These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1496 fasta sequence [GTTGGTTGGGTAGAGTCGTCGCCGGAGTTCATGGGGGCTGAGGCGAAGGCGCCGCTGCTGGAGGGGAGGAGGGGCGCGACGCCGGCGCAGACGCTGGGCAACATCGTCGTCTCCATCGTCGGCACCGGCGTGCTCGGCCTCCCCTACGCCTTCCGCACCTCCGGCTGGCTCGCCGGAGCTCTCGGCGTCGCCGGCGCCGGCGCCGCCACCTTCTACTGCATGCTCCTCCTTCTGGATTGCAGAGACAAGCTACGGGAGCAAGAAGAGGTGGATCACGACGGCAACTACACCTATGGCGACCTCGGCGAGAAATGCTTCGGCGCCATTGGGAGATACTTCACCGAGGTCACCATCATCCTCTCCCAGACCGGCGGCTCCGTCGCCTACCTCGTCTTCATCGGCCAGAACATCTGCTCCGTCTTCCCCACCACCGCCGCCGGCGGCGAGGAGCCGCCGCGTCGCGTGTCGCCGGCAGCCGTCGTCCTCGCCGTGCTCCTGCCGGCCGAGGCGGCGCTCTCCTTCATCCGCTCGCTGTCGTCGCTGGCGCCGTTCAGCATCCTCGCCGACGCGTGCACCGTCCTCGCCGTGGCCACCGTCGTCAGGGAGGACGTCCAGCTCCTCGCCGGCCGCGGCGGGAGCCCATTCCAGGGGCGGAGCGCCCTCGCGGGGCTCTGGGGCGTCCCGTTCGCCTGCGGCGTCGCCGTGTTCTGCTTCGAGGGGTTCTGCCTGACGCTGGCGCTGGAGGCGTCCATGTCCGACCGGAGGAGGTTCCGCCCCGTGCTCCTCCACGCCATCGCCGGCGTCACCGCCGTCTACGTCTGCTTCGGCGTCTGCGGCTACCTCGCCTACGGCGACGTCACCAGAGACATCGTCACTCTCAATCTCCCCAACAACTGGTCCACCGCCGCCGTCAAGATCGTGCTGTGCGTCGCGCTGGCGCTCACGTTCCCGGTGATGATGCACCCGATCCACGAGATCGTGAAGGCCCGGCTGTTCCCGTCGACGGACGGGTGGGCGCGGAAGCGCGCGNCGGTGCAGGCGACCCGCGTGGCGGTGGTGGGCGCGGTGACGGCGGTGGCGTGCTTCGTGCCGGCGTTCGGGGAGTTCGCGGCGTTCGTGGGGAGCACGGTGTGTGCGCTGCTCTCCTTCGTGCTCCCGGCGCTGTTCCACCTCCGCCTCGTCGGAGCGGCGGCGAGCGCGTGGCGGCGCGCGGTGGACGGCGGCTTCTTGCTCCTTGGGCTGGCCTTCGCGGCCCATGGGCTTTACACGGTTGTCTCGGGCCTCTGAACTGGGCCGTAATGGGCTCTCCTCGCCGTCCAATCCCAATCCAGCAGCTTCTCTCTTCCAGTATATATTTTTCCAGACATTTTTCAAGACGTGTATAATGTACTACACTAGATTAGCATACTAGAATTTTTTTTTTCTTCCAATAATGTAAAAGCGTTACATTTGCAGCTAATTTTGCATGTAGGAACACAATTTCCTTATACTTTTTA] [+] EMBL AK121940 [GTTGGTTGGGTAGAGTCGTCGCCGGAGTTCATGGGGGCTGAGGCGAAGGCGCCGCTGCTGGAGGGGAGGAGGGGCGCGACGCCGGCGCAGACGCTGGGCAACATCGTCGTCTCCATCGTCGGCACCGGCGTGCTCGGCCTCCCCTACGCCTTCCGCACCTCCGGCTGGCTCGCCGGAGCTCTCGGCGTCGCCGGCGCCGGCGCCGCCACCTTCTACTGCATGCTCCTCCTTCTGGATTGCAGAGACAAGCTACGGGAGCAAGAAGAGGTGGATCACGACGGCAACTACACCTATGGCGACCTCGGCGAGAAATGCTTCGGCGCCATTGGGAGATACTTCACCGAGGTCACCATCATCCTCTCCCAGACCGGCGGCTCCGTCGCCTACCTCGTCTTCATCGGCCAGAACATCTGCTCCGTCTTCCCCACCACCGCCGCCGGCGGCGAGGAGCCGCCGCGTCGCGTGTCGCCGGCAGCCGTCGTCCTCGCCGTGCTCCTGCCGGCCGAGGCGGCGCTCTCCTTCATCCGCTCGCTGTCGTCGCTGGCGCCGTTCAGCATCCTCGCCGACGCGTGCACCGTCCTCGCCGTGGCCACCGTCGTCAGGGAGGACGTCCAGCTCCTCGCCGGCCGCGGCGGGAGCCCATTCCAGGGGCGGAGCGCCCTCGCGGGGCTCTGGGGCGTCCCGTTCGCCTGCGGCGTCGCCGTGTTCTGCTTCGAGGGGTTCTGCCTGACGCTGGCGCTGGAGGCGTCCATGTCCGACCGGAGGAGGTTCCGCCCCGTGCTCCTCCACGCCATCGCCGGCGTCACCGCCGTCTACGTCTGCTTCGGCGTCTGCGGCTACCTCGCCTACGGCGACGTCACCAGAGACATCGTCACTCTCAATCTCCCCAACAACTGGTCCACCGCCGCCGTCAAGATCGTGCTGTGCGTCGCGCTGGCGCTCACGTTCCCGGTGATGATGCACCCGATCCACGAGATCGTGAAGGCCCGGCTGTTCCCGTCGACGGACGGGTGGGCGCGGAAGCGCGCGNCGGTGCAGGCGACCCGCGTGGCGGTGGTGGGCGCGGTGACGGCGGTGGCGTGCTTCGTGCCGGCGTTCGGGGAGTTCGCGGCGTTCGTGGGGAGCACGGTGTGTGCGCTGCTCTCCTTCGTGCTCCCGGCGCTGTTCCACCTCCGCCTCGTCGGAGCGGCGGCGAGCGCGTGGCGGCGCGCGGTGGACGGCGGCTTCTTGCTCCTTGGGCTGGCCTTCGCGGCCCATGGGCTTTACACGGTTGTCTCGGGCCTCTGAACTGGGCCGTAATGGGCTCTCCTCGCCGTCCAATCCCAATCCAGCAGCTTCTCTCTTCCAGTATATATTTTTCCAGACATTTTTCAAGACGTGTATAATGTACTACACTAGATTAGCATACTAGAATTTTTTTTTTCTTCCAATAATGTAAAAGCGTTACATTTGCAGCTAATTTTGCATGTAGGAACACAATTTCCTTATACTTTTTA] [+] EMBL CA756265 [ AGTCGTCGCCGGAGTTCATGGGGGCTGAGGCGAAGGCGCCGCTGCTGGAGGGGAGGAGGGGCGCGACGCCGGCGCAGACGCTGGGCAACATCGTCGTCTCCATCGTCGGCACCGGCGTGCTCGGCCTCCCCTACGCCTTCCGCACCTCCGGCTGGCTCGCCGGAGCTCTCGGCGTCGCCGGCGCCGGCGCCGCCACCTTCTACTGCATGCTCCTCCTTCTGGATTGCAGAGACAAGCTACGGGAGCAAGAAGAGGTGGATCACGACGGCAACTACACCTATGGCGACCTCGGCGAGAAATGCTTCGGCGCCATTGGGAGATACTTCACCGAGGTCACCATCATCCTCTCCCAGACCGGCGGCTCCGTCGCCTACCTCGTCTTCATCGGCCAGAACATCTGCTCCGTCTTCCCCACCACCGCCGCCGGCGGCGAGGAGCCGCCGCGTCGCGTGTCGCCGGCAGCCGTCGTCCTCGCCGTGCTCCTGCCGGCCGAGGCGGCGCTCTCCTTCATCCGCTCGCTGTCGTCGCTGGCGCCGTTCAGCATCCTCGCCGACGCGTGCACCGTCCTCGCCGTGGCCACCGTCGTCAGGGAGGACGTCCAGCTCCT ] [+] EMBL CB656899 [ GTCGGCACCGGCGTGCTCCCCCTCCCCTACGCCTTCCGCACCTCCGGCTGGCTCGCCGGAGCTCTCGGCGTCGCCGGCGCCGGCGCCGCCACCTTCTACTGCATGCTCCTCCTTCTGGATTGCAGACACAAGCTACCGGAGCAAGAAGAGGTGGATCACGACGGCAACTACACCTATGGCGACCTCGGCGAGAAATGCTTCGGCGCCATTGGGAGATACTTCACCGAGGTCACCATCATCCTCTCCCAGACCGGCGGCTCCGACGCCTACCTCGTCTTCATCCGCCAGAACATCTGCTCCGTCTTCCCCACCACCGCCGCCGGCGGCGAGGAGCCGCCGCGTCGCGTGTCGCCGGCAGCCGTCGTCCTCACCGTGCTCCTGCCGGCCGAGGAGGCGCTCTCCTTCATCCACTCGCTGTCGTCACTGGCGCCGTTCAGCATCCTCTCCGACGCGTGCACCGTCCTCGCCGTGGCCACCGTCGTCAGGGAGGACG ] consensusID : consensus_6210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [CAACTGGTCCACCGCCGCCGTCAAGGTCACCACCAAATCAAACATAAATTCTTTTAGAGTTCTTTGATCAAGTTGGCCATCAAGCACGATTTGATTATCCGATTCGCAGATCGTGCTGTGCGTCGCGCTGGCGCTCACGTTCCCGGTGATGATGCACCCGATCCACGAGATCGTGGAGGCGCGGCTGTTCCCGTCGGCGGGCGGGTGGGCGCGGAAGCGCGCGGCGGTGCAGGCGAGCCGCGTGGCGGTGGTGGGCGCGGTGACGGCGGTGGCGTGCTTCGTGCCGGCGTTCGGGGAGTTCGCGGCGTTCGTGGGGAGCACGGTGTGTGCGCTGCTCTCCTTCGTGCTCCCGGCGCTGTTCCACCTCCGCCTCGTCGGAGCGGCGGCGAGCGCGTGGCGGCGCGCGGTGGACGGCGGCTTCTTGCTCCTTGGGCTGGCCTTCGCGGCCCATGGGCTTTACACGGTTGTCTCGGGCCTCTGAACTGGGCCGTAATGGGCTCTCCTCGCCGTCCAATCCCAATCCAGCAGCTTCTCTCTTCCAGTATATATTTTTCCAGACATTTTTCAAGACGTGTATAATGTACTACACTAGATTAGCATACTAGAATTTTTTTTTTCTTCCAATAATGTAAAAGCGTTACATTTGCAGATGATTTTGCATGTAGGAACACAATTTCCTTATAAAAAAAAAGG] [-] EMBL CB656900 [CAACTGGTCCACCGCCGCCGTCAAGGTCACCACCAAATCAAACATAAATTCTTTTAGAGTTCTTTGATCAAGTTGGCCATCAAGCACGATTTGATTATCCGATTCGCAGATCGTGCTGTGCGTCGCGCTGGCGCTCACGTTCCCGGTGATGATGCACCCGATCCACGAGATCGTGGAGGCGCGGCTGTTCCCGTCGGCGGGCGGGTGGGCGCGGAAGCGCGCGGCGGTGCAGGCGAGCCGCGTGGCGGTGGTGGGCGCGGTGACGGCGGTGGCGTGCTTCGTGCCGGCGTTCGGGGAGTTCGCGGCGTTCGTGGGGAGCACGGTGTGTGCGCTGCTCTCCTTCGTGCTCCCGGCGCTGTTCCACCTCCGCCTCGTCGGAGCGGCGGCGAGCGCGTGGCGGCGCGCGGTGGACGGCGGCTTCTTGCTCCTTGGGCTGGCCTTCGCGGCCCATGGGCTTTACACGGTTGTCTCGGGCCTCTGAACTGGGCCGTAATGGGCTCTCCTCGCCGTCCAATCCCAATCCAGCAGCTTCTCTCTTCCAGTATATATTTTTCCAGACATTTTTCAAGACGTGTATAATGTACTACACTAGATTAGCATACTAGAATTTTTTTTTTCTTCCAATAATGTAAAAGCGTTACATTTGCAGATGATTTTGCATGTAGGAACACAATTTCCTTATAAAAAAAAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6210#0 GTTGGTTGGGTAGAGTCGTCGCCGGAGTTCATGGGGGCTGAGGCGAAGGCGCCGCTGCTG 60 consensus_6210#1 ------------------------------------------------------------ consensus_6210#0 GAGGGGAGGAGGGGCGCGACGCCGGCGCAGACGCTGGGCAACATCGTCGTCTCCATCGTC 120 consensus_6210#1 ------------------------------------------------------------ consensus_6210#0 GGCACCGGCGTGCTCGGCCTCCCCTACGCCTTCCGCACCTCCGGCTGGCTCGCCGGAGCT 180 consensus_6210#1 ------------------------------------------------------------ consensus_6210#0 CTCGGCGTCGCCGGCGCCGGCGCCGCCACCTTCTACTGCATGCTCCTCCTTCTGGATTGC 