These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6222#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1531 fasta sequence [CCTGCTCAAACACACACACGGCACTCCATTTTTAACAAGTGTTTTCTCTCTGACAAGCCAGCTGCACTTAAGCATTGCTAGAGCGCTAAGCTACCTGCAGCGTAGTGTAGTGTAGTGTACTGCCATGGCAGTGCGCGTGCTTCTTCCTCCTCCTCGCCGGTGGTTCTTGCTTTCTTCTCTGCTGCTGGTGGTGGCGGCGGCTGTTCCCGTCGTCCATGGATACGGCGGCGGCGGTGGGCTGACGGTCGGGTTCTACAAGGAGTCGTGCCCGGAGGCGGAGAAGATAGTGCGCAAGGTGGTGGCGGCGGCTGTCCATGACGACCCGACCACCACCGCGCCGCTGCTCAGGCTTCACTTCCACGATTGTTTCGTCAGGGGGTGTGAAGGATCGGTGCTGATCAACTCGACCAAGAAGAACACGGCGGAGAAGGACGCCAAGCCGAATCACACGCTGGACGCGTACGACGTCATCGACGCAATCAAGGAGAAGCTGGAGCACAAGTGCCCCGCTACCGTCTCCTGCGCCGACATCCTCGCCATTGCTGCCAGAGACGCCGTCTCCTTGGCAACAAAGGCGGTGAGGCAAGGACGGTGGAGCAAGGACGGCAACTTGTACGAGGTGGAGACCGGCCGGCGAGACGGCCGCGTGTCGAGCGCCAAGGAGGCGGTGACCTACTTGCCCGACTCCTTCGATGGAATTCGCAGGCTCATCACCAGGTTTGCTTCCAAGGGCCTCAGCCTCAAGGATCTGGCTGTTCTGTCAGGCGCCCACGCGCTGGGCAACACGCACTGCCCATCGATAGCGAAGCGTCTGCGCAACTTCACGGCGCACCACAACACGGACCCGACCCTGGATGCGACGTACGCCGCGGGGCTGCGGCGGCAGTGCAGGTCGGCCAAGGACAACACCACCCAGCTGGAGATGGTGCCCGGCAGCTCGACCACCTTCGACGCCACCTACTACGGCCTCGTCGCCGAGCGGAAGGGCATGTTCCACTCCGACGAGGCGCTGCTCCGGAACGACGTTACCAGGGGGCTCGTCTACGAGTACATGAGATCGGAGGAGAGCTTCCTCCGGGACTTTGGCGTGTCAATGGTGAACATGGGCAGGGTGGGCGTGCTCACCGGCAGCCAGGGGGAGATCCGGAGGACATGCGCCCTTGTCAACTAGCAAAAGCTGCTCCATGC-TGATTTGGTGCCCTTCGCCGATATCTCTGTGTACCTGATCACCTAGAGACTAATAGGAGTGTCGTCTGGATTAATTAGGGATTATATTATGTCCAAGTCTGAAATCTATGTGAAACAAATTATTGCCGTTGAAACATTTGCTAGAATTGTAAGAAAAAAAATACGCAATGACGGGGCATCATTCTATTTTAGTTTAAAAAAAATATAAATAATTTTTATATTGGTTTTATTTGCTTTTATTTGTTATTACTATTTTTTTTTTTTCATTTCCCCTGTGGGGCCAGGTCCTATTTCTCTTTAGCGCTATTCCGCTCTCTGCCCGTTTTAAACCTGGCGGTGAAAC] [+] EMBL AK122030 [CCTGCTCAAACACACACACGGCACTCCATTTTTAACAAGTGTTTTCTCTCTGACAAGCCAGCTGCACTTAAGCATTGCTAGAGCGCTAAGCTACCTGCAGCGTAGTGTAGTGTAGTGTACTGCCATGGCAGTGCGCGTGCTTCTTCCTCCTCCTCGCCGGTGGTTCTTGCTTTCTTCTCTGCTGCTGGTGGTGGCGGCGGCTGTTCCCGTCGTCCATGGATACGGCGGCGGCGGTGGGCTGACGGTCGGGTTCTACAAGGAGTCGTGCCCGGAGGCGGAGAAGATAGTGCGCAAGGTGGTGGCGGCGGCTGTCCATGACGACCCGACCACCACCGCGCCGCTGCTCAGGCTTCACTTCCACGATTGTTTCGTCAGGGGGTGTGAAGGATCGGTGCTGATCAACTCGACCAAGAAGAACACGGCGGAGAAGGACGCCAAGCCGAATCACACGCTGGACGCGTACGACGTCATCGACGCAATCAAGGAGAAGCTGGAGCACAAGTGCCCCGCTACCGTCTCCTGCGCCGACATCCTCGCCATTGCTGCCAGAGACGCCGTCTCCTTGGCAACAAAGGCGGTGAGGCAAGGACGGTGGAGCAAGGACGGCAACTTGTACGAGGTGGAGACCGGCCGGCGAGACGGCCGCGTGTCGAGCGCCAAGGAGGCGGTGACCTACTTGCCCGACTCCTTCGATGGAATTCGCAGGCTCATCACCAGGTTTGCTTCCAAGGGCCTCAGCCTCAAGGATCTGGCTGTTCTGTCAGGCGCCCACGCGCTGGGCAACACGCACTGCCCATCGATAGCGAAGCGTCTGCGCAACTTCACGGCGCACCACAACACGGACCCGACCCTGGATGCGACGTACGCCGCGGGGCTGCGGCGGCAGTGCAGGTCGGCCAAGGACAACACCACCCAGCTGGAGATGGTGCCCGGCAGCTCGACCACCTTCGACGCCACCTACTACGGCCTCGTCGCCGAGCGGAAGGGCATGTTCCACTCCGACGAGGCGCTGCTCCGGAACGACGTTACCAGGGGGCTCGTCTACGAGTACATGAGATCGGAGGAGAGCTTCCTCCGGGACTTTGGCGTGTCAATGGTGAACATGGGCAGGGTGGGCGTGCTCACCGGCAGCCAGGGGGAGATCCGGAGGACATGCGCCCTTGTCAACTAGCAAAAGCTGCTCCATGC TGATTTGGTGCCCTTCGCCGATATCTCTGTGTACCTGATCACCTAGAGACTAATAGGAGTGTCGTCTGGATTAATTAGGGATTATATTATGTCCAAGTCTGAAATCTATGTGAAACAAATTATTGCCGTTGAAACATTTGCTAGAATTGTAAGAAAAAAAATACGCAATGACGGGGCATCATTCTATTTTAGTTTAAA ] [+] EMBL AU032130 [ ACTTAAGCATTGCTAGAGCGCTAAGCTACCTGCAGCGTAGTGTAGTGTAGTGTACTGCCATGGCAGTGCGCGTGCTTCTTCCTCCTCCTCGCCGGTGGTTCTTGCTTTCTTCTCTGCTGCTGGTGGTGGCGGCGGCTGTTCCCGTCGTCCATGGATACGGCGGCGGCGGTGGGCTGACGGTCGGGTTCTACAAGGAGTCGTGCCCGGAGGCGGAGAAGATAGTGCGCAAGGTGGTGGCGGCGGCTGTCCATGACGACCCGACCACCACCGCGCCGCTGCTCAGGCTTCACTTCCACGATTGTTTCGTCAGGGGGTGTGAAGGATCGGTGCTGATCAACTCGACCAAGAAGAACACGGCGGAGAAGGACGCCAAGCCGAATCANACGNTGGACGCGTACGACGTNATCGACGAAATCAAGGAGAA NTTGAGCACAAGTGCCC ] [+] EMBL BE039859 [ CGTCTCCTTGGCAACAAAGGCGGTGAGGCAAGGACGGTGGAGCAAGGACGGCAACTTGTACGAGGTGGAGACCGGCCGGCGAGACGGCCGCGTGTCGAGCGCCAAGGAGGCGGTGACCTACTTGCCCGACTCCTTCGATGGAATTCGCAGGCTCATCACCAGGTTTGCTTCCAAGGGCCTCAGCCTCAAGGATCTGGCTGTTCTGTCAGGCGCCCACGCGCTGGGCAACACGCACTGCCCGTCGATAGCGAAGCGTCTGCGCAACTTCACGGCGCACCACAACACGGACCCGACCCTGGACGCGACGTACGCCGCGGGGCTGCGGCGGCAGTGCAGGTCGGCCAAGGACAACACCACCCAGCTGGAGATGGTGCCCGGCAGCTCGACCACCTTCGACGCCACCTACTACGGCCTCGTCGCCGAGCGGAAGGGCATGTTCCACTCCGACGAGGCGCTGCTCCGGAACGACGTTACCAGGGGGCTCGTCTACGAGTACATGAGATCGGAGGAGAGCTTCCTCCGGGACTTTGGCGTGTCAATGGTGAACATGGGCAGGGTGGGCGTGCTCACCGGCAGCCAGGGGGAGATCCGGAGGACATGCGCCCTTGTCAACTAGCAAAAGCTGCTCCATGCTTGA TTGGTGCCCTTCGCCGATATTTCTGTGTACCTGATCACCTAGAGACTAATAGGAGTGTCGTCTGGATTAATTAGGGATTATATTATGGCCAAGTCTGAAATTTATGTG AACAAATTATTGGCGTTGAAACTTTTGCTAG ATTGTAAG AAAAAAATACGCAATGACGGGGCATCATTCTATTTTAAAAAATAAAAAATATAAATAATTTTTATATTGGTTTTATTTGCTTTTATTTGTTATTACTATTTTTTTTTTTTCATTTCCCCTGTGGGGCCAGGTCCTATTTCTCTTTAGCGCTATTCCGCTCTCTGCCCGTTTTAAACCTGGCGGTGAAAC] consensusID : consensus_6222#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence [TGAAGACCGGCCCGGCGAANACGGCCCGCTTTTCGAAGCGCCAAGGAGGCGTTGACCTACTTGCCCCGANTCCTTTCGATGGAATTCGCAGGCTCATCACCAGGTTTGCTTCCAAGGCCTCAGCCTCAAGGATCTGGCTGTTCTGTCAGGCGCCCACGCGCTGGGCAACACGCACTGCCCATCGATAGCGAAGCGTCTGCGCAACTTCACGGCGCACCACAACACGGACCCGACCCTGGATGCGACGTAACGCCGCGGGGCTGCGGCGGCAGTGCAGGTCGGCCAAGGACAACACCACCCAGCTGGAGATGGTGCCCGGCAGCTCGACCACCTTCGACGCCACCTACTACGGCCTCGTCGCCGAGCGGAAGGGCATGTTCCACTCCGACGAGGCGCTGCTCCGGAACGACGTTACCAGGGGGCTCGTCTACGAGTACATGAGATCGGAGGAGAGCTTCCTCCGGGACTTTGGCGTGTCAATGGTGAACATGGGCAGGGTGGGCGTGCTCACCGGCAGCCAGGGGGAGATCCGGAGGACATGCGCCCTTGTCAACTAGCAAAAGCTGCTCCATGCTGATTTGGTGCCCTTCGCCGATATCTCTGTGTACCTGATCACCTAGAGACTAATAGGAGTGTCGTCTGGATTAATTAGGGATTATATTATGTCCAAGTCTGAAATCTATGTGAAACAAATTATTGCCGTTGAAACATTTGCTAGAATTGTAAGAAAAAAAATACGCAATGACGGGGCATCATTCTATTTTAGTTTAAAATTCTATTTTAACAAAAAAAA] [+] EMBL AU032131 [TGAAGACCGGCCCGGCGAANACGGCCCGCTTTTCGAAGCGCCAAGGAGGCGTTGACCTACTTGCCCCGANTCCTTTCGATGGAATTCGCAGGCTCATCACCAGGTTTGCTTCCAAGGCCTCAGCCTCAAGGATCTGGCTGTTCTGTCAGGCGCCCACGCGCTGGGCAACACGCACTGCCCATCGATAGCGAAGCGTCTGCGCAACTTCACGGCGCACCACAACACGGACCCGACCCTGGATGCGACGTAACGCCGCGGGGCTGCGGCGGCAGTGCAGGTCGGCCAAGGACAACACCACCCAGCTGGAGATGGTGCCCGGCAGCTCGACCACCTTCGACGCCACCTACTACGGCCTCGTCGCCGAGCGGAAGGGCATGTTCCACTCCGACGAGGCGCTGCTCCGGAACGACGTTACCAGGGGGCTCGTCTACGAGTACATGAGATCGGAGGAGAGCTTCCTCCGGGACTTTGGCGTGTCAATGGTGAACATGGGCAGGGTGGGCGTGCTCACCGGCAGCCAGGGGGAGATCCGGAGGACATGCGCCCTTGTCAACTAGCAAAAGCTGCTCCATGCTGATTTGGTGCCCTTCGCCGATATCTCTGTGTACCTGATCACCTAGAGACTAATAGGAGTGTCGTCTGGATTAATTAGGGATTATATTATGTCCAAGTCTGAAATCTATGTGAAACAAATTATTGCCGTTGAAACATTTGCTAGAATTGTAAGAAAAAAAATACGCAATGACGGGGCATCATTCTATTTTAGTTTAAAATTCTATTTTAACAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6222#0 CCTGCTCAAACACACACACGGCACTCCATTTTTAACAAGTGTTTTCTCTCTGACAAGCCA 60 consensus_6222#1 ------------------------------------------------------------ consensus_6222#0 GCTGCACTTAAGCATTGCTAGAGCGCTAAGCTACCTGCAGCGTAGTGTAGTGTAGTGTAC 120 consensus_6222#1 ------------------------------------------------------------ consensus_6222#0 TGCCATGGCAGTGCGCGTGCTTCTTCCTCCTCCTCGCCGGTGGTTCTTGCTTTCTTCTCT 180 consensus_6222#1 ------------------------------------------------------------ consensus_6222#0 GCTGCTGGTGGTGGCGGCGGCTGTTCCCGTCGTCCATGGATACGGCGGCGGCGGTGGGCT 240 consensus_6222#1 ------------------------------------------------------------ consensus_6222#0 GACGGTCGGGTTCTACAAGGAGTCGTGCCCGGAGGCGGAGAAGATAGTGCGCAAGGTGGT 300 consensus_6222#1 ------------------------------------------------------------ consensus_6222#0 GGCGGCGGCTGTCCATGACGACCCGACCACCACCGCGCCGCTGCTCAGGCTTCACTTCCA 360 consensus_6222#1 ------------------------------------------------------------ consensus_6222#0 CGATTGTTTCGTCAGGGGGTGTGAAGGATCGGTGCTGATCAACTCGACCAAGAAGAACAC 420 consensus_6222#1 ------------------------------------------------------------ consensus_6222#0 GGCGGAGAAGGACGCCAAGCCGAATCACACGCTGGACGCGTACGACGTCATCGACGCAAT 480 consensus_6222#1 ------------------------------------------------------------ consensus_6222#0 CAAGGAGAAGCTGGAGCACAAGTGCCCCGCTACCGTCTCCTGCGCCGACATCCTCGCCAT 540 consensus_6222#1 ------------------------------------------------------------ consensus_6222#0 TGCTGCCAGAGACGCCGTCTCCTTGGCAACAAAGGCGGTGAGGCAAGGACGGTGGAGCAA 600 consensus_6222#1 ------------------------------------------------------------ consensus_6222#0 GGACGGCAACTTGTACGAGGTGGAGACCGGCC-GGCGA-GACGGCC-GCGTGTCGA-GCG 656 consensus_6222#1 --------------------TGAAGACCGGCCCGGCGAANACGGCCCGCTTTTCGAAGCG 40 ** ********* ***** ****** ** * **** *** consensus_6222#0 CCAAGGAGGCGGTGACCTACTTGCCC-GACTCCTT-CGATGGAATTCGCAGGCTCATCAC 714 consensus_6222#1 CCAAGGAGGCGTTGACCTACTTGCCCCGANTCCTTTCGATGGAATTCGCAGGCTCATCAC 100 *********** ************** ** ***** ************************ consensus_6222#0 CAGGTTTGCTTCCAAGGGCCTCAGCCTCAAGGATCTGGCTGTTCTGTCAGGCGCCCACGC 774 consensus_6222#1 CAGGTTTGCTTCCAAGG-CCTCAGCCTCAAGGATCTGGCTGTTCTGTCAGGCGCCCACGC 159 ***************** ****************************************** consensus_6222#0 GCTGGGCAACACGCACTGCCCATCGATAGCGAAGCGTCTGCGCAACTTCACGGCGCACCA 834 consensus_6222#1 GCTGGGCAACACGCACTGCCCATCGATAGCGAAGCGTCTGCGCAACTTCACGGCGCACCA 219 ************************************************************ consensus_6222#0 CAACACGGACCCGACCCTGGATGCGACGTA-CGCCGCGGGGCTGCGGCGGCAGTGCAGGT 893 consensus_6222#1 CAACACGGACCCGACCCTGGATGCGACGTAACGCCGCGGGGCTGCGGCGGCAGTGCAGGT 279 ****************************** ***************************** consensus_6222#0 