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Oryza sativa
cluster # 6199 cluster # 6199       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6199#0 length = 1946 sequences # 4  

consensusID : consensus_6199#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1946
fasta sequence
                              [AATCTGGTCAAACTCGTCCTCCTCTCTCATCTCCCTCCCCGTCTCGCCGGCGGAGGTAGGCTTCGCCCTCTCGCGGCCTCGCGTGCGCGTCGCCGGCGAGAGGGCCGCCCGTAGGCACGGCGCCGACGGCCTCGATCCTTCCCTATCCACGCGCTCTGCGTGGCATCCTCGTCGAGGTCCCGGAGGGGTTGACCCTGCCAAGCTGCGGCGCGCGCGCGGCCTGTTCGACGGAATGCGCCACTGAGAGACTCCCAGCGTGAGCCGCCCATTCCGAGACAAGAATGGCCGCTGGGGTGGCTGGAGCGAGGGGCGCAGGTCGCCCGCTCATGCGGCTGGTCACCATGAGCGGCGTGCCGATCCTGCGGCAGCTGCACCTGGAGGAACGGCTGCTGCGCCGTACCGGGGATAACTGGTGCATCATCAACGACGGCACGGCTCCTGCCACCATCGTCATGGGCGTGTCAGGGAGAGTTTCGGAGCTTGTCGAGATTGAGCCGGTCCTCCGGGATAAAGTTCCGGTTATAAGGAGGTTCAGTGGTGGTGGCACAGTCATCGTCGATCAGGGGACAGTGTTTGCCACATTCATATGCAGCAAGACCGCCATTCCTGGACTGCAGCCATTTCCGCGGGATATCATGTCTTGGACTGGTCAGTTGTATGACAAGGTGTTTGATGGTTTCGGTGAATTTCATCTGCGTGAGAATGATTATGCCTTTAGTCAAAGGAAGTTTGGAGGAAATGCTCAATCCATTACAAGAGATCGTTGGGTTCATCATACATCATTCTTATGGGATTATGATATGAAGAATATGGATTATCTCAAAATCCCAAAACGTGCACCTGATTATCGACTGGCGAGGAACCACACAGATTTCTTGTGTCGCATGAAGGAGTATATGCCATCACGATCCGTTTTCACCGAAGGGATCATCTCTGCCCTCGGAGACCACTTCACAGTCGAACCCACAGAACCAGAGGCAGTGCTCTCTGATGACACAGGGTTTAAGCCTTCCACGAAGCTGTTATCGCCACAAGACCTAGAGGATGTTATCGCCTCAAAAGAATCACTCAAGGTACAGGAAGTCGAAGCATGACAACAGCTGTGAAGATGACTTCTTTTCTCATGATCATGCCTGACAAGCGGTACCATCGAACAGTGAATAAAATCAACCTTCCAGTTTGGACGGCGTTGTGCTCACTGAAAATTTGGCACCGAAGGACACAACCACAGCTTCCTTGAAGCGGACTTCCGCATCTAAAGCATCATTGCTCAAACAGCTAATTGTTATTCA-TTCCGGTTTCGGAATC-TTTTTTACTGGAATAATCAGCTGGAGAACACAAATGTTCCTTCGCTAACGCCATCCTCATCTCTTATAAGTTCTAACCACACTCTTTTTGACCTGTGTTAACCTGTTCTTCATTCCTCAACCATAGTATGTGATATGTCCAGAGCAGTCAAGCAGAAGCTCTCCTTGTCACCACCACCAGCCAGTGCCCAGTAACCCAAAGTGGCAGGCAGCCTGAGTGATCCCCTGCTCCAAATTATTCCCCTCTGCCAATCCTAAGCAGATCGAGCTGATCACAGTCATGGATCGACCAGCCAGGGCGGCCGGCCGTGTGGCTGCTCTGCTTGATCTGGATAGGCTCCGGGGGAGGAGAAAGACTGAGAGAGAATAGTAGCTTGTACTGTTACTTGCGTGTGCCCCCACAAACCTGCAGGATCACACGGGGGGAGCGAGGGGGCGTGTGATGGATGGATGGATGCGGGATGGAGGAGGTCGCCATGGATAACGGACAAAAGGCCATCGCGTCATGCACGAACGCGGCCACAGTGCCCCGTGCACGGACACTCGGCGCGTACCGTCGCCAGGGCGGGCGCGGCCGTACGCCGACCGGAGCAGAGACCGGATGATGATATGATTTGGTGTTTGATAGTAGGTGGCAGC]

