cluster # 6216

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Oryza sativa
cluster # 6216 cluster # 6216 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6216#0 length = 1125 sequences # 2

consensus_6216#1 length = 558 sequences # 1
consensus_6216#2 length = 363 sequences # 1

consensusID : consensus_6216#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1125
fasta sequence

                              [ATCAACCAAACAGTATTTTTGACTGAACACACACCAATTAATCATGTGTGCGTTTCAGGTTCAGTCCACTGGTCTGCCAAATTACAACAGAGCTTAAAAACGTTTTAGACCGTCTCCAACAACGCGACGCATACTCATTTATCCGTCGTGCACACTGATTTTGGGTAAAAAAAACAGCCTCCAACGGGAGAGGCAAATACGATACGTATATTGGGTAGCGGCCAAAGCGCTAGGCAAATATCCGTTTCCTCTCTCTACCGACGCAAAACACTGGAACGGAGCTCGCGCAGTCGCGCGGTGGGCCAGGGTGAGGCGGAGCTGGTGCGGCGAGGCGGAGCTCCCGCGGCGGGGCGGGAGCGCCGTCGGGGCGCGGTCGGAGCGCGCCGTCGGGGAGCACCGTCGGGGAGCGTCGTCGGAGCGCGCCGTCGGGGAGGAGGCGTAGTGGGCCCGTAGTGGCGTCAGGGCGGAGTGCGGCCGGCGGGGCGAGTCCGCGGTGGAGCGCGGTCGTCGCAGTTCCCGCTGCTCCGTTCCGAGCATCGCCGCCACGAGGATGAACTGTGCCGCGAGCCGCCGGCGGGTGTGCTCCGCCTGCCACCGCCGCTCCGCCCCGACCACAGCCGTCGCAAGGAGTCGTGCCGCGAGCCGCCAGCGGGCGCACTCCGCCCCGAGCAACGCCGTCGCGAGGATGGGCCGCGCCATAAGCCGCCGGCGGGAGCGTTCCGCCTGGCCATCGCCGCTCCGCCCCTGTGAGGATGAACGGCGCGCATCGCCGCTGCGAGGACGACCTGGAGCCGATGGCCGCCGGAGGGAGGAGGGAGGAGAGACGAGGGCTGGGACCCGCCTGCTCCGCTGATGCCGCTGCCACGACGGGAGGACGAGGTGAAGATAGAAAAAGATTGGGAGCACTGGGTTTGCTGTTGGAGAAGGGAATTTTTGAGTGTCCGACCTTTTTACTGTGCATCACCCAATCCATGATATGAGTATCTAGAATGGGTCTCCGCTGTTGGAGACGGTCTTAGGTCCCAAGTCCCAACCGTCGGTCTCTGGAGCTGACAAAGATACATTCCAACTGTATGAGAGTACGTAGGCCGTGTTTAGTTTTAAAATATTTCTTTAAACTTTTAA]

