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Oryza sativa
cluster # 6250 cluster # 6250       Sequences # 4       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6250#0 length = 1434 sequences # 1  
consensus_6250#1 length = 1307 sequences # 1  
consensus_6250#2 length = 819 sequences # 1  
consensus_6250#3 length = 601 sequences # 1  

consensusID : consensus_6250#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1434
fasta sequence
                              [CCGCCACCACCGCAGCGGCGGCGGCGGCGATTCCGGCGAGCCCCTCTCCTCCCGCCTCCGGCCAGTACGCTCCCACCGCGGCGGCCACGGGGAACGGCACGAGCTCCCGCGGCAGGGCGATGGCTGCCGCCCGCTTCGCCGGTGTCCCTCGCCGCGCGGCGCAGTCGTCGTCGTCGTCGTCCCAGGCGCCCCTCGACGAGCCGCCTCCGCCGGCGCTGACGCCCGAGCAGGTCGGTCTATGCAGGGAGGCGCTCGAGTACTTCGAGGGGATGTGTGGCCGGCCGGAAGCCATGTCCGACGAGTTCAGGAGACTCCAGGACACGAGACACGAGCTGATGAGAAGTTCTAATGAAGCTCGTAATGCTGCAAATAGGGAGAAAAACCGCTATATTGATGTCGTACCATTTGATACTACCAGGGTAAGGCTAAAACGATCAACCACCAGTCAGACTTCAAGCAATGATTATATCAATGCAAGCTTTATAAAGGTCACTGAGGACAACAGAGTTGCAAAATTTATTTCCACTCAAGGTCCACTAGCCAAGACATTTGATGATTTCTGGGAAATGGTCTATGAATATCAATGTCCTGTTATTGTTATGCTCACACAATTCGACAGTCTTAAGTGTGATGAATATCTTCCATTACGCAAGCAACGTGAAGCGTATGGAAAGTACAATGTTAAGATTACAAATGCCAAAAGAGATAGCCATCAGTTATGGTTGCGTGATGTGATGGTGCAATGCAACGAGTCAAGCAGGGTTCATTCTGTACGCCATATAGAATATCCTGATTGGCCTGATCATGGAGTTCCAACTAATACTGATGCTGTAAGACAAATTCGAAAATGGTTACAAAATACTCCGATGGAGCATCCTATAGTTGTACACTGCAGTGCGGGCATTGGAAGAACCGGTGCTTACATAACTATCCATAGTACAATTGAGAGACTTCTCCTTGGTGATAAAAGCTCATATCATCTTGATGAAACTGTCAAAACTTTGAGAACCCAACGAGTTGGAATGGTCCAAACTGAGAAACAATACATGTTCTGCTATCGTGCAATTGCTGATGAGCTGAAAGATCTTTTGGAGTCTAACCGCTGAGGTATCCCTAAGGCAGGAATTATGGACATGTCTGTTTATCTCACCCTTAAATTCCTATAATCTGGATGAATGCCTGATTGGAGCACACCATTTCTGCATTGACTGAACCGTTTGAAGCTTAGCACTTTTATTTTGGGTGCACGATTACTTCTGAATAGATTTGACTGCATCAGTACCGCCATGTCACTTTCATTTCATTACCTCTAAATTGTTGTTATTGCTGCTCTCACGGAATTAAAGAGAGTTAGTAGGTTTAGAACTATTGGTGGCATTGTGCCTGTACTTATTGTGCAGCGAAGAATGGTTCATTGCTTGGATTTTAACGGAA]