[+] EMBL AK121712             [AATCTGGTCAAACTCGTCCTCCTCTCTCATCTCCCTCCCCGTCTCGCCGGCGGAGGTAGGCTTCGCCCTCTCGCGGCCTCGCGTGCGCGTCGCCGGCGAGAGGGCCGCCCGTAGGCACGGCGCCGACGGCCTCGATCCTTCCCTATCCACGCGCTCTGCGTGGCATCCTCGTCGAGGTCCCGGAGGGGTTGACCCTGCCAAGCTGCGGCGCGCGCGCGGCCTGTTCGACGGAATGCGCCACTGAGAGACTCCCAGCGTGAGCCGCCCATTCCGAGACAAGAATGGCCGCTGGGGTGGCTGGAGCGAGGGGCGCAGGTCGCCCGCTCATGCGGCTGGTCACCATGAGCGGCGTGCCGATCCTGCGGCAGCTGCACCTGGAGGAACGGCTGCTGCGCCGTACCGGGGATAACTGGTGCATCATCAACGACGGCACGGCTCCTGCCACCATCGTCATGGGCGTGTCAGGGAGAGTTTCGGAGCTTGTCGAGATTGAGCCGGTCCTCCGGGATAAAGTTCCGGTTATAAGGAGGTTCAGTGGTGGTGGCACAGTCATCGTCGATCAGGGGACAGTGTTTGCCACATTCATATGCAGCAAGACCGCCATTCCTGGACTGCAGCCATTTCCGCGGGATATCATGTCTTGGACTGGTCAGTTGTATGACAAGGTGTTTGATGGTTTCGGTGAATTTCATCTGCGTGAGAATGATTATGCCTTTAGTCAAAGGAAGTTTGGAGGAAATGCTCAATCCATTACAAGAGATCGTTGGGTTCATCATACATCATTCTTATGGGATTATGATATGAAGAATATGGATTATCTCAAAATCCCAAAACGTGCACCTGATTATCGACTGGCGAGGAACCACACAGATTTCTTGTGTCGCATGAAGGAGTATATGCCATCACGATCCGTTTTCACCGAAGGGATCATCTCTGCCCTCGGAGACCACTTCACAGTCGAACCCACAGAACCAGAGGCAGTGCTCTCTGATGACACAGGGTTTAAGCCTTCCACGAAGCTGTTATCGCCACAAGACCTAGAGGATGTTATCGCCTCAAAAGAATCACTCAAGGTACAGGAAGTCGAAGCATGACAACAGCTGTGAAGATGACTTCTTTTCTCATGATCATGCCTGACAAGCGGTACCATCGAACAGTGAATAAAATCAACCTTCCAGTTTGGACGGCGTTGTGCTCACTGAAAATTTGGCACCGAAGGACACAACCACAGCTTCCTTGAAGCGGACTTCCGCATCTAAAGCATCATTGCTCAAACAGCTAATTGTTATTCA TTCCGGTTTCGGAATC TTTTTTACTGGAATAATCAGCTGGAGAACACAAATGTTCCTTCGCTAACGCCATCCTCATCTCTTATAAGTTCTAACCACACTCTTTTTGACCTGTGTTAACCTGTTCTTCATTCCTCAACCATAGTATGTGATATGTCCAGAGCAGTCAAGCAGAAGCTCTCCTTGTCACCACCACCAGCCAGTGCCCAGTAACCCAAAGTGGCAGGCAGCCTGAGTGATCCCCTGCTCCAAATTATTCCCCTCTGCCAATCCTAAGCAGATCGAGCTGATCACAGTCATGGATCGACCAGCCAGGGCGGCCGGCCGTGTGGCTGCTCTGCTTGATCTGGATAGGCTCCGGGGGAGGAGAAAGACTGAGAGAGAATAGTAGCTTGTACTGTTACTTGCGTGTGCCCCCACAAACCTGCAGGATCACACGGGGGGAGCGAGGGGGCGTGTGATGGATGGATGGATGCGGGATGGAGGAGGTCGCCATGGATAACGGACAAAAGGCCATCGCGTCATGCACGAACGCGGCCACAGTGCCCCGTGCACGGACACTCGGCGCGTACCGTCGCCAGGGCGGGCGCGGCCGTACGCCGACCGGAGCAGAGACCGGATGATGATATGATTTGGTGTTTGATAGTAGGTGGCAGC]