[-] EMBL AK107953             [ATCAACCAAACAGTATTTTTGACTGAACACACACCAATTAATCATGTGTGCGTTTCAGGTTCAGTCCACTGGTCTGCCAAATTACAACAGAGCTTAAAAACGTTTTAGACCGTCTCCAACAACGCGACGCATACTCATTTATCCGTCGTGCACACTGATTTTGGGTAAAAAAAACAGCCTCCAACGGGAGAGGCAAATACGATACGTATATTGGGTAGCGGCCAAAGCGCTAGGCAAATATCCGTTTCCTCTCTCTACCGACGCAAAACACTGGAACGGAGCTCGCGCAGTCGCGCGGTGGGCCAGGGTGAGGCGGAGCTGGTGCGGCGAGGCGGAGCTCCCGCGGCGGGGCGGGAGCGCCGTCGGGGCGCGGTCGGAGCGCGCCGTCGGGGAGCACCGTCGGGGAGCGTCGTCGGAGCGCGCCGTCGGGGAGGAGGCGTAGTGGGCCCGTAGTGGCGTCAGGGCGGAGTGCGGCCGGCGGGGCGAGTCCGCGGTGGAGCGCGGTCGTCGCAGTTCCCGCTGCTCCGTTCCGAGCATCGCCGCCACGAGGATGAACTGTGCCGCGAGCCGCCGGCGGGTGTGCTCCGCCTGCCACCGCCGCTCCGCCCCGACCACAGCCGTCGCAAGGAGTCGTGCCGCGAGCCGCCAGCGGGCGCACTCCGCCCCGAGCAACGCCGTCGCGAGGATGGGCCGCGCCATAAGCCGCCGGCGGGAGCGTTCCGCCTGGCCATCGCCGCTCCGCCCCTGTGAGGATGAACGGCGCGCATCGCCGCTGCGAGGACGACCTGGAGCCGATGGCCGCCGGAGGGAGGAGGGAGGAGAGACGAGGGCTGGGACCCGCCTGCTCCGCTGATGCCGCTGCCACGACGGGAGGACGAGGTGAAGA                                                                                                                                                                                                                                               ]
[+] EMBL AK109532             [                                                                                                                                                                                                               ATATTGGGTAGCGGCCAAAGCGCTAGGCAAATATCCGTTTCCTCTCTCTACCGACGCAAAACACTGGAACGGAGCTCGCGCAGTCGCGCGGTGGGCCAGGGTGAGGCGGAGCTGGTGCGGCGAGGCGGAGCTCCCGCGGCGGGGCGGGAGCGCCGTCGGGGCGCGGTCGGAGCGCGCCGTCGGGGAGCACCGTCGGGGAGCGTCGTCGGAGCGCGCCGTCGGGGAGGAGGCGTAGTGGGCCCGTAGTGGCGTCAGGGCGGAGTGCGGCCGGCGGGGCGAGTCCGCGGTGGAGCGCGGTCGTCGCAGTTCCCGCTGCTCCGTTCCGAGCATCGCCGCCACGAGGATGAACTGTGCCGCGAGCCGCCGGCGGGTGTGCTCCGCCTGCCACCGCCGCTCCGCCCCGACCACAGCCGTCGCAAGGAGTCGTGCCGCGAGCCGCCAGCGGGCGCACTCCGCCCCGAGCAACGCCGTCGCGAGGACGGGCCGCGCCATAAGCCGCCGGCGGGAGCGTTCCGCCTGGCCATCGCCGCTCCGCCCCTGTGAGGATGAACGGCGCGCATCGCCGCTGCGAGGACGACCTGGAGCCGATGGCCGCCGGAGGGAGGAGGGAGGAGAGACGAGGGCTGGGACCCGCCTGCTCCGCTGATGCCGCTGCCACGACGGGAGGACGAGGTGAAGATAGAAAAAGATTGGGAGCACTGGGTTTGCTGTTGGAGAAGGGAATTTTTGAGTGTCCGACCTTTTTACTGTGCATCACCCAATCCATGATATGAGTATCTAGAATGGGTCTCCGCTGTTGGAGACGGTCTTAGGTCCCAAGTCCCAACCGTCGGTCTCTGGAGCTGACAAAGATACATTCCAACTGTATGAGAGTACGTAGGCCGTGTTTAGTTTTAAAATATTTCTTTAAACTTTTAA]




