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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_62#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1201 fasta sequence
[CAGCAAAAGCCCATTATTAACGGGACGCACGCGCGCGCGCGCAGGGGACAAGTCGAGGGAGAGCTAGCTAGCTTAGCTTGCTTGGTTGCTTTGGAGGTGTGGCTTGCCATGGCGAGAGCGTTCCGCGCGGCCTCGCCGCTGCCGCTGCCGTCCTCCAGCTCCAGGGCGGCCGCGGCGAGCGGTGGCACCGGCGGAGGCGGAGGCGGGAACTTCCCGTGGCTGAGCAGGAAGCGGCTGGGCGCCAAGCCGCCGTCGCCGCAGCGGCGAGGTGGACAGGAGAGGGAGGGAGGTGGAGATGAGGCGGCGGGGATGGGGACGACGACGGGCCGCGCGGTTCTCCGCGACGTCGTCCGCGGAGCCTGCTGAGGTGCAGTCGTCGTCGTCGTCGAGGAAGCGCGCGGACGCGCTGGCGAGGCTGCGGGCGGCGTTCCTGGCGGCGATCACGCACCGGCGGCGGCGGCGGCAGCTGGGGTCGAGCCTGACGGGCACCATCTTCGGGCGGCGCCGCGGCCGCGTTCACGTCGCGCTGCAGACGGACACCCGCTCGCCGCCGGTGCTGCTGGTGGAGATGGCCGCCTACTCCACCGGCGCGCTCGTCAGGGAGATGTCCTCCGGCCTCGTCCGCCTCGCGCTCGAGTGCGAGAAGCAACCAATCAACCCAGGCGAGAAGCGGCGGGCGCTGCTGGAGGAGCCGACGTGGCGGGCCTACTGCAACGGCCGAAAGTGCGGCTTCGCGGTGCGCAGGGAGTGCGGCGCCGACGAGTGGAGGGTTCTTGGCGCCGTCGAGCCGGTGTCCGTCGGCGCCGGCGTTCTCCCCGACGACGCCGCCGCCGCCGCCGCCGCCGAGGAGGGCGACCTGATGTACATGCGCGCGAGGTTCGAGCGGGTGGTCGGGTCGAGGGACTCGGAGGCGTTCTACATGATGAACCCTGACGGCAGCGGAGGCCCGGAGCTCAGCATCTACCTGCTCAGAGTCTGACCATGGATCATACTATCATGGAGCAAAATCGAAAAGAAAAAATGAGAGAAGAAATCATCTTGATGTTTGCAATTAATTGTACGTAATCCATCCATCCATGCATGCATAGTTTGGCTTGTGTTAATTACTTTCTTGGGTTTCATGTAATTTGAAGGGTGTCAAGGTGTGTACAGTATTACTGATCACTTGGGGGGGGCTTAATATATCAATCTGGTAAACATT]
[+] EMBL AK101923 [CAGCAAAAGCCCATTATTAACGGGACGCACGCGCGCGCGCGCAGGGGACAAGTCGAGGGAGAGCTAGCTAGCTTAGCTTGCTTGGTTGCTTTGGAGGTGTGGCTTGCCATGGCGAGAGCGTTCCGCGCGGCCTCGCCGCTGCCGCTGCCGTCCTCCAGCTCCAGGGCGGCCGCGGCGAGCGGTGGCACCGGCGGAGGCGGAGGCGGGAACTTCCCGTGGCTGAGCAGGAAGCGGCTGGGCGCCAAGCCGCCGTCGCCGCAGCGGCGAGGTGGACAGGAGAGGGAGGGAGGTGGAGATGAGGCGGCGGGGATGGGGACGACGACGGGCCGCGCGGTTCTCCGCGACGTCGTCCGCGGAGCCTGCTGAGGTGCAGTCGTCGTCGTCGTCGAGGAAGCGCGCGGACGCGCTGGCGAGGCTGCGGGCGGCGTTCCTGGCGGCGATCACGCACCGGCGGCGGCGGCGGCAGCTGGGGTCGAGCCTGACGGGCACCATCTTCGGGCGGCGCCGCGGCCGCGTTCACGTCGCGCTGCAGACGGACACCCGCTCGCCGCCGGTGCTGCTGGTGGAGATGGCCGCCTACTCCACCGGCGCGCTCGTCAGGGAGATGTCCTCCGGCCTCGTCCGCCTCGCGCTCGAGTGCGAGAAGCAACCAATCAACCCAGGCGAGAAGCGGCGGGCGCTGCTGGAGGAGCCGACGTGGCGGGCCTACTGCAACGGCCGAAAGTGCGGCTTCGCGGTGCGCAGGGAGTGCGGCGCCGACGAGTGGAGGGTTCTTGGCGCCGTCGAGCCGGTGTCCGTCGGCGCCGGCGTTCTCCCCGACGACGCCGCCGCCGCCGCCGCCGCCGAGGAGGGCGACCTGATGTACATGCGCGCGAGGTTCGAGCGGGTGGTCGGGTCGAGGGACTCGGAGGCGTTCTACATGATGAACCCTGACGGCAGCGGAGGCCCGGAGCTCAGCATCTACCTGCTCAGAGTCTGACCATGGATCATACTATCATGGAGCAAAATCGAAAAGAAAAAATGAGAGAAGAAATCATCTTGATGTTTGCAATTAATTGTACGTAATCCATCCATCCATGCATGCATAGTTTGGCTTGTGTTAATTACTTTCTTGGGTTTCATGTAATTTGAAGGGTGTCAAGGTGTGTACAGTATTACTGATCACTTGGGGGGGGCTTAATATATCAATCTGGTAAACATT]
