These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1482 fasta sequence [TCAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCCTGATTAATGTCTCCCCATATGGGACGTTTCACCACGTCGGGCTAAATTAAAAGCATCGGATTTTTTTACACCATTATTTTTGTGAGCACCAAGAAATACAATGGAATTTCTACCTCCGTAAAAGCCATTTGGGTATTGGGTAAAGATATAAAAAACTGCCTCAATTTTTCTCTACCTTGATGATCATGCCACAAAAGCCTTAAAAATTTCAACAGAAGACCTTCGATACAGAATGAACATTAGATGTACATCTCTAGGGACATGTGGATCCAGACCCTAGGGATGCCGACCAGTTGGATCTCCTGCTTCCACATTCGGTGAAAAATTGCACATTCCACACAAGATAC-------AGATGCCAAAGTCAGTCCGTCAAAATCATGTCAGTTGCATATGCAATGCCAAAATTGATAAAGGGCTCCTGTCCTGCTCCATTGAAATCTCTACTTGTAGCCGACTTCTTTCATCAAGTGTCGATACTTCGCCCACGTATCGCACGTTGCCATAAGAATGCTATTGATTCTTGAAAGCTCAATTGTAACCTCTGCTGAACAAGCCATCGAGCAAGGCAACGCTGAATTCCTCGAGTGATTGGCCGCATGAAGGATGGATCTCTTTGTTGATAAAGTAAACCAACCTCTGACATGGCGAGTGCAGCAGGATCATCAAATATTTCCAGGCTGTCATCTGCTAGATAATTCACCCCGAACTCAGTGTTTACAAAAGATTGCACGAAATCCATTAGTTGAATCTTTGCCCACTTATAGGATGCATCAGGGTTACCCCCCTGAGGCGGATGTCTCCATGGTGCACCGAAAGACAATCTATTTTCTGGTACTTTTCCCTCACGGACATCAGATGCGAACTTCTGTACCATTCCTAATGCTGCCTCCATTGCAGGATTCACAACAGAAACTTGCAAGTGTGCCAGGTATATGTCGATAATTTCCTCGATATTTTGATCATGCAAAACCCCTGTGCTATCTGCATTCTGCTTCAACATGTAAATCTCAGATAATTGCCGTGGGTTTGTCCCAAGAACCTCATCCACAACTTTCCACTACAACTCCTTCTCACTGAAGAATTCAGGGACCATATGCAACTTAGCTTCCTGTGGTGTCCAACCAAATGTCTCACGAGAAATGAATATATTAGGAAAACCAAAATCAACAAATGCTTGTGAAGAATAGTAGCCATCTGAGGTAGACATAATGACCGGCAAGCACTGTTCGTTGGCACCGAGTGCGATCACCCTCCAAATCAAGCTATCATGATACATTGCCGCAGGCACCATCGTATCATCCTTGCAAGTCGCCTTCCTCAGCACATCCACATTGTTCAGCACCAGCTTTGGCTGAAAGAAATCCACCTCAGCCGCACCCGAGAGCACATCCAGCAACAGGCATGGCCAGTCGGTTGCGGAATTGGCCAGTGGCCTCGAGAACCGGCCA] [+] EMBL CF322473 [TCAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCCTGATTAATGTCTCCCCATATGGGACGTTTCACCACGTCGGGCTAAATTAAAAGCATCGGATTTTTTTACACCATTATTTTTGTGAGCACCAAGAAATACAATGGAATTTCTACCTCCGTAAAAGCCATTTGGGTATTGGGTAAAGATATAAAAAACTGCCTCAATTTTTCTCTACCTTGATGATCATGCCACAAAAGCCTTAAAAATTTCAACAGAAGACCTTCGATACAGAATGAACATTAGATGTACATCTCTAGGGACATGTGGATCCAGACCCTAGGGATGCCGACCAGTTGGATCTCCTGCTTCCACATTCGGTGAAAAATTGCACATTCCACACAAGATAC AGATGCCAAAGTCAGTCCGTCAAAATCATGTCAGTTGCATATGCAATGCCAAAATTGATAAAGGGCTCCTGTCCTGCTCCATTGAA ] [-] EMBL OS0671A [ gatTGTACATCTCTAGGGACATGTGGATCCAGACCCTAGGGATGCCGACCAGTTGGATCTCCTGCTTCCACATTCGGTGAAAAATTGCACATTCAACACAAGATACCTGAAATAGATGCAAAAGTCAGTCCGTCAAAATCATGTCAGTTGCATATGCAATGCCAAAATTGATAAAGGGCTCCTGTCCTGCTCCATTGAAATCTCTACTTGTAGCCGACTTCTTTCATCAAGTGTCGATACTTCGCCCACGTATCGCACGTTGCCATAAGAATGCTATTGATTCTTGAAAGCTCAATTGTAACCTCTGCTGAACAAGCCATCGAGCAAGGCAACGCTGAATTCCTCGAGTGATTGGCCGCATGAAGGATGGATCTCTTTGTTGATAAAGTAAACCAACCTCTGACATGGCGAGTGCAGCAGGATCATCAAATATT ] [+] EMBL CB668828 [ CGCATGAAGGATGGATCTCTTTGTTGATAAAGTAAACCAACCTCTGACATGGCGAGTGCAGCAGGATCATCAAATATTTCCAGGCTGTCATCTGCTAGATAATTCACCCCGAACTCAGTGTTTACAAAAGATTGCACGAAATCCATTAGTTGAATCTTTGCCCACTTATAGGATGCATCAGGGTTACCCCCCTGAGGCGGATGTCTCCATGGTGCACCGAAAGACAATCTATTTTCTGGTACTTTTCCCTCACGGACATCAGATGCGAACTTCTGTACCATTCCTAATGCTGCCTCCATTGCAGGATTCACAACAGAAACTTGCAAGTGTGCCAGGTATATGTCGATAATTTCCTCGATATTTTGATCATGCAAAACCCCTGTGCTATCTGCATTCTGCTTCAACATGTAAATCTCAGATAATTGCCGTGGGTTTGTCCCAAGAACCTCATCCACAACTTTCCACTACAACTCCTTCTCACTGAAGAATTCAGGGACCATATGCAACTTAGCTTCCTGTGGTGTCCAACCAAATGTCTCACGAGAAATGAATATATTAGGAAAACCAAAATCAACAAATGCTTGTGAAGAATAGTAGCCATCTGAGGTAGACATAATGACCGGCAAGCACTGTTCGTTGGCACCGAGTGCGATCACCCTCCAAATCAAGCTATCATGATACATTGCCGCAGGCACCATCGTATCATCCTTGCAAGTCGCCTTCCTCAGCACATCCACATTGTTCAGCACCAGCTTTGGCTGAAAGAAATCCACCTCAGCCGCACCCGAGAGCACATCCAGCAACAGGCATGGCCAGTCGGTTGCGGAATTGGCCAGTGGCCTCGAGAACCGGCCA] consensusID : consensus_6245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence [ATGTCTCCCCATATGGGACGTTNCACCACGTCGGGCTAAATTAGAAGCATCGGATTTTTTTACNCCCATTATTTTGTGAGCACCCAAGAAATACAATGGAATTTCTACCTCCGTAAAAGCCATTTGGGTATTGGGTAAAGATATAAAAAACTACCTCAATTTTTCTCTACCTTGATGATCATGCAACAAAAGCATAAAAAATTTCAACAGAAGACCTTTGATACAGAATGAACATTAGATGTACATCTCTAGGGACATGTGGATCCAGACCCTAGGGATGCCGACCAGTTGGATCTCCTGCTAAAATTGCACATTCAACACAAGATACCTGAAATAGATGCAAAAGTCAGTCCGTCAAAATCATGTCAGTTGCATATGCAATGCCAAAATTGATAAAGGGCTCCTGTCCTGCTCCATTGAAATCTCTACTTGTAGCCGACTTCTTTCATCAAGTGTCGATAGCTTCGCCCACGTATCGCGCGTTGCCATAAGAATGCTATTGATTCTTGAAAGCTCAATTGTAACCTCTGCTGAACAAGCCATCGAGCAAGGCAACGCTGAATTCCTCGAGTGATTGGCCGCATGAAGGATGGATCTCTTTGTTGATAAAGTAAACCAACCTCTGACATGGCGAGTGCAGCAGGATCATCAAATATTTCCAGGCTGTCATCTGCTAGATATTCACCCCGAACTCAGTGTTTACAAAAGATTGCACGAAATCCCCCCTT] [-] EMBL CA765718 [ATGTCTCCCCATATGGGACGTTNCACCACGTCGGGCTAAATTAGAAGCATCGGATTTTTTTACNCCCATTATTTTGTGAGCACCCAAGAAATACAATGGAATTTCTACCTCCGTAAAAGCCATTTGGGTATTGGGTAAAGATATAAAAAACTACCTCAATTTTTCTCTACCTTGATGATCATGCAACAAAAGCATAAAAAATTTCAACAGAAGACCTTTGATACAGAATGAACATTAGATGTACATCTCTAGGGACATGTGGATCCAGACCCTAGGGATGCCGACCAGTTGGATCTCCTGCTAAAATTGCACATTCAACACAAGATACCTGAAATAGATGCAAAAGTCAGTCCGTCAAAATCATGTCAGTTGCATATGCAATGCCAAAATTGATAAAGGGCTCCTGTCCTGCTCCATTGAAATCTCTACTTGTAGCCGACTTCTTTCATCAAGTGTCGATAGCTTCGCCCACGTATCGCGCGTTGCCATAAGAATGCTATTGATTCTTGAAAGCTCAATTGTAACCTCTGCTGAACAAGCCATCGAGCAAGGCAACGCTGAATTCCTCGAGTGATTGGCCGCATGAAGGATGGATCTCTTTGTTGATAAAGTAAACCAACCTCTGACATGGCGAGTGCAGCAGGATCATCAAATATTTCCAGGCTGTCATCTGCTAGATATTCACCCCGAACTCAGTGTTTACAAAAGATTGCACGAAATCCCCCCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6245#0 TCAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCCTGATTAATGTCTCCCCATATGGG 60 consensus_6245#1 -------------------------------------------ATGTCTCCCCATATGGG 17 ***************** consensus_6245#0 ACGTTTCACCACGTCGGGCTAAATTAAAAGCATCGGATTTTTTTACACCATTATTTTTGT 120 consensus_6245#1 ACGTTNCACCACGTCGGGCTAAATTAGAAGCATCGGATTTTTTTACNCCCATTATTTTGT 77 ***** ******************** ******************* ** * ****** consensus_6245#0 GAGCACC-AAGAAATACAATGGAATTTCTACCTCCGTAAAAGCCATTTGGGTATTGGGTA 179 consensus_6245#1 GAGCACCCAAGAAATACAATGGAATTTCTACCTCCGTAAAAGCCATTTGGGTATTGGGTA 137 ******* **************************************************** consensus_6245#0 AAGATATAAAAAACTGCCTCAATTTTTCTCTACCTTGATGATCATGCCACAAAAGCCTTA 239 consensus_6245#1 AAGATATAAAAAACTACCTCAATTTTTCTCTACCTTGATGATCATGCAACAAAAGCATAA 197 *************** ******************************* ******** * * consensus_6245#0 AAAATTTCAACAGAAGACCTTCGATACAGAATGAACATTAGATGTACATCTCTAGGGACA 299 consensus_6245#1 AAAATTTCAACAGAAGACCTTTGATACAGAATGAACATTAGATGTACATCTCTAGGGACA 257 ********************* ************************************** consensus_6245#0 TGTGGATCCAGACCCTAGGGATGCCGACCAGTTGGATCTCCTGCTTCCACATTCGGTGAA 359 consensus_6245#1 TGTGGATCCAGACCCTAGGGATGCCGACCAGTTGGATCTCCTGCT--------------A 303 ********************************************* * consensus_6245#0 AAATTGCACATTCCACACAAGATAC-------AGATGCCAAAGTCAGTCCGTCAAAATCA 412 consensus_6245#1 AAATTGCACATTCAACACAAGATACCTGAAATAGATGCAAAAGTCAGTCCGTCAAAATCA 363 ************* *********** ****** ********************* consensus_6245#0 TGTCAGTTGCATATGCAATGCCAAAATTGATAAAGGGCTCCTGTCCTGCTCCATTGAAAT 472 consensus_6245#1 TGTCAGTTGCATATGCAATGCCAAAATTGATAAAGGGCTCCTGTCCTGCTCCATTGAAAT 423 ************************************************************ consensus_6245#0 CTCTACTTGTAGCCGACTTCTTTCATCAAGTGTCGATA-CTTCGCCCACGTATCGCACGT 531 consensus_6245#1 CTCTACTTGTAGCCGACTTCTTTCATCAAGTGTCGATAGCTTCGCCCACGTATCGCGCGT 483 ************************************** ***************** *** consensus_6245#0 TGCCATAAGAATGCTATTGATTCTTGAAAGCTCAATTGTAACCTCTGCTGAACAAGCCAT 591 consensus_6245#1 TGCCATAAGAATGCTATTGATTCTTGAAAGCTCAATTGTAACCTCTGCTGAACAAGCCAT 543 ************************************************************ consensus_6245#0 CGAGCAAGGCAACGCTGAATTCCTCGAGTGATTGGCCGCATGAAGGATGGATCTCTTTGT 651 consensus_6245#1 CGAGCAAGGCAACGCTGAATTCCTCGAGTGATTGGCCGCATGAAGGATGGATCTCTTTGT 