[+] EMBL AK064263             [CCGCCACCACCGCAGCGGCGGCGGCGGCGATTCCGGCGAGCCCCTCTCCTCCCGCCTCCGGCCAGTACGCTCCCACCGCGGCGGCCACGGGGAACGGCACGAGCTCCCGCGGCAGGGCGATGGCTGCCGCCCGCTTCGCCGGTGTCCCTCGCCGCGCGGCGCAGTCGTCGTCGTCGTCGTCCCAGGCGCCCCTCGACGAGCCGCCTCCGCCGGCGCTGACGCCCGAGCAGGTCGGTCTATGCAGGGAGGCGCTCGAGTACTTCGAGGGGATGTGTGGCCGGCCGGAAGCCATGTCCGACGAGTTCAGGAGACTCCAGGACACGAGACACGAGCTGATGAGAAGTTCTAATGAAGCTCGTAATGCTGCAAATAGGGAGAAAAACCGCTATATTGATGTCGTACCATTTGATACTACCAGGGTAAGGCTAAAACGATCAACCACCAGTCAGACTTCAAGCAATGATTATATCAATGCAAGCTTTATAAAGGTCACTGAGGACAACAGAGTTGCAAAATTTATTTCCACTCAAGGTCCACTAGCCAAGACATTTGATGATTTCTGGGAAATGGTCTATGAATATCAATGTCCTGTTATTGTTATGCTCACACAATTCGACAGTCTTAAGTGTGATGAATATCTTCCATTACGCAAGCAACGTGAAGCGTATGGAAAGTACAATGTTAAGATTACAAATGCCAAAAGAGATAGCCATCAGTTATGGTTGCGTGATGTGATGGTGCAATGCAACGAGTCAAGCAGGGTTCATTCTGTACGCCATATAGAATATCCTGATTGGCCTGATCATGGAGTTCCAACTAATACTGATGCTGTAAGACAAATTCGAAAATGGTTACAAAATACTCCGATGGAGCATCCTATAGTTGTACACTGCAGTGCGGGCATTGGAAGAACCGGTGCTTACATAACTATCCATAGTACAATTGAGAGACTTCTCCTTGGTGATAAAAGCTCATATCATCTTGATGAAACTGTCAAAACTTTGAGAACCCAACGAGTTGGAATGGTCCAAACTGAGAAACAATACATGTTCTGCTATCGTGCAATTGCTGATGAGCTGAAAGATCTTTTGGAGTCTAACCGCTGAGGTATCCCTAAGGCAGGAATTATGGACATGTCTGTTTATCTCACCCTTAAATTCCTATAATCTGGATGAATGCCTGATTGGAGCACACCATTTCTGCATTGACTGAACCGTTTGAAGCTTAGCACTTTTATTTTGGGTGCACGATTACTTCTGAATAGATTTGACTGCATCAGTACCGCCATGTCACTTTCATTTCATTACCTCTAAATTGTTGTTATTGCTGCTCTCACGGAATTAAAGAGAGTTAGTAGGTTTAGAACTATTGGTGGCATTGTGCCTGTACTTATTGTGCAGCGAAGAATGGTTCATTGCTTGGATTTTAACGGAA]


>consensus_6250#0 CCGCCACCACCGCAGCGGCGGCGGCGGCGATTCCGGCGAGCCCCTCTCCTCCCGCCTCCG GCCAGTACGCTCCCACCGCGGCGGCCACGGGGAACGGCACGAGCTCCCGCGGCAGGGCGA TGGCTGCCGCCCGCTTCGCCGGTGTCCCTCGCCGCGCGGCGCAGTCGTCGTCGTCGTCGT CCCAGGCGCCCCTCGACGAGCCGCCTCCGCCGGCGCTGACGCCCGAGCAGGTCGGTCTAT GCAGGGAGGCGCTCGAGTACTTCGAGGGGATGTGTGGCCGGCCGGAAGCCATGTCCGACG AGTTCAGGAGACTCCAGGACACGAGACACGAGCTGATGAGAAGTTCTAATGAAGCTCGTA ATGCTGCAAATAGGGAGAAAAACCGCTATATTGATGTCGTACCATTTGATACTACCAGGG