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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6205#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1465 fasta sequence
[ATCCCCCACCTTTAAGCCCGCGACGTGCTTCCTATAAATTAACTCCCCCCGATCCTCCTCCCAACCATTCCACACCTTGGCAATCATGGGGAAGAAGACGACGACGTCGTCGTCGCCGTCGTGGAGCTCGCTGTTCGGGCTCGGCTGCTTCACCTCCTCCCACAGCGACGGCGGCTCGGCGGCGGCCAAGAACCCGGGGACGCCGCTGCCGGCGCGGCCGTCGTCGTGCAACAGCAACGACGGGGTGGCGGCGGCGGTGATGCCGTCGCCGGAGGACCTGTCGCAGTCTCTGGCGGGGAGCGGGGTGGAGGCGTTCACGGTGGAGGAGCTGAGGAGGGCGACTCGGGACTTCTCAGTGAGCAACTTCGTGGGCGAGGGGGGGTTCGGGCCGGTGTACAAGGGGTACGTCCACGAGCGGCTCAAGCCCGGCGTGCGCGCGCAGGCCGTCGCCGTCAAGCTGCTCGACCTCGAGGGCTCCCATGGCCACAAGGAATGGCTGGCTGAAGTCATATTTCTTGGGCAATTGACACATCATCACCTCCTCAAGCTGATCGGATACTGCTACGATGATGAGCACAGACTTCTCGTCTACGAGTTCATGGCTAGGGGCAGCTTGGAGAAGCACCTCTTCAAAAAGTACTCTGCGTCGCTGCCGTGGTCAACACGCTTGAAGATCGCCATTGGAGCGGCCAGAGGTTTGGCCTTCCTCCATGAAGCTGCCAAGCCCGTCATCTATCGCGACTTCAAGACCTCCAACATCCTACTCAACTCGGACTACGAAGCAAAACTTTCGGATTTCGGACTGGCCAAAGATGGGCCTCAAGAAGACGAGACACATGTCTCCACTAGAGTGATGGGCACACAGGGCTATGCCGCACCAGAATACATCATGACTGGTCATCTAACGACAAAGAGCGATGTGTATAGCTATGGTGTGGTGCTGCTGGAGCTACTAACCGGACGGAAAGCCGTGGATAAGAAGAGACCGCCGCGAGAGCAAAACCTAGTGGAATGGGCTCGGCCATGCCTACATGACTCTCGCCGGCTCAACCGTGTCATCGACAAAAGCTTGAACGGGCAGTACTCGACTCGAGCCGTACAAAAGGCTGCGGCCATAGCGTATCAGTGCTTGAGTGTTAGCCCTAAGTCTCGACCCCGGATGTCAGCGGTTGTGGAGGCCCTGGAACCACTTCTGGCCATGGATGATGGCATTGTAGAGCCATTTGTGTACATGGCACCACCCGAGAGTAAATAAATGAATCAATAATTTGTGTGGAGCATATGTACAAACATGCCATTCTCCAATCCTTGCAATCAATTTAAAATATAGAAAATTCTCCATTTGCATTTAGAAATTTCAGCATATCCCTGTATGCCTCTGAGTTTTTCTTAAGAGTAAATTATATTGGTGATACACAAACTTGTTAGGTGGGTTTAATTTAGTACATAAACTTATAAAATACTT]
[+] EMBL CB678294 [ATCCCCCACCTTTAAGCCCGCGACGTGCTTCCTATAAATTAACTCCCCCCGATCCTCCTCCCAACCATTCCACACCTTGGCAATCATGGGGAAGAAGACGACGACGTCGTCGTCGCCGTCGTGGAGCTCGCTGTTCGGGCTCGGCTGCTTCACCTCCTCCCACAGCGACGGCGGCTCGGCGGCGGCCAAGAACCCGGGGACGCCGCTGCCGGCGCGGCCGTCGTCGTGCAACAGCAACGACGGGGTGGCGGCGGCGGTGATGCCGTCGCCGGAGGACCTGTCGCAGTCTCTGGCGGGGAGCGGGGTGGAGGCGTTCACGGTGGAGGAGCTGAGGAGGGCGACTCGGGACTTCTCAGTGAGCAACTTCGTGGGCGAGGGGGGGTTCGGGCCGGTGTACAAGGGGTACGTCCACGAGCGGCTCAAGCCCGGCGTGCGCGCGCAGGCCGTCGCCGTCAAGCTGCTCGACCTCGAGGGCTCCCATGGCCACAAGGAATGGCTGGCTGAAGTCATATTTCTTGGGCAATTGACACATCATCACCTCCTCAAGCTGATCGGATACTGCTACGATGATGAGCACAGACTTCTCGTCTACGAGTTCATGGCT ]