>consensus_6216#0
ATCAACCAAACAGTATTTTTGACTGAACACACACCAATTAATCATGTGTGCGTTTCAGGT
TCAGTCCACTGGTCTGCCAAATTACAACAGAGCTTAAAAACGTTTTAGACCGTCTCCAAC
AACGCGACGCATACTCATTTATCCGTCGTGCACACTGATTTTGGGTAAAAAAAACAGCCT
CCAACGGGAGAGGCAAATACGATACGTATATTGGGTAGCGGCCAAAGCGCTAGGCAAATA
TCCGTTTCCTCTCTCTACCGACGCAAAACACTGGAACGGAGCTCGCGCAGTCGCGCGGTG
GGCCAGGGTGAGGCGGAGCTGGTGCGGCGAGGCGGAGCTCCCGCGGCGGGGCGGGAGCGC
CGTCGGGGCGCGGTCGGAGCGCGCCGTCGGGGAGCACCGTCGGGGAGCGTCGTCGGAGCG
CGCCGTCGGGGAGGAGGCGTAGTGGGCCCGTAGTGGCGTCAGGGCGGAGTGCGGCCGGCG
GGGCGAGTCCGCGGTGGAGCGCGGTCGTCGCAGTTCCCGCTGCTCCGTTCCGAGCATCGC
CGCCACGAGGATGAACTGTGCCGCGAGCCGCCGGCGGGTGTGCTCCGCCTGCCACCGCCG
CTCCGCCCCGACCACAGCCGTCGCAAGGAGTCGTGCCGCGAGCCGCCAGCGGGCGCACTC
CGCCCCGAGCAACGCCGTCGCGAGGATGGGCCGCGCCATAAGCCGCCGGCGGGAGCGTTC
CGCCTGGCCATCGCCGCTCCGCCCCTGTGAGGATGAACGGCGCGCATCGCCGCTGCGAGG
ACGACCTGGAGCCGATGGCCGCCGGAGGGAGGAGGGAGGAGAGACGAGGGCTGGGACCCG
CCTGCTCCGCTGATGCCGCTGCCACGACGGGAGGACGAGGTGAAGATAGAAAAAGATTGG
GAGCACTGGGTTTGCTGTTGGAGAAGGGAATTTTTGAGTGTCCGACCTTTTTACTGTGCA
TCACCCAATCCATGATATGAGTATCTAGAATGGGTCTCCGCTGTTGGAGACGGTCTTAGG
TCCCAAGTCCCAACCGTCGGTCTCTGGAGCTGACAAAGATACATTCCAACTGTATGAGAG
TACGTAGGCCGTGTTTAGTTTTAAAATATTTCTTTAAACTTTTAA

consensusID : consensus_6216#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence

                              [GGTGTGCTCCGCCTGCCCACNGCCGTTCCGCCCCGACCACAGCCGTCTCNAGGAGTCGTGCCGCGAGCCACCAGCGGGCGCATTCCGCCCCGAGCAACGCCGTCGCGAGGACGGACCGCGCCACAAGCCGCCGGCGGGAGCGTTCCACCTGGCCATCACCGCTCCGCCCCTGTGAGNATGAACGGCGNGCATCGCCGCCGCGAGGACGACCTGGAGCCGATGGCCGCCGAAGGGAGGAGGGAGGANAGACGAGGGCTGGGACCCGCCTGCTCCGCTGACGCCGCTGCCACGACGGGAGGACGAGGCGAANAGAGAAGAAGATTGGGAGCNCTGGGTAGGCTGTTGGANAAAGGAATTTTTGAGTGTCCGACCTTTTTACTGTGCATCACCCAATCCATGATATGAGTCTCTAGAATGGGTCTCCGCTATTGGAGACAGTNTTAGGGACCATGTTCCATAGTTGAGCCATCGCATGGAGTACAATGGAGTGGAGTACTTCGTTAATGTAGGNCAGTAGGTATTGTCCCGTTCGACAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU100862             [GGTGTGCTCCGCCTGCCCACNGCCGTTCCGCCCCGACCACAGCCGTCTCNAGGAGTCGTGCCGCGAGCCACCAGCGGGCGCATTCCGCCCCGAGCAACGCCGTCGCGAGGACGGACCGCGCCACAAGCCGCCGGCGGGAGCGTTCCACCTGGCCATCACCGCTCCGCCCCTGTGAGNATGAACGGCGNGCATCGCCGCCGCGAGGACGACCTGGAGCCGATGGCCGCCGAAGGGAGGAGGGAGGANAGACGAGGGCTGGGACCCGCCTGCTCCGCTGACGCCGCTGCCACGACGGGAGGACGAGGCGAANAGAGAAGAAGATTGGGAGCNCTGGGTAGGCTGTTGGANAAAGGAATTTTTGAGTGTCCGACCTTTTTACTGTGCATCACCCAATCCATGATATGAGTCTCTAGAATGGGTCTCCGCTATTGGAGACAGTNTTAGGGACCATGTTCCATAGTTGAGCCATCGCATGGAGTACAATGGAGTGGAGTACTTCGTTAATGTAGGNCAGTAGGTATTGTCCCGTTCGACAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_6216#1
GGTGTGCTCCGCCTGCCCACNGCCGTTCCGCCCCGACCACAGCCGTCTCNAGGAGTCGTG
CCGCGAGCCACCAGCGGGCGCATTCCGCCCCGAGCAACGCCGTCGCGAGGACGGACCGCG
CCACAAGCCGCCGGCGGGAGCGTTCCACCTGGCCATCACCGCTCCGCCCCTGTGAGNATG
AACGGCGNGCATCGCCGCCGCGAGGACGACCTGGAGCCGATGGCCGCCGAAGGGAGGAGG
GAGGANAGACGAGGGCTGGGACCCGCCTGCTCCGCTGACGCCGCTGCCACGACGGGAGGA
CGAGGCGAANAGAGAAGAAGATTGGGAGCNCTGGGTAGGCTGTTGGANAAAGGAATTTTT
GAGTGTCCGACCTTTTTACTGTGCATCACCCAATCCATGATATGAGTCTCTAGAATGGGT
CTCCGCTATTGGAGACAGTNTTAGGGACCATGTTCCATAGTTGAGCCATCGCATGGAGTA
CAATGGAGTGGAGTACTTCGTTAATGTAGGNCAGTAGGTATTGTCCCGTTCGACAAAAAA
AAAAAAAAAAAAAAAAAA

consensusID : consensus_6216#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence

                              [TCATCTGTTCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAACGGTCAACCAGTACCACCAGCGGGGCGGAGCTCGTGCAGTCGCGCGGTGGGCCAGGGTGAGGCGGAGCTGGTGCGGCGAGGCGGAGCTCGCACGGCGGGGCGGGAGCGCCGTAGGGGCGCGGTCGGAGCGCGCCGTCAGGGAGCACCGTCGGAGCGCGCCGTCGGGGAGGAGGCGTCCTGCTCCCGTAGTGGCGTCAGGGCGGANTGCGGCCGGCGGGGCGAGTCC]

[+] EMBL AU100861             [TCATCTGTTCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCACTGAAACGGTCAACCAGTACCACCAGCGGGGCGGAGCTCGTGCAGTCGCGCGGTGGGCCAGGGTGAGGCGGAGCTGGTGCGGCGAGGCGGAGCTCGCACGGCGGGGCGGGAGCGCCGTAGGGGCGCGGTCGGAGCGCGCCGTCAGGGAGCACCGTCGGAGCGCGCCGTCGGGGAGGAGGCGTCCTGCTCCCGTAGTGGCGTCAGGGCGGANTGCGGCCGGCGGGGCGAGTCC]




>consensus_6216#2
TCATCTGTTCGTAAATACGGTTCAATGAACGGTATTGCTGAACGGTGCCTTTACCAAACG
TCGGTTCACCCACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTG
AAGCCGAAGCACTGAAACGGTCAACCAGTACCACCAGCGGGGCGGAGCTCGTGCAGTCGC
GCGGTGGGCCAGGGTGAGGCGGAGCTGGTGCGGCGAGGCGGAGCTCGCACGGCGGGGCGG
GAGCGCCGTAGGGGCGCGGTCGGAGCGCGCCGTCAGGGAGCACCGTCGGAGCGCGCCGTC
GGGGAGGAGGCGTCCTGCTCCCGTAGTGGCGTCAGGGCGGANTGCGGCCGGCGGGGCGAG
TCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6216#0      ATCAACCAAACAGTATTTTTGACTGAACACACACCAATTAATCATGTGTGCGTTTCAGGT 60
consensus_6216#1      ------------------------------------------------------------
consensus_6216#2      ------------------------------------------------------------
                                                                                  