TAAGGCTAAAACGATCAACCACCAGTCAGACTTCAAGCAATGATTATATCAATGCAAGCT TTATAAAGGTCACTGAGGACAACAGAGTTGCAAAATTTATTTCCACTCAAGGTCCACTAG CCAAGACATTTGATGATTTCTGGGAAATGGTCTATGAATATCAATGTCCTGTTATTGTTA TGCTCACACAATTCGACAGTCTTAAGTGTGATGAATATCTTCCATTACGCAAGCAACGTG AAGCGTATGGAAAGTACAATGTTAAGATTACAAATGCCAAAAGAGATAGCCATCAGTTAT GGTTGCGTGATGTGATGGTGCAATGCAACGAGTCAAGCAGGGTTCATTCTGTACGCCATA TAGAATATCCTGATTGGCCTGATCATGGAGTTCCAACTAATACTGATGCTGTAAGACAAA TTCGAAAATGGTTACAAAATACTCCGATGGAGCATCCTATAGTTGTACACTGCAGTGCGG GCATTGGAAGAACCGGTGCTTACATAACTATCCATAGTACAATTGAGAGACTTCTCCTTG GTGATAAAAGCTCATATCATCTTGATGAAACTGTCAAAACTTTGAGAACCCAACGAGTTG GAATGGTCCAAACTGAGAAACAATACATGTTCTGCTATCGTGCAATTGCTGATGAGCTGA AAGATCTTTTGGAGTCTAACCGCTGAGGTATCCCTAAGGCAGGAATTATGGACATGTCTG TTTATCTCACCCTTAAATTCCTATAATCTGGATGAATGCCTGATTGGAGCACACCATTTC TGCATTGACTGAACCGTTTGAAGCTTAGCACTTTTATTTTGGGTGCACGATTACTTCTGA ATAGATTTGACTGCATCAGTACCGCCATGTCACTTTCATTTCATTACCTCTAAATTGTTG TTATTGCTGCTCTCACGGAATTAAAGAGAGTTAGTAGGTTTAGAACTATTGGTGGCATTG TGCCTGTACTTATTGTGCAGCGAAGAATGGTTCATTGCTTGGATTTTAACGGAA



consensusID : consensus_6250#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1307
fasta sequence
                              [CGTCTCCATCGCTTCCGCCACCACCGCAGCGGCGGCGGCGGCGATTCCGGCGAGCCCCTCTCCTCCCGCCTCCGGCCAGTACGCTCCCACCGCGGCGGCCACGGGGAACGGCACGAGCTCCCGCGGCAGGGCGATGGCCGCCGCCCGCTTCGCCGGTGTCCCTCGCCGCGCGGCGCAGTCGTCGTCGTCGTCGTCCCAGGCGCCCCTCGACGAGCCGCCTCCGCCGGCGCTGACGCCCGAGCAGGTCGGTCTATGCAGGGAGGCGCTCGAGTACTTCGAGGGGATGTGTGGCCGGCCGGAAGCCATGTCCGACGAGTTCAGGAGACTCCAGGACACGAGACACGAGCTGATGAGAAGTTCTAATGAAGCTCGTAATGCTGCAAATAGGGAGAAAAACCGCTATATTGATGTCGTACCATTTGATACTACCAGGGTAAGGCTAAAACGATCAACCACCAGTCAGACTTCAAGCAATGATTATATCAATGCAAGCTTTATAAAGGTCACTGAGGACAACAGAGTTGCAAAATTTATTTCCACTCAAGGTCCACTAGCCAAGACATTTGATGATTTCTGGGAAATGGTCTATGAATATCAATGTCCTGTTATTGTTATGCTCACACAATTCGACAGTCTTAAGTGTGATGAATATCTTCCATTACGCAAGCAACGTGAAGCGTATGGAAAGTACAATGTTAAGATTACAAATGCCAAAAGAGATAGCCATCAGTTATGGTTGCGTGATGTGATGGTGCAATGCAACGAGTCAAGCAGGGTTCATTCTGTACGCCATATAGAATATCCTGATTGGCCTGATCATGGAGTTCCAACTAATACTGATGCTGTAAGACAAATTCGAAAATGGTTACAAAATACTCCGATGGAGCATCCTATAGTTGTACACTGCAGTGCGGGCATTGGAAGAACCGGTGCTTACATAACTATCCATAGTACAATTGAGAGACTTCTCCTTGGTGATAAAAGCTCATATCATCTTGATGAAACTGTCAAAACTTTGAGAACCCAACGAGTTGGAATGGTCCAAACTGAGAAACAATACATGTTCTGCTATCGTGCAATTGCTGATGAGCTGAAAGATCTTTTGGAGTCTAACCGCTGAGGTATCCCTAAGGCAGGTAGGTTGCATGATGTGAGACAAAGGGAGTATATAACATCACTGCACAAACATATATGGCCTTATGGCTAAACTATAATTCTCATAGTCTTACTTTATAATTTTACCTTGTAGGAATTATGGACATGTCTGTTTATCTCACCCTTAAATTCCTATAATCTGAATGAATGCC]

[+] EMBL AK106448             [CGTCTCCATCGCTTCCGCCACCACCGCAGCGGCGGCGGCGGCGATTCCGGCGAGCCCCTCTCCTCCCGCCTCCGGCCAGTACGCTCCCACCGCGGCGGCCACGGGGAACGGCACGAGCTCCCGCGGCAGGGCGATGGCCGCCGCCCGCTTCGCCGGTGTCCCTCGCCGCGCGGCGCAGTCGTCGTCGTCGTCGTCCCAGGCGCCCCTCGACGAGCCGCCTCCGCCGGCGCTGACGCCCGAGCAGGTCGGTCTATGCAGGGAGGCGCTCGAGTACTTCGAGGGGATGTGTGGCCGGCCGGAAGCCATGTCCGACGAGTTCAGGAGACTCCAGGACACGAGACACGAGCTGATGAGAAGTTCTAATGAAGCTCGTAATGCTGCAAATAGGGAGAAAAACCGCTATATTGATGTCGTACCATTTGATACTACCAGGGTAAGGCTAAAACGATCAACCACCAGTCAGACTTCAAGCAATGATTATATCAATGCAAGCTTTATAAAGGTCACTGAGGACAACAGAGTTGCAAAATTTATTTCCACTCAAGGTCCACTAGCCAAGACATTTGATGATTTCTGGGAAATGGTCTATGAATATCAATGTCCTGTTATTGTTATGCTCACACAATTCGACAGTCTTAAGTGTGATGAATATCTTCCATTACGCAAGCAACGTGAAGCGTATGGAAAGTACAATGTTAAGATTACAAATGCCAAAAGAGATAGCCATCAGTTATGGTTGCGTGATGTGATGGTGCAATGCAACGAGTCAAGCAGGGTTCATTCTGTACGCCATATAGAATATCCTGATTGGCCTGATCATGGAGTTCCAACTAATACTGATGCTGTAAGACAAATTCGAAAATGGTTACAAAATACTCCGATGGAGCATCCTATAGTTGTACACTGCAGTGCGGGCATTGGAAGAACCGGTGCTTACATAACTATCCATAGTACAATTGAGAGACTTCTCCTTGGTGATAAAAGCTCATATCATCTTGATGAAACTGTCAAAACTTTGAGAACCCAACGAGTTGGAATGGTCCAAACTGAGAAACAATACATGTTCTGCTATCGTGCAATTGCTGATGAGCTGAAAGATCTTTTGGAGTCTAACCGCTGAGGTATCCCTAAGGCAGGTAGGTTGCATGATGTGAGACAAAGGGAGTATATAACATCACTGCACAAACATATATGGCCTTATGGCTAAACTATAATTCTCATAGTCTTACTTTATAATTTTACCTTGTAGGAATTATGGACATGTCTGTTTATCTCACCCTTAAATTCCTATAATCTGAATGAATGCC]