consensusID : consensus_62#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1150 fasta sequence
[AGCAAAAGCCCATTATTAACGGGACGCACGCGCGCGCGCGCAGGGGACAAGTCGAGGGAGAGCTAGCTAGTTTAGCTTGCTTGGTTGCTTTGGAGGTGTGGCTTGCCATGGCGAGAGCGTTCCGCGCGGCCTCGCCGCTGCCGCTGCCGTCCTCCAGCTCCAGGGCGGCCGCGGCGAGCGGTGGCACCGGCGGAGGCGGAGGCGGGAACTTCCCGTGGCTGAGCAGGAAGCGGCTGGGCGCCAAGCCGCCGTCGCCGCAGCGGCGAGGTGGACAGGAGAGGGAGGGAGGTGGAGATGAGGCGGCGGGGATGGGGACGACGACGAGGGCCGCGCGGTTCTCCGCGACGTCGTCCGCGGAGCCTGCTGAGGTGCAGTCGTCGTCGTCGTCGAGGAAGCGCGCGGACGCGCTGGCGAGGCTGCGGGCGGCGTTCCTGGCGGAGATGGCCGCCTACTCCACCGGCGCGCTCGTCAGGGAGATGTCCTCCGGCCTCGTCCGCCTCGCGCTCGAGTGCGAGAAGCAACCAATCAACCCAGGCGAGAAGCGGCGGGCGCTGCTGGAGGAGCCGACGTGGCGGGCCTACTGCAACGGCCGAAAGTGCGGCTTCGCGGTGCGCAGGGAGTGCGGCGCCGACGAGTGGAGGGTTCTTGGCGCCGTCGAGCCGGTGTCCGTCGGCGCCGGCGTTCTCCCCGACGACGCCGCCGCCGCCGCCGCCGCCGAGGAGGGCGACCTGATGTACATGCGCGCGAGGTTCGAGCGGGTGGTCGGGTCGAGGGACTCGGAGGCGTTCTACATGATGAACCCTGACGGCAGCGGCGGCCCGGAGCTCAGCATCTACCTGCTCAGAGTCTGACCATGGATCATACTATCATGGAGCAAAATCGAAAAGAAAAAATGAGAGAAGAAATCATCTTGATGTTTGCAATTAATTGTACGTAATCCATCCATCCATGCATGCATAGTTTGGCTTGTGTTAATTACTTTCTTGGGTTTCATGTAATTTGAAGGGTGTCAAGGTGTGTACAGTATTACTGATCACTTGGGGGGGGCTTAATATATCAATCTGGTAAACATTGGTGTGATGCACTGATGCTGCTGTACTATCTGTTTGTGAGACATTTCACGTCTGTGTGCTTCAGGACTAATTCATAA]
[+] EMBL AK063563 [AGCAAAAGCCCATTATTAACGGGACGCACGCGCGCGCGCGCAGGGGACAAGTCGAGGGAGAGCTAGCTAGTTTAGCTTGCTTGGTTGCTTTGGAGGTGTGGCTTGCCATGGCGAGAGCGTTCCGCGCGGCCTCGCCGCTGCCGCTGCCGTCCTCCAGCTCCAGGGCGGCCGCGGCGAGCGGTGGCACCGGCGGAGGCGGAGGCGGGAACTTCCCGTGGCTGAGCAGGAAGCGGCTGGGCGCCAAGCCGCCGTCGCCGCAGCGGCGAGGTGGACAGGAGAGGGAGGGAGGTGGAGATGAGGCGGCGGGGATGGGGACGACGACGAGGGCCGCGCGGTTCTCCGCGACGTCGTCCGCGGAGCCTGCTGAGGTGCAGTCGTCGTCGTCGTCGAGGAAGCGCGCGGACGCGCTGGCGAGGCTGCGGGCGGCGTTCCTGGCGGAGATGGCCGCCTACTCCACCGGCGCGCTCGTCAGGGAGATGTCCTCCGGCCTCGTCCGCCTCGCGCTCGAGTGCGAGAAGCAACCAATCAACCCAGGCGAGAAGCGGCGGGCGCTGCTGGAGGAGCCGACGTGGCGGGCCTACTGCAACGGCCGAAAGTGCGGCTTCGCGGTGCGCAGGGAGTGCGGCGCCGACGAGTGGAGGGTTCTTGGCGCCGTCGAGCCGGTGTCCGTCGGCGCCGGCGTTCTCCCCGACGACGCCGCCGCCGCCGCCGCCGCCGAGGAGGGCGACCTGATGTACATGCGCGCGAGGTTCGAGCGGGTGGTCGGGTCGAGGGACTCGGAGGCGTTCTACATGATGAACCCTGACGGCAGCGGCGGCCCGGAGCTCAGCATCTACCTGCTCAGAGTCTGACCATGGATCATACTATCATGGAGCAAAATCGAAAAGAAAAAATGAGAGAAGAAATCATCTTGATGTTTGCAATTAATTGTACGTAATCCATCCATCCATGCATGCATAGTTTGGCTTGTGTTAATTACTTTCTTGGGTTTCATGTAATTTGAAGGGTGTCAAGGTGTGTACAGTATTACTGATCACTTGGGGGGGGCTTAATATATCAATCTGGTAAACATTGGTGTGATGCACTGATGCTGCTGTACTATCTGTTTGTGAGACATTTCACGTCTGTGTGCTTCAGGACTAATTCATAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_62#0 CAGCAAAAGCCCATTATTAACGGGACGCACGCGCGCGCGCGCAGGGGACAAGTCGAGGGA 60