[+] EMBL CB663212             [               GTCCTCCTCTCTCATCTCCCTCCCCGTCTCGCCGGCGGAGGTAGGCTTCGCCCTCTCGCGGCCTCGCGTGCGCGTCGCCGGCGAGAGGGCCGCCCGTAGGCACGGCGCCGACGGCCTCGATCCTTCCCTATCCACGCGCTCTGCGTGGCATCCTCGTCGAGGTCCCGGAGGGGTTGACCCTGCCAAGCTGCGGCGCGCGCGCGGCCTGTTCGACGGAATGCGCCACTGAGAGACTCCCAGCGTGAGCCGCCCATTCCGAGACAAGAATGGCCGCTGGGGTGGCTGGAGCGAGGGGCGCAGGTCGCCCGCTCATGCGGCTGGTCACCATGAGCGGCGTGCCGATCCTGCGGCAGCTGCACCTGGAGGAACGGCTGCTGCGCCGTACCGGGGATAACTGGTGCATCATCAACGACGGCACGGCTCCTGCCACCATCGTCATGGGCGTGTCAGGGAGAGTTTCGGAGCTTGTCGAGATTGAGCCGGTCCTCCGGGATAAAGTTCCGGTTATAAGGAGGTTCAGTGGTGGTGGCACAGTCATCGTCGATCAGGGGACAGTGTTTGCCACATTCATATGCAGCAAGACCGCCATTCCTGGACTGCAGCCATTTCCGCGGGATATCATGTCTTGGACTGGTCAGTTGTATGACAAGGTGTTTGATGGTTTCGGTGAATTTCATCTGCGTGAGAATGATTATGCCTTTAGTCAAAGGAAGTTTGGAGGAAATGCTCAATCCATTACAAGAGATCGTTGGGTTCATCATACATCATTCTTATGGGATTATGATATGAAGAATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB635283             [                                                                                                                                                                             cAGG CCTAGAAGGGTTGACCCTGCCAAGCTGCGGCGCGCGCGCGGCCTGTTCGACGGAATGCGCCACTGAGAGACTCCCAGCGTGAGCCGCCCATTCCGAGACAAGAATGGCCGCTGGGGTGGCTGGAGCGAGGGGCGCAGGTCGCCCGCTCATGCGGCTGGTCACCATGAGCGGCGTGCCGATCCTGCGGCAGCTGCACCTGGAGGAACGGCTGCTGCGCCGTACCGGGGATAACTGGTGCATCATCAACGACGGCACGGCTCCTGCCACCATCGTCATGGGCGTGTCAGGGAGAGTTTCGGAGCTTGTCGAGATTGAGCCGGTCCTCCGGGATAAAGTTCCGGTTATAAGGAGGTTCAGTGGTGGTGGCACAGTCATCGTCGATCAGGGGACAGTGTTTGCCACATTCATATGCAGCAAGACCGCCATTCCTGGACTGCAGCCATTTCCGCGGGATATCATGTCTTGGACTGGTCAGTTGTATGACAAGGTGTTTGATGGTTTCGGTGAATTTCATCTGCGTGAGAATGATTATGCCTTTAGTCAAAGGAAGTTTGGAGGAAATGCTCAATCCATTACAAGAGATCGTTGGGTTCATCATACATCATTCTTATGGGATTATGATATGAAGAATATGGATTATCTCAAAATCCCAAAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA766275             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGCCACATTCGTATGCAGCAAGACCGCCATTCCTGGACTGCAGCCATTTCCGCGGGATATCATGTCTTGGACTGGTCAGTTGTATGACAAGGTGTTTGATGGTTTCGGTGAATTTCATCTGCGTGAGAATGATTATGCCTTTAGTCAAAGGAAGTTTGGAGGAAATGCTCAATCCATTACAAGAGATCGTTGGGTTCATCATACATCATTCTTATGGGATTATGATATGAAGAATATGGATTATCTCAAAATCCCAAAACGTGCACCTGATTATCGACTGGCGAGGAACCACACAGATTTCTTGTGTCGCATGAAGGAGTATATGCCATCACGATCCGTTTTCACCGAAGGGATCATCTCTGCCCTCGGAGACCACTTCACAGTCGAACCCACAGAACCAGAGGCAGTGCTCTCTGATGACACAGGGTTTAAGCCTTCCACGAAGCTGTTATCGCCACAAGAACTAGAGGATGTTATCGCCTCAAAAGAATCACTCAAGGTACAGGAAGTCGAAGCATGACAACAGCTGTGAAGATGACTTCTTTTCTCATGATCATGCCTGACAAGCGGTACCATCGAACAGTGAATAAAATCAACCTTCCAGTTTGGACGGCGTTGTGCTCACTGAAAATTTGGCACCGAAGGACACAACCACAGCTTNCTTGAAGCGGACTTNCGCATCTAAAGCATCATTGCTCAAACAGCTAATTGGTATTCATTTCCGGTTTCGGAATCTTTTTTTACTGGAATAATCAGCTGGAGAACACAGATGc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]