CGGCCAAGGACAACACCACCCAGCTGGAGATGGTGCCCGGCAGCTCGACCACCTTCGACG 953 consensus_6222#1 CGGCCAAGGACAACACCACCCAGCTGGAGATGGTGCCCGGCAGCTCGACCACCTTCGACG 339 ************************************************************ consensus_6222#0 CCACCTACTACGGCCTCGTCGCCGAGCGGAAGGGCATGTTCCACTCCGACGAGGCGCTGC 1013 consensus_6222#1 CCACCTACTACGGCCTCGTCGCCGAGCGGAAGGGCATGTTCCACTCCGACGAGGCGCTGC 399 ************************************************************ consensus_6222#0 TCCGGAACGACGTTACCAGGGGGCTCGTCTACGAGTACATGAGATCGGAGGAGAGCTTCC 1073 consensus_6222#1 TCCGGAACGACGTTACCAGGGGGCTCGTCTACGAGTACATGAGATCGGAGGAGAGCTTCC 459 ************************************************************ consensus_6222#0 TCCGGGACTTTGGCGTGTCAATGGTGAACATGGGCAGGGTGGGCGTGCTCACCGGCAGCC 1133 consensus_6222#1 TCCGGGACTTTGGCGTGTCAATGGTGAACATGGGCAGGGTGGGCGTGCTCACCGGCAGCC 519 ************************************************************ consensus_6222#0 AGGGGGAGATCCGGAGGACATGCGCCCTTGTCAACTAGCAAAAGCTGCTCCATGCTGATT 1193 consensus_6222#1 AGGGGGAGATCCGGAGGACATGCGCCCTTGTCAACTAGCAAAAGCTGCTCCATGCTGATT 579 ************************************************************ consensus_6222#0 TGGTGCCCTTCGCCGATATCTCTGTGTACCTGATCACCTAGAGACTAATAGGAGTGTCGT 1253 consensus_6222#1 TGGTGCCCTTCGCCGATATCTCTGTGTACCTGATCACCTAGAGACTAATAGGAGTGTCGT 639 ************************************************************ consensus_6222#0 CTGGATTAATTAGGGATTATATTATGTCCAAGTCTGAAATCTATGTGAAACAAATTATTG 1313 consensus_6222#1 CTGGATTAATTAGGGATTATATTATGTCCAAGTCTGAAATCTATGTGAAACAAATTATTG 699 ************************************************************ consensus_6222#0 CCGTTGAAACATTTGCTAGAATTGTAAGAAAAAAAATACGCAATGACGGGGCATCATTCT 1373 consensus_6222#1 CCGTTGAAACATTTGCTAGAATTGTAAGAAAAAAAATACGCAATGACGGGGCATCATTCT 759 ************************************************************ consensus_6222#0 ATTTTAGTTTAAAAAAA-ATATAAATAATTTTTATATTGGTTTTATTTGCTTTTATTTGT 1432 consensus_6222#1 ATTTTAGTTTAAAATTCTATTTTAACAAAAAAAA-------------------------- 793 ************** ** * ** ** * consensus_6222#0 TATTACTATTTTTTTTTTTTCATTTCCCCTGTGGGGCCAGGTCCTATTTCTCTTTAGCGC 1492 consensus_6222#1 ------------------------------------------------------------ consensus_6222#0 TATTCCGCTCTCTGCCCGTTTTAAACCTGGCGGTGAAAC 1531 consensus_6222#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||