consensus_6216#0      TCAGTCCACTGGTCTGCCAAATTACAACAGAGCTTAAAAACGTTTTAGACCGTCTCCAAC 120
consensus_6216#1      ------------------------------------------------------------
consensus_6216#2      ------------------------------------------------------------
                                                                                  

consensus_6216#0      AACGCGACGCATACTCATTTATCCGTCGTGCACACTGATTTTGGGTAAAAAAAACAGCCT 180
consensus_6216#1      ------------------------------------------------------------
consensus_6216#2      ------------------------------------------------------------
                                                                                  

consensus_6216#0      CCAACGGGAGAGGCAAATACGATACGTATATTGGGTAGCGGCCAAAGCGCTAGGCAAATA 240
consensus_6216#1      ------------------------------------------------------------
consensus_6216#2      ------------------------------------------------------------
                                                                                  

consensus_6216#0      TCCGTTTCCTCTCTCTACCGACGCAAAACACTGGAACGGAGCTCGCGCAGTCGCGCGGTG 300
consensus_6216#1      ------------------------------------------------------------
consensus_6216#2      ------------------------------------------------------------
                                                                                  

consensus_6216#0      GGCCAGGGTGAGGCGGAGCTGGTGCGGCGAGGCGGAGCTCCCGCGGCGGGGCGGGAGCGC 360
consensus_6216#1      ------------------------------------------------------------
consensus_6216#2      ------------------------------------------------------------
                                                                                  

consensus_6216#0      CGTCGGGGCGCGGTCGGAGCGCGCCGTCGGGGAGCACCGTCGGGGAGCGTCGTCGGAGCG 420
consensus_6216#1      ------------------------------------------------------------
consensus_6216#2      ------------------------------------------------------------
                                                                                  

consensus_6216#0      CGCCGTCGGGGAGGAGGCGTAGTGGGCCCGTAGTGGCGTCAGGGCGGAGTGCGGCCGGCG 480
consensus_6216#1      ------------------------------------------------------------
consensus_6216#2      ------------------------------------------------------------
                                                                                  

consensus_6216#0      GGGCGAGTCCGCGGTGGAGCGCGGTCGTCGCAGTTCCCGCTGCTCCGTTCCGAGCATCGC 540
consensus_6216#1      ------------------------------------------------------------
consensus_6216#2      ------------------------------------------------------------
                                                                                  

consensus_6216#0      CGCCACGAGGATGAACTGTGCCGCGAGCCGCCGGCGGGTGTGCTCCGCCTGCC-ACCGCC 599
consensus_6216#1      ------------------------------------GGTGTGCTCCGCCTGCCCACNGCC 24
consensus_6216#2      --------------------------------------------TCATCTGTT---CGTA 13
                                                                   *  ***      *  

consensus_6216#0      GCTCCGCCCCGACCACAGCCGTCGCAAGGAGTCGTGCCGCGAGCCGCCAGCGGGCGCACT 659
consensus_6216#1      GTTCCGCCCCGACCACAGCCGTCTCNAGGAGTCGTGCCGCGAGCCACCAGCGGGCGCATT 84
consensus_6216#2      AATACGGTTCAATG--AACGGTATTGCTGAACGGTGCCTTTACCAAACGTCGGTTCACCC 71
                        * **   * *    * * **      **   *****   * *   *  ***       