>consensus_6250#1 CGTCTCCATCGCTTCCGCCACCACCGCAGCGGCGGCGGCGGCGATTCCGGCGAGCCCCTC TCCTCCCGCCTCCGGCCAGTACGCTCCCACCGCGGCGGCCACGGGGAACGGCACGAGCTC CCGCGGCAGGGCGATGGCCGCCGCCCGCTTCGCCGGTGTCCCTCGCCGCGCGGCGCAGTC GTCGTCGTCGTCGTCCCAGGCGCCCCTCGACGAGCCGCCTCCGCCGGCGCTGACGCCCGA GCAGGTCGGTCTATGCAGGGAGGCGCTCGAGTACTTCGAGGGGATGTGTGGCCGGCCGGA AGCCATGTCCGACGAGTTCAGGAGACTCCAGGACACGAGACACGAGCTGATGAGAAGTTC TAATGAAGCTCGTAATGCTGCAAATAGGGAGAAAAACCGCTATATTGATGTCGTACCATT TGATACTACCAGGGTAAGGCTAAAACGATCAACCACCAGTCAGACTTCAAGCAATGATTA TATCAATGCAAGCTTTATAAAGGTCACTGAGGACAACAGAGTTGCAAAATTTATTTCCAC TCAAGGTCCACTAGCCAAGACATTTGATGATTTCTGGGAAATGGTCTATGAATATCAATG TCCTGTTATTGTTATGCTCACACAATTCGACAGTCTTAAGTGTGATGAATATCTTCCATT ACGCAAGCAACGTGAAGCGTATGGAAAGTACAATGTTAAGATTACAAATGCCAAAAGAGA TAGCCATCAGTTATGGTTGCGTGATGTGATGGTGCAATGCAACGAGTCAAGCAGGGTTCA TTCTGTACGCCATATAGAATATCCTGATTGGCCTGATCATGGAGTTCCAACTAATACTGA TGCTGTAAGACAAATTCGAAAATGGTTACAAAATACTCCGATGGAGCATCCTATAGTTGT ACACTGCAGTGCGGGCATTGGAAGAACCGGTGCTTACATAACTATCCATAGTACAATTGA GAGACTTCTCCTTGGTGATAAAAGCTCATATCATCTTGATGAAACTGTCAAAACTTTGAG AACCCAACGAGTTGGAATGGTCCAAACTGAGAAACAATACATGTTCTGCTATCGTGCAAT TGCTGATGAGCTGAAAGATCTTTTGGAGTCTAACCGCTGAGGTATCCCTAAGGCAGGTAG GTTGCATGATGTGAGACAAAGGGAGTATATAACATCACTGCACAAACATATATGGCCTTA TGGCTAAACTATAATTCTCATAGTCTTACTTTATAATTTTACCTTGTAGGAATTATGGAC ATGTCTGTTTATCTCACCCTTAAATTCCTATAATCTGAATGAATGCC



consensusID : consensus_6250#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 819
fasta sequence
                              [GCGGCGGCGGCGGCGATTCCGGCGAGCCCCTCTCCTCCCGCCTCCGGCCAGTACGCTCCCACCGCGGCGGCCACGGGGAACGGCACGAGCTCCCGCGGCAGGGCGATGGCCGCCGCCCGCTTCGCCGGTGTCCCTCGCCGCGCGGCGCAGTCGTCGTCGTCGTCGTCCCAGGCGCCCCTCGACGAGCCGCCTCCGCCGGCGCTGACGCCCGAGCAGGTCGGTCTATGCAGGGAGGCGCTCGAGTACTTCGAGGGGATGTGTGGCCGGCCGGAAGCCATGTCCGACGAGTTCAGGAGACTCCAGGTATGTATGTACTGTGTTCGTCCGATTTCCTCGTCGTCGTGATGTGAATGTTTGATTGATAATGTGTTGCTGTTTCCTCCCTAGTTTGGCTAACTACTAGATTGTTCAGGCTAATTCCGTAATTGAATACCTGTTTTAGCGATCCTATATTTTCTGTTTGCATCTTACAATGCAATTTGGTCTGCTTGTTCATAGGTTCTGTATCCCCTTTTGTGTTATGTATGTTAAGTGAGTATAATTTTGCATGTAGGTTTGAAAATTACTGATCATTATTACTGACACACACAGGCTGTGACAGACTAGCATTAAGTGGCTTTTCTGAGTGAAATGAAGAATTGTAATCAAAGTGACAGATGTGCAGTCCAAATTACTTTGGGTTATGCCCTATCTTCACATAATTTATTTGTTGGTGTATTTAGTTATGCTTTGCTTTGAAGTGAAGCACTTTGATTGGGTTGCTTTCAACTGAAGCATTGGGATGTGATGTGATGTGATACAAGTTTCAGTACATGAAGT]

[+] EMBL AK108447             [GCGGCGGCGGCGGCGATTCCGGCGAGCCCCTCTCCTCCCGCCTCCGGCCAGTACGCTCCCACCGCGGCGGCCACGGGGAACGGCACGAGCTCCCGCGGCAGGGCGATGGCCGCCGCCCGCTTCGCCGGTGTCCCTCGCCGCGCGGCGCAGTCGTCGTCGTCGTCGTCCCAGGCGCCCCTCGACGAGCCGCCTCCGCCGGCGCTGACGCCCGAGCAGGTCGGTCTATGCAGGGAGGCGCTCGAGTACTTCGAGGGGATGTGTGGCCGGCCGGAAGCCATGTCCGACGAGTTCAGGAGACTCCAGGTATGTATGTACTGTGTTCGTCCGATTTCCTCGTCGTCGTGATGTGAATGTTTGATTGATAATGTGTTGCTGTTTCCTCCCTAGTTTGGCTAACTACTAGATTGTTCAGGCTAATTCCGTAATTGAATACCTGTTTTAGCGATCCTATATTTTCTGTTTGCATCTTACAATGCAATTTGGTCTGCTTGTTCATAGGTTCTGTATCCCCTTTTGTGTTATGTATGTTAAGTGAGTATAATTTTGCATGTAGGTTTGAAAATTACTGATCATTATTACTGACACACACAGGCTGTGACAGACTAGCATTAAGTGGCTTTTCTGAGTGAAATGAAGAATTGTAATCAAAGTGACAGATGTGCAGTCCAAATTACTTTGGGTTATGCCCTATCTTCACATAATTTATTTGTTGGTGTATTTAGTTATGCTTTGCTTTGAAGTGAAGCACTTTGATTGGGTTGCTTTCAACTGAAGCATTGGGATGTGATGTGATGTGATACAAGTTTCAGTACATGAAGT]


>consensus_6250#2 GCGGCGGCGGCGGCGATTCCGGCGAGCCCCTCTCCTCCCGCCTCCGGCCAGTACGCTCCC ACCGCGGCGGCCACGGGGAACGGCACGAGCTCCCGCGGCAGGGCGATGGCCGCCGCCCGC TTCGCCGGTGTCCCTCGCCGCGCGGCGCAGTCGTCGTCGTCGTCGTCCCAGGCGCCCCTC GACGAGCCGCCTCCGCCGGCGCTGACGCCCGAGCAGGTCGGTCTATGCAGGGAGGCGCTC GAGTACTTCGAGGGGATGTGTGGCCGGCCGGAAGCCATGTCCGACGAGTTCAGGAGACTC CAGGTATGTATGTACTGTGTTCGTCCGATTTCCTCGTCGTCGTGATGTGAATGTTTGATT GATAATGTGTTGCTGTTTCCTCCCTAGTTTGGCTAACTACTAGATTGTTCAGGCTAATTC CGTAATTGAATACCTGTTTTAGCGATCCTATATTTTCTGTTTGCATCTTACAATGCAATT TGGTCTGCTTGTTCATAGGTTCTGTATCCCCTTTTGTGTTATGTATGTTAAGTGAGTATA ATTTTGCATGTAGGTTTGAAAATTACTGATCATTATTACTGACACACACAGGCTGTGACA GACTAGCATTAAGTGGCTTTTCTGAGTGAAATGAAGAATTGTAATCAAAGTGACAGATGT GCAGTCCAAATTACTTTGGGTTATGCCCTATCTTCACATAATTTATTTGTTGGTGTATTT AGTTATGCTTTGCTTTGAAGTGAAGCACTTTGATTGGGTTGCTTTCAACTGAAGCATTGG GATGTGATGTGATGTGATACAAGTTTCAGTACATGAAGT