603 ************************************************************ consensus_6245#0 TGATAAAGTAAACCAACCTCTGACATGGCGAGTGCAGCAGGATCATCAAATATTTCCAGG 711 consensus_6245#1 TGATAAAGTAAACCAACCTCTGACATGGCGAGTGCAGCAGGATCATCAAATATTTCCAGG 663 ************************************************************ consensus_6245#0 CTGTCATCTGCTAGATAATTCACCCCGAACTCAGTGTTTACAAAAGATTGCACGAAATCC 771 consensus_6245#1 CTGTCATCTGCTAGATA-TTCACCCCGAACTCAGTGTTTACAAAAGATTGCACGAAATCC 722 ***************** ****************************************** consensus_6245#0 ATTAGTTGAATCTTTGCCCACTTATAGGATGCATCAGGGTTACCCCCCTGAGGCGGATGT 831 consensus_6245#1 CCCCTT------------------------------------------------------ 728 * consensus_6245#0 CTCCATGGTGCACCGAAAGACAATCTATTTTCTGGTACTTTTCCCTCACGGACATCAGAT 891 consensus_6245#1 ------------------------------------------------------------ consensus_6245#0 GCGAACTTCTGTACCATTCCTAATGCTGCCTCCATTGCAGGATTCACAACAGAAACTTGC 951 consensus_6245#1 ------------------------------------------------------------ consensus_6245#0 AAGTGTGCCAGGTATATGTCGATAATTTCCTCGATATTTTGATCATGCAAAACCCCTGTG 1011 consensus_6245#1 ------------------------------------------------------------ consensus_6245#0 CTATCTGCATTCTGCTTCAACATGTAAATCTCAGATAATTGCCGTGGGTTTGTCCCAAGA 1071 consensus_6245#1 ------------------------------------------------------------ consensus_6245#0 ACCTCATCCACAACTTTCCACTACAACTCCTTCTCACTGAAGAATTCAGGGACCATATGC 1131 consensus_6245#1 ------------------------------------------------------------ consensus_6245#0 AACTTAGCTTCCTGTGGTGTCCAACCAAATGTCTCACGAGAAATGAATATATTAGGAAAA 1191 consensus_6245#1 ------------------------------------------------------------ consensus_6245#0 CCAAAATCAACAAATGCTTGTGAAGAATAGTAGCCATCTGAGGTAGACATAATGACCGGC 1251 consensus_6245#1 ------------------------------------------------------------ consensus_6245#0 AAGCACTGTTCGTTGGCACCGAGTGCGATCACCCTCCAAATCAAGCTATCATGATACATT 1311 consensus_6245#1 ------------------------------------------------------------ consensus_6245#0 GCCGCAGGCACCATCGTATCATCCTTGCAAGTCGCCTTCCTCAGCACATCCACATTGTTC 1371 consensus_6245#1 ------------------------------------------------------------ consensus_6245#0 AGCACCAGCTTTGGCTGAAAGAAATCCACCTCAGCCGCACCCGAGAGCACATCCAGCAAC 1431 consensus_6245#1 ------------------------------------------------------------ consensus_6245#0 AGGCATGGCCAGTCGGTTGCGGAATTGGCCAGTGGCCTCGAGAACCGGCCA 1482 consensus_6245#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||