensus_6192#2 CA-ATTGGACTTGTGGAGTGC-AGAGCAGATCAAAATCGGTGAGTGGTGATCATGAGCAG 402 consensus_6192#1 AGCATGGGGCTGGATCGCTGCGAGAGCGAGGAGGCGCTGGGGTCGTCGGAGTCGGAGCAG 423 ** ** ** * *** ***** ** * ** ****** consensus_6192#0 CAC-CTAATCTAGCATTTTACCTCTAGAACAGTAGTTATATCTTGTTGTGCCATTGTACT 1213 consensus_6192#2 CAC-CTAATCTAGCATTTTACCTCTAGAACAGTAGTTATATCTTGTTGTGCCATTGTACT 461 consensus_6192#1 CCCACCAGGCCGGCGCGGCCGCGCGGCAAGAGGAGCCGCGCC--GCCGAGGTGTACAACC 481 * * * * * ** * * ** ** ** * * * * * ** consensus_6192#0 CTGGTGTGAAGTGCTTTGTAAAGGGAGATCTATCTATAAGCTGCCAGTAACAATGAAC-- 1271 consensus_6192#2 CTGGTGTGAAGTGCTTTGTAAAGGGAGATCTATCTATAAGCTGCCAGTAACAATGAAC-- 519 consensus_6192#1 TCTCCGAGAAGAGG--AGGAGGAGCAGAATCAATGAGAAGATGAAGGCCCTGCAGAGCCT 539 * **** * * * * *** * * *** ** * ** * consensus_6192#0 -ATATCCGATGTTAGGAAATAGGAAAATACCATCAAATCAAATCTATATTGCCAATGTAG 1330 consensus_6192#2 -ATATCAGATGTTAGGAAATAGGAAAATCCCATCTAATCAAAAAAAGGG----------- 567 consensus_6192#1 CATTCCCAACTCCAGCAAGACGGACAAAGCCTCCATGC----------TTGACGATGCCA 589 ** * * ** ** *** ** ** * consensus_6192#0 GCCGGAATTGGGAGATGTGAGATGCCTGTGGCCACTAATTGAGGCTGCATAGTAAGTCTC 1390 consensus_6192#2 ------------------------------------------------------------ consensus_6192#1 TCGAGTACCTGAAGCAGCTTCAGCTCCAGGTCCAGATGTTGTCCATGAGGAATGGTCTAT 649 consensus_6192#0 CACTGTTTTAAAAAAAATCATTTTTCATACTTAAAGA--------- 1427 consensus_6192#2 ---------------------------------------------- consensus_6192#1 ATCTGCCCCCAGTGAACTTATCTGGGGCACCTGAGCATCTGCCGAT 695 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||