consensus_62#1 -AGCAAAAGCCCATTATTAACGGGACGCACGCGCGCGCGCGCAGGGGACAAGTCGAGGGA 59
***********************************************************
consensus_62#0 GAGCTAGCTAGCTTAGCTTGCTTGGTTGCTTTGGAGGTGTGGCTTGCCATGGCGAGAGCG 120
consensus_62#1 GAGCTAGCTAGTTTAGCTTGCTTGGTTGCTTTGGAGGTGTGGCTTGCCATGGCGAGAGCG 119
*********** ************************************************
consensus_62#0 TTCCGCGCGGCCTCGCCGCTGCCGCTGCCGTCCTCCAGCTCCAGGGCGGCCGCGGCGAGC 180
consensus_62#1 TTCCGCGCGGCCTCGCCGCTGCCGCTGCCGTCCTCCAGCTCCAGGGCGGCCGCGGCGAGC 179
************************************************************
consensus_62#0 GGTGGCACCGGCGGAGGCGGAGGCGGGAACTTCCCGTGGCTGAGCAGGAAGCGGCTGGGC 240
consensus_62#1 GGTGGCACCGGCGGAGGCGGAGGCGGGAACTTCCCGTGGCTGAGCAGGAAGCGGCTGGGC 239
************************************************************
consensus_62#0 GCCAAGCCGCCGTCGCCGCAGCGGCGAGGTGGACAGGAGAGGGAGGGAGGTGGAGATGAG 300
consensus_62#1 GCCAAGCCGCCGTCGCCGCAGCGGCGAGGTGGACAGGAGAGGGAGGGAGGTGGAGATGAG 299
************************************************************
consensus_62#0 GCGGCGGGGATGGGGACGACGACG--GGCCGCGCGGTTCTCCGCGACGTCGTCCGCGGAG 358
consensus_62#1 GCGGCGGGGATGGGGACGACGACGAGGGCCGCGCGGTTCTCCGCGACGTCGTCCGCGGAG 359
************************ **********************************
consensus_62#0 CCTGCTGAGGTGCAGTCGTCGTCGTCGTCGAGGAAGCGCGCGGACGCGCTGGCGAGGCTG 418
consensus_62#1 CCTGCTGAGGTGCAGTCGTCGTCGTCGTCGAGGAAGCGCGCGGACGCGCTGGCGAGGCTG 419
************************************************************
consensus_62#0 CGGGCGGCGTTCCTGGCGGCGATCACGCACCGGCGGCGGCGGCGGCAGCTGGGGTCGAGC 478
consensus_62#1 CGGGCGGCGTTCCTGGCGG----------------------------------------- 438
*******************
consensus_62#0 CTGACGGGCACCATCTTCGGGCGGCGCCGCGGCCGCGTTCACGTCGCGCTGCAGACGGAC 538
consensus_62#1 ------------------------------------------------------------
consensus_62#0 ACCCGCTCGCCGCCGGTGCTGCTGGTGGAGATGGCCGCCTACTCCACCGGCGCGCTCGTC 598
consensus_62#1 ----------------------------AGATGGCCGCCTACTCCACCGGCGCGCTCGTC 470
********************************
consensus_62#0 AGGGAGATGTCCTCCGGCCTCGTCCGCCTCGCGCTCGAGTGCGAGAAGCAACCAATCAAC 658