[+] EMBL AK121848 [ CCTTGGCAATCATGGGGAAGAAGACGACGACGTCGTCGTCGCCGTCGTGGAGCTCGCTGTTCGGGCTCGGCTGCTTCACCTCCTCCCACAGCGACGGCGGCTCGGCGGCGGCCAAGAACCCGGGGACGCCGCTGCCGGCGCGGCCGTCGTCGTGCAACAGCAACGACGGGGTGGCGGCGGCGGTGATGCCGTCGCCGGAGGACCTGTCGCAGTCGCTGGCGGGGAGCGGGGTGGAGGCGTTCACGGTGGAGGAGCTGAGGAGGGCGACGCGGGACTTCTCGGTGAGCAACTTCGTGGGCGAGGGGGGGTTCGGGCCGGTGTACAAGGGGTACGTCGACGAGCGGCTCAAGCCCGGCGTGCGCGCGCAGGCCGTCGCCGTCAAGCTGCTCGACCTCGAGGGCTCCCAGGGCCACAAGGAATGGCTGGCTGAAGTCATATTTCCTGGGCAATTGAGACATCATCACCTCGTCAAGCTGATCGGATACTGCTACGAGGATGAGCACAGACTTCTCGTCTACGAGTTCATGGCTAGGGGCAGCTTGGAGAAGCACCTCTTCAAAAAGTACTCTGCGTCGCTGCCGTGGTCAACACGCTTGAAGATCGCCATTGGAGCGGCCAGAGGTTTGGCCTTCCTCCATGAAGCTGCCAAGCCCGTCATCTATCGCGACTTCAAGACCTCCAACATCCTACTCAACTCGGACTACGAAGCAAAACTTTCGGATTTCGGACTGGCCAAAGATGGGCCTCAAGAAGACGAGACACATGTCTCCACTAGAGTGATGGGCACACAGGGCTATGCCGCACCAGAATACATCATGACTGGTCATCTAACGACAAAGAGCGATGTGTATAGCTATGGTGTGGTGCTGCTGGAGCTACTAACCGGACGGAAAGCCGTGGATAAGAAGAGACCGCCGCGAGAGCAAAACCTAGTGGAATGGGCTCGGCCATGCCTACATGACTCTCGCCGGCTCAACCGTGTCATCGACAAAAGCTTGAACGGGCAGTACTCGACTCGAGCCGTACAAAAGGCTGCGGCCATAGCGTATCAGTGCTTGAGTGTTAGCCCTAAGTCTCGACCCCGGATGTCAGCGGTTGTGGAGGCCCTGGAACCACTTCTGGCCATGGATGATGGCATTGTAGAGCCATTTGTGTACATGGCACCACCCGAGAGTAAATAAATGAATCAATAATTTGTGTGGAGCATATGTACAAACATGCCATTCTCCAATCCTTGCAATCAATTTAAAATATAGAAAATTCTCCATTTGCATTTAGAAATTTCAGCATATCCCTGTATGCCTCTGAGTTTTTCTTAAGAGTAAATTATATTGGTGATACACAAACTTGTTAGGTGGGTTTAATTTAGTACATAAACTTATAAAATACTT]
[-] EMBL CB678295 [ TTGGAGCGGCCAGAGGTTTGGCCTTCCTCCATGAAGCTGCCAAGCCCGTCATCTATCGCGACTTCAAGACCTCCAACATCCTACTCAACTCGGATTAAGAAGCAAAACTTTCGGATTTTGGACTGGCCAAAGATGGGCCTCAAGAAGACGAGACACATGTCTCCACTAGAGTGATGGGCACACAGGGCTATGCCGCACCAGAATACATCATGACTGGTCATCTAACGACAAAGAGCGATGTGTATAGCTATGGTGTGGTGCTGCTGGAGCTACTAACCGGACGGAAAGCCGTGGATAAGAAGAGACCGCCGCGAGAGCAAAACCTAGTGGAATGGGTTCGGCCATGCGTACATGACTCTGGCGGGCTCAACCGTGTCATTGACAAAAGCTTGAACGGGCAGTACTCGACTGGAGCCGTACAAAAGGTTGCGGCCATAGTGTATCAGTGCTTGAGTGTTAGCCCTAAGTCTCGACCCCGGATGTCAGCGGTTGTGGAGGCCCTGGAACCACTTCTGGCCATGGATGATGGCATTGTAGAGCCATTTGTGTACATGGCACCACCCGAGAGTAAATAAATGAATCAATAATTTGTGTGGAGCATATGTACAAACATTCCATTTTCCAATCCTTGCAATCAATTTAAAATATAGAAAATTCTCCATTTGCATTTAGAAATTTCAGCATATCCCTGTATGCCTAGGAGTTTTTCTTAAGAGTAAATTATATTGGTGATA ACAAAaaggaaaaa ]
consensusID : consensus_6205#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence
[AAACCTGTGGATAAGAAGAGACCCCTGCGAGACCCAAACCCTAGTGGAATGGGCTCGCCCATGCCTACCATGACTCTCGCCGGCTGAACCCGTGTCATCGACCAAAAGCTTGAACCGGCCAGTACCTCGACTCGACCCGTACAAAGGCTNCGGCCATAGCGTATCAGTGCTTGAGTGTTAGCCCTAAGTCTCGACCCCGGATGTCACCGGTTGTGGAGGCCCTGGAACCACTTCTGGCCCATGGATGATGCACTTGTAGACCATTTGTGTACATGGCACCACCCGAGAGTAAATAAATGAATCATAATTTGTTGGAGCATATGTACAACATCCNTTCTCCATCCTTCCATCATTTAAAATATAGAAAAAA]
[+] EMBL BM420562 [AAACCTGTGGATAAGAAGAGACCCCTGCGAGACCCAAACCCTAGTGGAATGGGCTCGCCCATGCCTACCATGACTCTCGCCGGCTGAACCCGTGTCATCGACCAAAAGCTTGAACCGGCCAGTACCTCGACTCGACCCGTACAAAGGCTNCGGCCATAGCGTATCAGTGCTTGAGTGTTAGCCCTAAGTCTCGACCCCGGATGTCACCGGTTGTGGAGGCCCTGGAACCACTTCTGGCCCATGGATGATGCACTTGTAGACCATTTGTGTACATGGCACCACCCGAGAGTAAATAAATGAATCATAATTTGTTGGAGCATATGTACAACATCCNTTCTCCATCCTTCCATCATTTAAAATATAGAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6205#0 ATCCCCCACCTTTAAGCCCGCGACGTGCTTCCTATAAATTAACTCCCCCCGATCCTCCTC 60
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 CCAACCATTCCACACCTTGGCAATCATGGGGAAGAAGACGACGACGTCGTCGTCGCCGTC 120
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 GTGGAGCTCGCTGTTCGGGCTCGGCTGCTTCACCTCCTCCCACAGCGACGGCGGCTCGGC 180
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 GGCGGCCAAGAACCCGGGGACGCCGCTGCCGGCGCGGCCGTCGTCGTGCAACAGCAACGA 240
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 CGGGGTGGCGGCGGCGGTGATGCCGTCGCCGGAGGACCTGTCGCAGTCTCTGGCGGGGAG 300
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 CGGGGTGGAGGCGTTCACGGTGGAGGAGCTGAGGAGGGCGACTCGGGACTTCTCAGTGAG 360
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 CAACTTCGTGGGCGAGGGGGGGTTCGGGCCGGTGTACAAGGGGTACGTCCACGAGCGGCT 420
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 CAAGCCCGGCGTGCGCGCGCAGGCCGTCGCCGTCAAGCTGCTCGACCTCGAGGGCTCCCA 480
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 TGGCCACAAGGAATGGCTGGCTGAAGTCATATTTCTTGGGCAATTGACACATCATCACCT 540
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 CCTCAAGCTGATCGGATACTGCTACGATGATGAGCACAGACTTCTCGTCTACGAGTTCAT 600
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 GGCTAGGGGCAGCTTGGAGAAGCACCTCTTCAAAAAGTACTCTGCGTCGCTGCCGTGGTC 660
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 AACACGCTTGAAGATCGCCATTGGAGCGGCCAGAGGTTTGGCCTTCCTCCATGAAGCTGC 720