consensus_6216#0      CCGCCCCGAGCAACGCCGTCGCGAGGATGGGCCGCGCCATAAGCCGCCG--GCGGGAGCG 717
consensus_6216#1      CCGCCCCGAGCAACGCCGTCGCGAGGACGGACCGCGCCACAAGCCGCCG--GCGGGAGCG 142
consensus_6216#2      ACAACCAGCGCACGACCGTAATCCTGCATTGCCGCGGCAAAGATTTCTGAAGCCGAAGCA 131
                       *  ** * ***   ****      *     ***** ** *     * *  ** * *** 

consensus_6216#0      TTCCGCCTGGCCATCGCCGCTCCGCCCCTGTGAGGATGAACGGCGCGCATCGCCGCTGCG 777
consensus_6216#1      TTCCACCTGGCCATCACCGCTCCGCCCCTGTGAGNATGAACGGCGNGCATCGCCGCCGCG 202
consensus_6216#2      CTGAAACGGTCAACCAGTAC----CACCAGCGGGG-----CGGAGCTCGT-GCAGTCGCG 181
                       *    * * * * *    *    * ** * * *      *** *  * * ** *  ***

consensus_6216#0      AGGACGACCTGGAGCCGATGGCCGCCGGAGGGAGGAGGGAGGAGAGACGAGGGCTGGGAC 837
consensus_6216#1      AGGACGACCTGGAGCCGATGGCCGCCGAAGGGAGGAGGGAGGANAGACGAGGGCTGGGAC 262
consensus_6216#2      ---------------CGGTGG--GCCAGGGTGAGGCGGAGCTGGTGCGGCGAGGCGGAGC 224
                                     ** ***  ***   * **** **       *  * * *  **  *

consensus_6216#0      CCGCCTGCTCCGCTGATGCCGCTGCCACGACGGGAGGACGAGGTGAAGATAGAAAAAGAT 897
consensus_6216#1      CCGCCTGCTCCGCTGACGCCGCTGCCACGACGGGAGGACGAGGCGAANAGAGAAGAAGAT 322
consensus_6216#2      TCGCACGGCGGGGCGGGAGCGCCGTAGGGGCGC--GGTCGGAGCGCGCCGTCAGGGAGCA 282
                       ***  *    *  *    *** *    * **   ** **  * *       *   **  

consensus_6216#0      TGGGAGCACTGGGTTTGCTGTTGGAGAAGGGAATTTTTGAGTGTCCGACCTTTTTACTGT 957
consensus_6216#1      TGGGAGCNCTGGGTAGGCTGTTGGANAAAGGAATTTTTGAGTGTCCGACCTTTTTACTGT 382
consensus_6216#2      CCG----TCGGAGCGCGCCGTCGGGGAGGAGGCGTCCT--GCTCCCGTAGTGGCGTCAGG 336
                        *     * * *   ** ** **  *   *   *  *  *   ***   *     * * 

consensus_6216#0      GCATCACCCAATCCATGATATGAGTATCTAGAATGGGTCTCCGCTGTTGGAGACGGTCTT 1017
consensus_6216#1      GCATCACCCAATCCATGATATGAGTCTCTAGAATGGGTCTCCGCTATTGGAGACAGTNTT 442
consensus_6216#2      GCGGANTGCGGCCGGCGGGGCGAGTCC--------------------------------- 363
                      **      *   *   *    ****                                   

consensus_6216#0      AGGTCCCAAGTCCCAACCGTCGGTCTC----TGGAGC-TGACAAAGATACATTCCAACTG 1072
consensus_6216#1      AGGGACCATGTTCCATAGTTGAGCCATCGCATGGAGTACAATGGAGTGGAGTACTTCGTT 502
consensus_6216#2      ------------------------------------------------------------
                                                                                  

consensus_6216#0      TATGAGAGTACGTAGGCCGTGTTTAGTTTTAAAATATTTCTTTAAACTTTTAA--- 1125
consensus_6216#1      AATGTAGGNCAGTAGGTATTGTCCCGTTCGACAAAAAAAAAAAAAAAAAAAAAAAA 558
consensus_6216#2      --------------------------------------------------------