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Oryza sativa
cluster # 6203 cluster # 6203       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6203#0 length = 1111 sequences # 4  

consensusID : consensus_6203#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1111
fasta sequence
                              [AGCACGTTCGCCGACGTTCACGCGCCGCCGGGGCCGAAGCAGAGGGAGCGCGACCACCTCGGCGACGGCCAGCCGCCGACGTGCAGCCACCGGCGAACCCCCCCTCTCCCACCCTCCCTACTTTCCGCCGGTGAAGGGTTGGTCCGAGGTCTCAGCACGTTTGCCACTGTTCACGTGCCGGACCAAATCAGAGGAGGGTGACTACCTCAGGAACGGTCGATCGGCGTCTATTGGCTTCCCTCCAGTGAAGGTTCATACATTTGCATGGATCAGGAAGAGCATGTAATTTGTGGCATAGAGGATGCCCGTCGCCTCGTGGGCCTTCCACCCCCAATCCATATCACGATGACAGAGTGTCTGGTAAAGGACGCGGGAGAGGTGCTGAAGCTACTTGATGAGAACATTACCAGTGGGAGATGGACTGTCTCAGATGAGACTGTAGCCCTCCTCAGGGTTCTTGCAGAAGGTTGTGAGGATCTGATGTATG-CTAAG-AAGG-AATTAACTGACACTGT-CAAGGCTG-CACAGGATGACCTGAT-CACGTTGGGAGGCAACACCCTAT-CAGTGGAGGAACAGCTTTTGCTG-CCAGAGAAAGAAGATCGTCGTATTTTGGTTCTCCGTGCACTTAACCTT-CCACCGGACAGCAAGCCATCTCGGAGCTTTGACGTGGAGAACATCGATGCCGT-GCTTGCTGCGCGTGGTCGGCTCCGTGGTCAGATTGTACAGGCCCGAGCAGACATGGAGGGTCTGAGGCAGTACATCACGGAGACGTGGTTG-CCGTGGGTAGAG-CAGCGGTTGAACACTCATCTCACCCTGGGAGAGCCAGTTATGCCGTAGAGTGATTCCTTCACAGTGTTGTTTTGAGTCTTCATCATGAAACTTGTTGCCTTTAGCTTACTGATGTCTCCGTATATGTGCCTCTTCTAAACTGTAGTTTCCAGAATCTGCATGTCCCAGGATTGACTAGTAACCACTTATTTCCTGAATCTGCATGTCCCAGCAGGATAACTAAGTTGTTGGTACTGCCATGTTAATTTGTTGTTTTGGATGCTACTTTCCCCCAGATATTTCTGTTATCCACTGTAATATATTCACTCACCTTTATAGCAAAAAA]