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 CAAGCCCGTCATCTATCGCGACTTCAAGACCTCCAACATCCTACTCAACTCGGACTACGA 780
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 AGCAAAACTTTCGGATTTCGGACTGGCCAAAGATGGGCCTCAAGAAGACGAGACACATGT 840
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 CTCCACTAGAGTGATGGGCACACAGGGCTATGCCGCACCAGAATACATCATGACTGGTCA 900
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 TCTAACGACAAAGAGCGATGTGTATAGCTATGGTGTGGTGCTGCTGGAGCTACTAACCGG 960
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 ACGGAAAGCCGTGGATAAGAAGAGACCGCCGCGAGAGCAAAACC-TAGTGGAATGGGCTC 1019
consensus_6205#1 ----AAACCTGTGGATAAGAAGAGACCCCTGCGAGACCCAAACCCTAGTGGAATGGGCTC 56
*** * ***************** * ****** * ***** ***************
consensus_6205#0 GGCCATGCCTAC-ATGACTCTCGCCGGCTCAACC-GTGTCATCGAC-AAAAGCTTGAACG 1076
consensus_6205#1 GCCCATGCCTACCATGACTCTCGCCGGCTGAACCCGTGTCATCGACCAAAAGCTTGAACC 116
* ********** **************** **** *********** ************
consensus_6205#0 GGC-AGTAC-TCGACTCGAGCCGTACAAAAGGCTGCGGCCATAGCGTATCAGTGCTTGAG 1134
consensus_6205#1 GGCCAGTACCTCGACTCGACCCGTACAAA-GGCTNCGGCCATAGCGTATCAGTGCTTGAG 175
*** ***** ********* ********* **** *************************
consensus_6205#0 TGTTAGCCCTAAGTCTCGACCCCGGATGTCAGCGGTTGTGGAGGCCCTGGAACCACTTCT 1194
consensus_6205#1 TGTTAGCCCTAAGTCTCGACCCCGGATGTCACCGGTTGTGGAGGCCCTGGAACCACTTCT 235
******************************* ****************************
consensus_6205#0 GGCC-ATGGATGATGGCATTGTAGAGCCATTTGTGTACATGGCACCACCCGAGAGTAAAT 1253
consensus_6205#1 GGCCCATGGATGATGCACTTGTAGA-CCATTTGTGTACATGGCACCACCCGAGAGTAAAT 294
**** ********** ******* **********************************
consensus_6205#0 AAATGAATCAATAATTTGTGTGGAGCATATGTACAAACATGCCATTCTCCAATCCTTGCA 1313
consensus_6205#1 AAATGAATCA-TAATTTGT-TGGAGCATATGTACAA-CAT-CCNTTCTCCA-TCCTTCCA 349
********** ******** **************** *** ** ******* ***** **
consensus_6205#0 ATCAATTTAAAATATAGAAAATTCTCCATTTGCATTTAGAAATTTCAGCATATCCCTGTA 1373
consensus_6205#1 TC--ATTTAAAATATAGAAAAAA------------------------------------- 370
*****************
consensus_6205#0 TGCCTCTGAGTTTTTCTTAAGAGTAAATTATATTGGTGATACACAAACTTGTTAGGTGGG 1433
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 TTTAATTTAGTACATAAACTTATAAAATACTT 1465
consensus_6205#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||