These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [TCCCCCAAATTTGATACGCGCCGGCGGCGGCGACGACGGGGGCTGCGGCGGCGGCGGCGGCTCTTCTTCTCCGCCCTATCCCGTTCTCGGAGATGGGCTAGGGACGGGATGGGATGGGATGGCGTCTCCTGCTGCGCTCGCCGGAGATGGCTCCGCCTCGCCGAGCAGGAGTTAGTTGATGGATATATAATGCCTTGATCAAATCTTTGAGTACCTACTTCCTAGGAGCTTTGGAGATCTGCAGCGAATTCATACTTTTAACAAATACTCCCTCCCGTCTCAAATAGCTGTCACTGTTAACCAGTATAATTTTAGCTTTGATTATCAGTAAGTTTTGAATGGTTTTATAATGATGGATGGAAGTTTCATGATTATATTTAGGATACATCACACGTCTATAATATAGAATGCTCTTAAGTATTTATACATCTTCTTCCAATAAGAAGAGCTGTCAAAGTTTAAAGATGAACAGTACCCTGTGATAGGTATTTGAGGACAGATGGAGTATGCATGCTTTCATTTTATTTTCCCTAACTGCTAATACTTGTATGTATATGTTGATAACCTTCACACTCAATCATTTTGAACTG] [+] EMBL CA765350 [TCCCCCAAATTTGATACGCGCCGGCGGCGGCGACGACGGGGGCTGCGGCGGCGGCGGCGGCTCTTCTTCTCCGCCCTATCCCGTTCTCGGAGATGGGCTAGGGACGGGATGGGATGGGATGGCGTCTCCTGCTGCGCTCGCCGGAGATGGCTCCGCCTCGCCGAGCAGGAGTTAGTTGATGGATATATAATGCCTTGATCAAATCTTTGAGTACCTACTTCCTAGGAGCTTTGGAGATCTGCAGCGAATTCATACTTTTAACAAATACTCCCTCCCGTCTCAAATAGCTGTCACTGTTAACCAGTATAATTTTAGCTTTGATTATCAGTAAGTTTTGAATGGTTTTATAATGATGGATGGAAGTTTCATGATTATATTTAGGATACATCACACGTCTATAATATAGAATGCTCTTAAGTATTTATACATCTTCTTCCAATAAGAAGAGCTGTCAAAGTTTAAAGATGAACAGTACCCTGTGATAGGTATTTGAGGACAGATGGAGTATGCATGCTTTCATTTTATTTTCCCTAACTGCTAATACTTGTATGTATATGTTGATAACCTTCACACTCAATCATTTTGAACTG] consensusID : consensus_623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [CTCCATGGCCAACGCCCAACGGAAACAAATCCCCCAAATTTGATACGCGCCGGCGGCGGCGACGACGGGGGCTGCGGCGGCGGCGGCGGCTCTTCTTCTCCGCCCTATCCCGTTCTCGGAGATGGGCTAGGGACGGGATGGGATGGGATGGCGTCTCCTGCTGCGCTCGCCGGAGATGGCTCCGCCTCGCCGAGCAGCAAACAGTTATCCAAGGTTGTTTTGGAGTGAAGGCAGATAACCACCTAGGTCACAAAAACAGATGGTATGGAGAGAGTTCTACAAAGTGACATACATCGTAACAATTTCTACCAATATGGCACAGGGTGGCGAATCCTATTTAGACAGCCTCAGAAGCTTGCTTCAGATGATGTAAAGTC] [+] EMBL CB638794 [CTCCATGGCCAACGCCCAACGGAAACAAATCCCCCAAATTTGATACGCGCCGGCGGCGGCGACGACGGGGGCTGCGGCGGCGGCGGCGGCTCTTCTTCTCCGCCCTATCCCGTTCTCGGAGATGGGCTAGGGACGGGATGGGATGGGATGGCGTCTCCTGCTGCGCTCGCCGGAGATGGCTCCGCCTCGCCGAGCAGCAAACAGTTATCCAAGGTTGTTTTGGAGTGAAGGCAGATAACCACCTAGGTCACAAAAACAGATGGTATGGAGAGAGTTCTACAAAGTGACATACATCGTAACAATTTCTACCAATATGGCACAGGGTGGCGAATCCTATTTAGACAGCCTCAGAAGCTTGCTTCAGATGATGTAAAGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_623#0 -----------------------------TCCCCCAAATTTGATACGCGCCGGCGGCGGC 31 consensus_623#1 CTCCATGGCCAACGCCCAACGGAAACAAATCCCCCAAATTTGATACGCGCCGGCGGCGGC 60 ******************************* consensus_623#0 GACGACGGGGGCTGCGGCGGCGGCGGCGGCTCTTCTTCTCCGCCCTATCCCGTTCTCGGA 91 consensus_623#1 GACGACGGGGGCTGCGGCGGCGGCGGCGGCTCTTCTTCTCCGCCCTATCCCGTTCTCGGA 120 ************************************************************ consensus_623#0 GATGGGCTAGGGACGGGATGGGATGGGATGGCGTCTCCTGCTGCGCTCGCCGGAGATGGC 151 consensus_623#1 GATGGGCTAGGGACGGGATGGGATGGGATGGCGTCTCCTGCTGCGCTCGCCGGAGATGGC 180 ************************************************************ consensus_623#0 TCCGCCTCGCCGAGCAGGAGTTAGTTGATGGATAT-ATAATGCCTTGATCAAATCTTTGA 210 consensus_623#1 TCCGCCTCGCCGAGCAGCAAACAGTTATCCAAGGTTGTTTTGGAGTGA--AGGCAGATAA 238 ***************** * **** * * * ** *** * * * consensus_623#0 GTACCTACTTCCTAGGAGCTTTGGAGATCTGCAGCGAATTCATACTTTTAACAAATACTC 270 consensus_623#1 CCACCTAGGTCACAAAAACA--GATGGTATGGAGAGAGTTCTACAAAGTGACATACA-TC 295 ***** ** * * * * * * ** ** ** *** * *** * * ** consensus_623#0 CCTCCCGTCTCAAATAGC-TGTCACTGT-TAACCAGTATAATTTTAGCTTTGATTATCAG 328 consensus_623#1 GTAACAATTTCTACCAATATGGCACAGGGTGGCGAATCCTATTT-AGACAGCCTCAGAAG 354 * * ** * * ** *** * * * * * **** ** * * ** consensus_623#0 TAAGTTTTGAATGGTTTTATAATGATGGATGGAAGTTTCATGATTATATTTAGGATACAT 388 consensus_623#1 CTTGCTTCAGATGATGTAAAGTC------------------------------------- 377 * ** *** * * * consensus_623#0 CACACGTCTATAATATAGAATGCTCTTAAGTATTTATACATCTTCTTCCAATAAGAAGAG 448 consensus_623#1 ------------------------------------------------------------ consensus_623#0 CTGTCAAAGTTTAAAGATGAACAGTACCCTGTGATAGGTATTTGAGGACAGATGGAGTAT 508 consensus_623#1 ------------------------------------------------------------ consensus_623#0 GCATGCTTTCATTTTATTTTCCCTAACTGCTAATACTTGTATGTATATGTTGATAACCTT 568 consensus_623#1 ------------------------------------------------------------ consensus_623#0 CACACTCAATCATTTTGAACTG 590 consensus_623#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||