[+] EMBL AK121834             [AGCACGTTCGCCGACGTTCACGCGCCGCCGGGGCCGAAGCAGAGGGAGCGCGACCACCTCGGCGACGGCCAGCCGCCGACGTGCAGCCACCGGCGAACCCCCCCTCTCCCACCCTCCCTACTTTCCGCCGGTGAAGGGTTGGTCCGAGGTCTCAGCACGTTTGCCACTGTTCACGTGCCGGACCAAATCAGAGGAGGGTGACTACCTCAGGAACGGTCGATCGGCGTCTATTGGCTTCCCTCCAGTGAAGGTTCATACATTTGCATGGATCAGGAAGAGCATGTAATTTGTGGCATAGAGGATGCCCGTCGCCTCGTGGGCCTTCCACCCCCAATCCATATCACGATGACAGAGTGTCTGGTAAAGGACGCGGGAGAGGTGCTGAAGCTACTTGATGAGAACATTACCAGTGGGAGATGGACTGTCTCAGATGAGACTGTAGCCCTCCTCAGGGTTCTTGCAGAAGGTTGTGAGGATCTGATGTATG CTAAG AAGG AATTAACTGACACTGT CAAGGCTG CACAGGATGACCTGAT CACGTTGGGAGGCAACACCCTAT CAGTGGAGGAACAGCTTTTGCTG CCAGAGAAAGAAGATCGTCGTATTTTGGTTCTCCGTGCACTTAACCTT CCACCGGACAGCAAGCCATCTCGGAGCTTTGACGTGGAGGACATCGATGCCGT GCTTGCTGCGCGTGGTCGGCTCCGTGGTCAGATCGTACAGGCCCGAGCAGACATGGAGGGTCTGAGGCAGTACATCACGGAGACGTGGTTG CCGTGGGTAGAG CAGCGGTTGAACACTCATCTCACCCTGGGAGAGCCAGTTATGCCGTAGAGTGATTCCTTCACAGTGTTGTTTTGAGTCTTCATCATGAAACTTGTTGCCTTTAGCTTACTGATGTCTCCGTATATGTGCCTCTTCTAAACTGTAGTTTCCAGAATCTGCATGTCCCAGGATTGACTAGTAACCACTTATTTCCTGAATCTGCATGTCCCAGCAGGATAACTAAGTTGTTGGTACTGCCATGTTAATTTGTTGTTTTGGATGCTACTTTCCCCCAGATATTTCTGTTATCCACTGTAATATATTCACTCA                ]
[+] EMBL AU083375             [                    CGCGCCGCCGGGGCCGAAGCAGAGGGAGCGCGACCACCTCGGCGACGGCCAGCCGCCGACGTGCAGCCACCGGCGAACCCCCCCTCTCCCACCCTCCCTACTTTCCGCCGGTGAAGGGTTGGTCCGAGGTCTCAGCACGTTTGCCACTGTTCACGTGCCGGACCAAATCAGAGGAGGGTGACTACCTCAGGAACGGTCGATCGGCGTCTATTGGCTTCCCTCCAGTGAAGGTTCATACATTTGCATGGATCAGGAAGAGCATGTAATTTGTGGCATAGAGGATGCCCGTCGCCTCGTGGGCCTTCCACCCCCAATCCATATCACGATGACAGAGTGTCTGGTAAAGGACGCGGGAGAGGTGCTGAAGCTACTTGATGAGAACATTACCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU083376             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                     nTTCTTGCAGAA GTTGTGAGGATCTGATGTATGCCTAAGAAAGGAAATTAACTGACACTGTCCAAGGCTGCCACAGGATGA CTGATCCACNTTGGGAGGCAACACCNTATCCAGTGGAGGAACAGCTTTTGCTGCCCAGAGAAAGAAGATCGTCGTATTTTGGTTCTCCGTGCACTTAACCTT CCACCGGACAGCAAGCCATCTCGGAGCTTTGACGTGGAGAACATCGATGCCGTGGCTTG TGCGCGTGGTCGGCTCCGTGGTCAGATTGTACAGGCCCGAGCAGACATGGAGGGTCTGAGGCAGTACATCACGGAGACGTGGTTGCCCGTGGGTAGAGTCAGCGGTTGAACACTCATCTCA CCTGGGAGAGCCAGTTATGCCGTAGAGTGATTCCTTCACAGTGTTGTTTTGAGTCTTCATCATGAAACTTGTTGCCTTTAGCTTACTGATGTCTCCGTATATGTGCCTCTTCTAAACTGTAGTTTCCAGAATCTGCATGTCCCAGGATTGACTAGTAACCACTTATTTCCTGAATCTGCATGTCCCAGCAGGATAACTAAGTTGTTGGTACTGCCATGTTAATTTGTTGTTTTGGATGCTACTTTCCCCCAGATATTTCTGTTATCCACTGTAATATATTCACTCACCTTTATAGCAAAAAA]
[-] EMBL AU225650             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ccgctTG CCAGAGAAAGAAGATCGTCGTATTTGGGTTCTCCGTGCACTTAACCTTCCCACCGGACAGCAAGCCATCTCGGAGCTTTGACGTGGAGAACATCGATGCCGT GCTTGCTGCGCGTGGTCGGCTCCGTGGTCAGATTGTACAGGCCCGAGCAGACATGGAGGGTCTGAGGCAGTACATCACGGAGACGTGGTTG CCGTGGGTAGAG CAGCGGTTGAACACTCATCTCACCCTGGGAGAGCCAGTTATGCCGTAGAGTGATTCCTTCACAGTGTTGTTTTGAGTCTTCATCATGAAACTTGTTGCCTTTAGCTTACTGATGTCTCCGTATATGTGCCTCTTCTAAACTGTAGTTTCCAGAATCTGCATGTCCCAGGATTGACTAGTAACCACTTATTTCCTGAATCTGCATGTCCCAGCAGGATAACTAAGTTGTTGagcggc                                                                                         ]


>consensus_6203#0 AGCACGTTCGCCGACGTTCACGCGCCGCCGGGGCCGAAGCAGAGGGAGCGCGACCACCTC GGCGACGGCCAGCCGCCGACGTGCAGCCACCGGCGAACCCCCCCTCTCCCACCCTCCCTA CTTTCCGCCGGTGAAGGGTTGGTCCGAGGTCTCAGCACGTTTGCCACTGTTCACGTGCCG GACCAAATCAGAGGAGGGTGACTACCTCAGGAACGGTCGATCGGCGTCTATTGGCTTCCC TCCAGTGAAGGTTCATACATTTGCATGGATCAGGAAGAGCATGTAATTTGTGGCATAGAG GATGCCCGTCGCCTCGTGGGCCTTCCACCCCCAATCCATATCACGATGACAGAGTGTCTG GTAAAGGACGCGGGAGAGGTGCTGAAGCTACTTGATGAGAACATTACCAGTGGGAGATGG ACTGTCTCAGATGAGACTGTAGCCCTCCTCAGGGTTCTTGCAGAAGGTTGTGAGGATCTG ATGTATGCTAAGAAGGAATTAACTGACACTGTCAAGGCTGCACAGGATGACCTGATCACG TTGGGAGGCAACACCCTATCAGTGGAGGAACAGCTTTTGCTGCCAGAGAAAGAAGATCGT CGTATTTTGGTTCTCCGTGCACTTAACCTTCCACCGGACAGCAAGCCATCTCGGAGCTTT GACGTGGAGAACATCGATGCCGTGCTTGCTGCGCGTGGTCGGCTCCGTGGTCAGATTGTA CAGGCCCGAGCAGACATGGAGGGTCTGAGGCAGTACATCACGGAGACGTGGTTGCCGTGG GTAGAGCAGCGGTTGAACACTCATCTCACCCTGGGAGAGCCAGTTATGCCGTAGAGTGAT TCCTTCACAGTGTTGTTTTGAGTCTTCATCATGAAACTTGTTGCCTTTAGCTTACTGATG TCTCCGTATATGTGCCTCTTCTAAACTGTAGTTTCCAGAATCTGCATGTCCCAGGATTGA CTAGTAACCACTTATTTCCTGAATCTGCATGTCCCAGCAGGATAACTAAGTTGTTGGTAC TGCCATGTTAATTTGTTGTTTTGGATGCTACTTTCCCCCAGATATTTCTGTTATCCACTG TAATATATTCACTCACCTTTATAGCAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)