These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6198#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 574 fasta sequence [TGTACACCTCGCCGCCACCTCCCTACAGCGGCGGTGGAGGCGGCAGCAGCACCGGCGGTGGAGGCATCTACTACCCCCCGCCCACCGGTGGAGGCGGCGGCGGCGGTGGCGGCTGGCAGCAGGGCGGTGGAGGAGGCGGCGCCTACCCGACACCGCCGCCGCCCAACCCGTTCCTCCCCTACTTCCCATTCTACTACTACAGCCCGCCGCCGCCGTTCTACTCCAGCGGCTCGTCTGTCGCCGGCGTGTCGGCCATTTCGTCGGCGGCGGCGGCGACATTCACGCTGCTCCTCACTGGGCTCCTACTGTGGTGAGAACTGAGAATGGGATAGATCTGCTGAGTTAAACCGATGTTTTTCTTTACA-CTAGGTGGGTAATTTGATTGTGGTTTCTGTAATTTAATTTTTTATTTTTTATTTTTTTTTACTTCTCTCTCTTGGTGATTTATGTATCGATCAGGTATAAGAAAAAATTGCACCCAACTGTAAAACATGGG-CAAGTAATAAG-CA-CCAGTACAGTTGTACTACTACAAATAGATGGATCTGCTGATTAAATTTTTTCGTGCCAAAAAAAA] [+] EMBL AK102492 [TGTACACCTCGCCGCCACCTCCCTACAGCGGCGGTGGAGGCGGCAGCAGCACCGGCGGTGGAGGCATCTACTACCCCCCGCCCACCGGTGGAGGCGGCGGCGGCGGTGGCGGCTGGCAGCAGGGCGGTGGAGGAGGCGGCGCCTACCCGACACCGCCGCCGCCCAACCCGTTCCTCCCCTACTTCCCATTCTACTACTACAGCCCGCCGCCGCCGTTCTACTCCAGCGGCTCGTCTGTCGCCGGCGTGTCGGCCATTTCGTCGGCGGCGGCGGCGACATTCACGCTGCTCCTCACTGGGCTCCTACTGTGGTGAGAACTGAGAATGGGATAGATCTGCTGAGTTAAACCTATGTCTTTCTTTACA CTAGGTGGGTAATTTGATTGTGGTTTCTGTAATTTAATTTTTTATTTTTTA TTTTTTTTACTTCTCTCTCTTGGTGATTTATGTATCGATCAGGTATAAGAAAAAATTGTACCAAACTGTAAAACATGGG CAAGTAATAAG CA CCAGTACAGTTGTACTACTACAAATAGATGGA ] [+] EMBL BI804329 [ TCCCTACA CCGC GTGGA GC GCACAAGCACC GC GTGGAGGCATCTACTACCCCCCGCCCACCGGTGGA GCGGC GC GCCGT GC GCTCGCAGCAGGCCGGTGGAGGA GCGGCGCCTACCCGACACCGCCGCCGCCCAACCCGTTCCTCCCCTACTTCCCATTCTACTACTACAGCCCGCCGCCGCCGTTCTACTCCAGCGGCTCGTCTGTCGCCGGCGTGTCGGCCATTTCGTCGGCGGCGGCGGCGACATTCACGCTGCTCCTCACTGGGCTCCTACTGTGGTGAGAACTGAGAATGGGATAGATCTGCTGAGTTAAACCGATGTTTTTCTTTACA CTAGGTGGGTAATTTGATTGTGGTTTCTGTAATTTAATTTTTTATTTTTTATTTTTTTTTACTTCTCTCTCTTGGTGATTTATGTATCGATCAGGTATAAGAAAAAATTGCACCCAACTGTAAAACATGGG CAAGTAATAAG CACCCAGTACAGTTGTACTACTAC AATAGATGGATCTGCTGATTAAATTTTTTCGTGCCAAAAAAAA] [+] EMBL BI801482 [ TGTC GCCATTTCGTC GCCGC GCGGCGACATTCACGCTGCTCCTCACTGGGCTCCTACTGTGGTGAGAACTGAGAATGGGATAGATCTGCTGAGTTAAACCGATGTTTTTCTTTACACCTAGGTGGGTAATTTGATTGTGGTTTCTGTAATTTAATTTTTTATTTTTTATTTTTTTTTACTTCTCTCTCTTGGTGATTTATGTATCGATCAGGTATAAGAAAAAATTGCACCCAACTGTAAAACATGGGCCAAGTAATAAGCCC CCAGTACCGTTGTACTACTACCAAaaaaaaaa ] consensusID : consensus_6198#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence [TGTACGCCTCGCCGCCACCTCCCTACAGCGGCGGTGGAGGCGGCAGCAGCACCGGCGGTGGAGGCATCTACTACCCCCCGCCCACCGGTGAGGGCGGCGGNNGNNGNNGCNGNTGGCANCANGGCGGGGGAGGAGGNGGNNNNNTNNNCCGACCCGNCGNCNGGCCNNCCCCGNNCCNCCCTCCTTTTCCNNTCNCTTNCTCCNGCCCGCCCGCCGGCGTTTTTTCTTCTGCGGTTNGTTTGGTTCCGGGCTT] [+] EMBL CA758479 [TGTACGCCTCGCCGCCACCTCCCTACAGCGGCGGTGGAGGCGGCAGCAGCACCGGCGGTGGAGGCATCTACTACCCCCCGCCCACCGGTGAGGGCGGCGGNNGNNGNNGCNGNTGGCANCANGGCGGGGGAGGAGGNGGNNNNNTNNNCCGACCCGNCGNCNGGCCNNCCCCGNNCCNCCCTCCTTTTCCNNTCNCTTNCTCCNGCCCGCCCGCCGGCGTTTTTTCTTCTGCGGTTNGTTTGGTTCCGGGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6198#0 TGTACACCTCGCCGCCACCTCCCTACAGCGGCGGTGGAGGCGGCAGCAGCACCGGCGGTG 60 consensus_6198#1 TGTACGCCTCGCCGCCACCTCCCTACAGCGGCGGTGGAGGCGGCAGCAGCACCGGCGGTG 60 ***** ****************************************************** consensus_6198#0 GAGGCATCTACTACCCCCCGCCCACCGGTGGAGGCGGCGGCGGCGGTGGCGGCTGGCAGC 120 consensus_6198#1 GAGGCATCTACTACCCCCCGCCCACCGGTGAGGGCGGCGGNNGNNGNNGCNGNTGGCANC 120 ****************************** ******** * * ** * ***** * consensus_6198#0 AGGGCGGTGGAGGAGGCGGCGCCT--ACCCGACACCGCCGCCGCCCAACCC-GTTCCTCC 177 consensus_6198#1 ANGGCGGGGGAGGAGGNGGNNNNNTNNNCCGACCCGNCGNCNGGCCNNCCCCGNNCCNCC 180 * ***** ******** ** ***** * * * * ** *** * ** ** consensus_6198#0 CCTACTTCCCATTCTACTACTACAGCCCGCC-GCCGCCGTTCTA-CTCCAGCGGCTCGTC 235 consensus_6198#1 CTCCTTTTCCNNTCNCTTNCTCCNGCCCGCCCGCCGGCGTTTTTTCTTCTGCGGTTNGTT 240 * ** ** ** * ** * ******* **** **** * ** * **** * ** consensus_6198#0 TGTCGCCGGCGTGTCGGCCATTTCGTCGGCGGCGGCGGCGACATTCACGCTGCTCCTCAC 295 consensus_6198#1 TGGTTCCGGGCTT----------------------------------------------- 253 ** **** * consensus_6198#0 TGGGCTCCTACTGTGGTGAGAACTGAGAATGGGATAGATCTGCTGAGTTAAACCGATGTT 355 consensus_6198#1 ------------------------------------------------------------ consensus_6198#0 TTTCTTTACACTAGGTGGGTAATTTGATTGTGGTTTCTGTAATTTAATTTTTTATTTTTT 415 consensus_6198#1 ------------------------------------------------------------ consensus_6198#0 ATTTTTTTTTACTTCTCTCTCTTGGTGATTTATGTATCGATCAGGTATAAGAAAAAATTG 475 consensus_6198#1 ------------------------------------------------------------ consensus_6198#0 CACCCAACTGTAAAACATGGGCAAGTAATAAGCACCAGTACAGTTGTACTACTACAAATA 535 consensus_6198#1 ------------------------------------------------------------ consensus_6198#0 GATGGATCTGCTGATTAAATTTTTTCGTGCCAAAAAAAA 574 consensus_6198#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||