>consensus_6199#0 AATCTGGTCAAACTCGTCCTCCTCTCTCATCTCCCTCCCCGTCTCGCCGGCGGAGGTAGG CTTCGCCCTCTCGCGGCCTCGCGTGCGCGTCGCCGGCGAGAGGGCCGCCCGTAGGCACGG CGCCGACGGCCTCGATCCTTCCCTATCCACGCGCTCTGCGTGGCATCCTCGTCGAGGTCC CGGAGGGGTTGACCCTGCCAAGCTGCGGCGCGCGCGCGGCCTGTTCGACGGAATGCGCCA CTGAGAGACTCCCAGCGTGAGCCGCCCATTCCGAGACAAGAATGGCCGCTGGGGTGGCTG GAGCGAGGGGCGCAGGTCGCCCGCTCATGCGGCTGGTCACCATGAGCGGCGTGCCGATCC TGCGGCAGCTGCACCTGGAGGAACGGCTGCTGCGCCGTACCGGGGATAACTGGTGCATCA TCAACGACGGCACGGCTCCTGCCACCATCGTCATGGGCGTGTCAGGGAGAGTTTCGGAGC TTGTCGAGATTGAGCCGGTCCTCCGGGATAAAGTTCCGGTTATAAGGAGGTTCAGTGGTG GTGGCACAGTCATCGTCGATCAGGGGACAGTGTTTGCCACATTCATATGCAGCAAGACCG CCATTCCTGGACTGCAGCCATTTCCGCGGGATATCATGTCTTGGACTGGTCAGTTGTATG ACAAGGTGTTTGATGGTTTCGGTGAATTTCATCTGCGTGAGAATGATTATGCCTTTAGTC AAAGGAAGTTTGGAGGAAATGCTCAATCCATTACAAGAGATCGTTGGGTTCATCATACAT CATTCTTATGGGATTATGATATGAAGAATATGGATTATCTCAAAATCCCAAAACGTGCAC CTGATTATCGACTGGCGAGGAACCACACAGATTTCTTGTGTCGCATGAAGGAGTATATGC CATCACGATCCGTTTTCACCGAAGGGATCATCTCTGCCCTCGGAGACCACTTCACAGTCG AACCCACAGAACCAGAGGCAGTGCTCTCTGATGACACAGGGTTTAAGCCTTCCACGAAGC TGTTATCGCCACAAGACCTAGAGGATGTTATCGCCTCAAAAGAATCACTCAAGGTACAGG AAGTCGAAGCATGACAACAGCTGTGAAGATGACTTCTTTTCTCATGATCATGCCTGACAA GCGGTACCATCGAACAGTGAATAAAATCAACCTTCCAGTTTGGACGGCGTTGTGCTCACT GAAAATTTGGCACCGAAGGACACAACCACAGCTTCCTTGAAGCGGACTTCCGCATCTAAA GCATCATTGCTCAAACAGCTAATTGTTATTCATTCCGGTTTCGGAATCTTTTTTACTGGA ATAATCAGCTGGAGAACACAAATGTTCCTTCGCTAACGCCATCCTCATCTCTTATAAGTT CTAACCACACTCTTTTTGACCTGTGTTAACCTGTTCTTCATTCCTCAACCATAGTATGTG ATATGTCCAGAGCAGTCAAGCAGAAGCTCTCCTTGTCACCACCACCAGCCAGTGCCCAGT AACCCAAAGTGGCAGGCAGCCTGAGTGATCCCCTGCTCCAAATTATTCCCCTCTGCCAAT CCTAAGCAGATCGAGCTGATCACAGTCATGGATCGACCAGCCAGGGCGGCCGGCCGTGTG GCTGCTCTGCTTGATCTGGATAGGCTCCGGGGGAGGAGAAAGACTGAGAGAGAATAGTAG CTTGTACTGTTACTTGCGTGTGCCCCCACAAACCTGCAGGATCACACGGGGGGAGCGAGG GGGCGTGTGATGGATGGATGGATGCGGGATGGAGGAGGTCGCCATGGATAACGGACAAAA GGCCATCGCGTCATGCACGAACGCGGCCACAGTGCCCCGTGCACGGACACTCGGCGCGTA CCGTCGCCAGGGCGGGCGCGGCCGTACGCCGACCGGAGCAGAGACCGGATGATGATATGA TTTGGTGTTTGATAGTAGGTGGCAGC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)