consensus_62#1 AGGGAGATGTCCTCCGGCCTCGTCCGCCTCGCGCTCGAGTGCGAGAAGCAACCAATCAAC 530
************************************************************
consensus_62#0 CCAGGCGAGAAGCGGCGGGCGCTGCTGGAGGAGCCGACGTGGCGGGCCTACTGCAACGGC 718
consensus_62#1 CCAGGCGAGAAGCGGCGGGCGCTGCTGGAGGAGCCGACGTGGCGGGCCTACTGCAACGGC 590
************************************************************
consensus_62#0 CGAAAGTGCGGCTTCGCGGTGCGCAGGGAGTGCGGCGCCGACGAGTGGAGGGTTCTTGGC 778
consensus_62#1 CGAAAGTGCGGCTTCGCGGTGCGCAGGGAGTGCGGCGCCGACGAGTGGAGGGTTCTTGGC 650
************************************************************
consensus_62#0 GCCGTCGAGCCGGTGTCCGTCGGCGCCGGCGTTCTCCCCGACGACGCCGCCGCCGCCGCC 838
consensus_62#1 GCCGTCGAGCCGGTGTCCGTCGGCGCCGGCGTTCTCCCCGACGACGCCGCCGCCGCCGCC 710
************************************************************
consensus_62#0 GCCGCCGAGGAGGGCGACCTGATGTACATGCGCGCGAGGTTCGAGCGGGTGGTCGGGTCG 898
consensus_62#1 GCCGCCGAGGAGGGCGACCTGATGTACATGCGCGCGAGGTTCGAGCGGGTGGTCGGGTCG 770
************************************************************
consensus_62#0 AGGGACTCGGAGGCGTTCTACATGATGAACCCTGACGGCAGCGGAGGCCCGGAGCTCAGC 958
consensus_62#1 AGGGACTCGGAGGCGTTCTACATGATGAACCCTGACGGCAGCGGCGGCCCGGAGCTCAGC 830
******************************************** ***************
consensus_62#0 ATCTACCTGCTCAGAGTCTGACCATGGATCATACTATCATGGAGCAAAATCGAAAAGAAA 1018
consensus_62#1 ATCTACCTGCTCAGAGTCTGACCATGGATCATACTATCATGGAGCAAAATCGAAAAGAAA 890
************************************************************
consensus_62#0 AAATGAGAGAAGAAATCATCTTGATGTTTGCAATTAATTGTACGTAATCCATCCATCCAT 1078
consensus_62#1 AAATGAGAGAAGAAATCATCTTGATGTTTGCAATTAATTGTACGTAATCCATCCATCCAT 950
************************************************************
consensus_62#0 GCATGCATAGTTTGGCTTGTGTTAATTACTTTCTTGGGTTTCATGTAATTTGAAGGGTGT 1138
consensus_62#1 GCATGCATAGTTTGGCTTGTGTTAATTACTTTCTTGGGTTTCATGTAATTTGAAGGGTGT 1010
************************************************************
consensus_62#0 CAAGGTGTGTACAGTATTACTGATCACTTGGGGGGGGCTTAATATATCAATCTGGTAAAC 1198
consensus_62#1 CAAGGTGTGTACAGTATTACTGATCACTTGGGGGGGGCTTAATATATCAATCTGGTAAAC 1070
************************************************************
consensus_62#0 ATT--------------------------------------------------------- 1201
consensus_62#1 ATTGGTGTGATGCACTGATGCTGCTGTACTATCTGTTTGTGAGACATTTCACGTCTGTGT 1130
***
consensus_62#0 --------------------
consensus_62#1 GCTTCAGGACTAATTCATAA 1150
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||