240 consensus_6210#1 ------------------------------------------------------------ consensus_6210#0 AGAGACAAGCTACGGGAGCAAGAAGAGGTGGATCACGACGGCAACTACACCTATGGCGAC 300 consensus_6210#1 ------------------------------------------------------------ consensus_6210#0 CTCGGCGAGAAATGCTTCGGCGCCATTGGGAGATACTTCACCGAGGTCACCATCATCCTC 360 consensus_6210#1 ------------------------------------------------------------ consensus_6210#0 TCCCAGACCGGCGGCTCCGTCGCCTACCTCGTCTTCATCGGCCAGAACATCTGCTCCGTC 420 consensus_6210#1 ------------------------------------------------------------ consensus_6210#0 TTCCCCACCACCGCCGCCGGCGGCGAGGAGCCGCCGCGTCGCGTGTCGCCGGCAGCCGTC 480 consensus_6210#1 ------------------------------------------------------------ consensus_6210#0 GTCCTCGCCGTGCTCCTGCCGGCCGAGGCGGCGCTCTCCTTCATCCGCTCGCTGTCGTCG 540 consensus_6210#1 ------------------------------------------------------------ consensus_6210#0 CTGGCGCCGTTCAGCATCCTCGCCGACGCGTGCACCGTCCTCGCCGTGGCCACCGTCGTC 600 consensus_6210#1 ------------------------------------------------------------ consensus_6210#0 AGGGAGGACGTCCAGCTCCTCGCCGGCCGCGGCGGGAGCCCATTCCAGGGGCGGAGCGCC 660 consensus_6210#1 ------------------------------------------------------------ consensus_6210#0 CTCGCGGGGCTCTGGGGCGTCCCGTTCGCCTGCGGCGTCGCCGTGTTCTGCTTCGAGGGG 720 consensus_6210#1 ------------------------------------------------------------ consensus_6210#0 TTCTGCCTGACGCTGGCGCTGGAGGCGTCCATGTCCGACCGGAGGAGGTTCCGCCCCGTG 780 consensus_6210#1 ------------------------------------------------------------ consensus_6210#0 CTCCTCCACGCCATCGCCGGCGTCACCGCCGTCTACGTCTGCTTCGGCGTCTGCGGCTAC 840 consensus_6210#1 -----------CAACTGGTCCACCGCCGCCGTCAAGGTC-ACCACCAAATCAAACATAAA 48 ** * * * ******** * *** * * ** * consensus_6210#0 CTCGCCTACGGCGACGTCACCAGAGACATCGTCACTCTCAATCTCCCCAACAACTGGTCC 900 consensus_6210#1 TTCTTTTAGAGTTCTTTGATCAAGTTGGCCATCAAGCACGATTTG---ATTATCCGATTC 105 ** ** * * * ** * *** * * ** * * * * * * * consensus_6210#0 ACCGCCGCCGTCAAGATCGTGCTGTGCGTCGCGCTGGCGCTCACGTTCCCGGTGATGATG 960 consensus_6210#1 GC-----------AGATCGTGCTGTGCGTCGCGCTGGCGCTCACGTTCCCGGTGATGATG 154 * *********************************************** consensus_6210#0 CACCCGATCCACGAGATCGTGAAGGCCCGGCTGTTCCCGTCGACGGACGGGTGGGCGCGG 1020 consensus_6210#1 CACCCGATCCACGAGATCGTGGAGGCGCGGCTGTTCCCGTCGGCGGGCGGGTGGGCGCGG 214 ********************* **** *************** *** ************* consensus_6210#0 AAGCGCGCGNCGGTGCAGGCGACCCGCGTGGCGGTGGTGGGCGCGGTGACGGCGGTGGCG 1080 consensus_6210#1 AAGCGCGCGGCGGTGCAGGCGAGCCGCGTGGCGGTGGTGGGCGCGGTGACGGCGGTGGCG 274 ********* ************ ************************************* consensus_6210#0 TGCTTCGTGCCGGCGTTCGGGGAGTTCGCGGCGTTCGTGGGGAGCACGGTGTGTGCGCTG 1140 consensus_6210#1 TGCTTCGTGCCGGCGTTCGGGGAGTTCGCGGCGTTCGTGGGGAGCACGGTGTGTGCGCTG 334 ************************************************************ consensus_6210#0 CTCTCCTTCGTGCTCCCGGCGCTGTTCCACCTCCGCCTCGTCGGAGCGGCGGCGAGCGCG 1200 consensus_6210#1 CTCTCCTTCGTGCTCCCGGCGCTGTTCCACCTCCGCCTCGTCGGAGCGGCGGCGAGCGCG 394 ************************************************************ consensus_6210#0 TGGCGGCGCGCGGTGGACGGCGGCTTCTTGCTCCTTGGGCTGGCCTTCGCGGCCCATGGG 1260 consensus_6210#1 TGGCGGCGCGCGGTGGACGGCGGCTTCTTGCTCCTTGGGCTGGCCTTCGCGGCCCATGGG 454 ************************************************************ consensus_6210#0 CTTTACACGGTTGTCTCGGGCCTCTGAACTGGGCCGTAATGGGCTCTCCTCGCCGTCCAA 1320 consensus_6210#1 CTTTACACGGTTGTCTCGGGCCTCTGAACTGGGCCGTAATGGGCTCTCCTCGCCGTCCAA 514 ************************************************************ consensus_6210#0 TCCCAATCCAGCAGCTTCTCTCTTCCAGTATATATTTTTCCAGACATTTTTCAAGACGTG 1380 consensus_6210#1 TCCCAATCCAGCAGCTTCTCTCTTCCAGTATATATTTTTCCAGACATTTTTCAAGACGTG 574 ************************************************************ consensus_6210#0 TATAATGTACTACACTAGATTAGCATACTAGAATTTTTTTTTTCTTCCAATAATGTAAAA 1440 consensus_6210#1 TATAATGTACTACACTAGATTAGCATACTAGAATTTTTTTTTTCTTCCAATAATGTAAAA 634 ************************************************************ consensus_6210#0 GCGTTACATTTGCAGCTAATTTTGCATGTAGGAACACAATTTCCTTATACTTTTTA--- 1496 consensus_6210#1 GCGTTACATTTGCAGATGATTTTGCATGTAGGAACACAATTTCCTTATAAAAAAAAAGG 693 *************** * ******************************* * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||