consensusID : consensus_6250#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence
                              [GTGATGAATATCTTCCATTACGCAAGCAACGTGAAGCGTATGGAAAGTACAATGTTAAGATTACAAATGCCAAAAGAGATAGCCATCAGTTATGGTTGCGTGATGTGATGGTGCAATGCAACGAGTCAAGCAGGGTTCATTCTGTACGCCATATAGAATATCCTGATTGGCCTGATCATGGAGTTCCAACTAATACTGATGCTGTAAGACAAATTCGAAAATGGTTACAAAATACTCCGATGGAGCATCCTATAGTTGTCCACTGCAGTGCGGGCATTGGAAGAACCGGTGCTTACATAACTATCCATAGTACAATTGAGAGACTTCTCCTTGGTGATAAAAGCTCATATCATCTTGATGAAACTGTCAAAACTTTGAGAACCCAACGAGTTGGAATGGTCCAAACTGAGAAACAATACATGTTCTGCTATCGTGCAATTGCTGATGAGCTGAAAGATCTTTTGGAGTCTAACCGCTGAGGTATCCCTAAGGCAGGAATTATGGACATGTCTGTTTATCTCACCCTTAAATTCCTATAATCTGAATGAATGCCTGATTGGAGCCCCCCATTTCTGCAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA754916             [GTGATGAATATCTTCCATTACGCAAGCAACGTGAAGCGTATGGAAAGTACAATGTTAAGATTACAAATGCCAAAAGAGATAGCCATCAGTTATGGTTGCGTGATGTGATGGTGCAATGCAACGAGTCAAGCAGGGTTCATTCTGTACGCCATATAGAATATCCTGATTGGCCTGATCATGGAGTTCCAACTAATACTGATGCTGTAAGACAAATTCGAAAATGGTTACAAAATACTCCGATGGAGCATCCTATAGTTGTCCACTGCAGTGCGGGCATTGGAAGAACCGGTGCTTACATAACTATCCATAGTACAATTGAGAGACTTCTCCTTGGTGATAAAAGCTCATATCATCTTGATGAAACTGTCAAAACTTTGAGAACCCAACGAGTTGGAATGGTCCAAACTGAGAAACAATACATGTTCTGCTATCGTGCAATTGCTGATGAGCTGAAAGATCTTTTGGAGTCTAACCGCTGAGGTATCCCTAAGGCAGGAATTATGGACATGTCTGTTTATCTCACCCTTAAATTCCTATAATCTGAATGAATGCCTGATTGGAGCCCCCCATTTCTGCAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_6250#3 GTGATGAATATCTTCCATTACGCAAGCAACGTGAAGCGTATGGAAAGTACAATGTTAAGA TTACAAATGCCAAAAGAGATAGCCATCAGTTATGGTTGCGTGATGTGATGGTGCAATGCA ACGAGTCAAGCAGGGTTCATTCTGTACGCCATATAGAATATCCTGATTGGCCTGATCATG GAGTTCCAACTAATACTGATGCTGTAAGACAAATTCGAAAATGGTTACAAAATACTCCGA TGGAGCATCCTATAGTTGTCCACTGCAGTGCGGGCATTGGAAGAACCGGTGCTTACATAA CTATCCATAGTACAATTGAGAGACTTCTCCTTGGTGATAAAAGCTCATATCATCTTGATG AAACTGTCAAAACTTTGAGAACCCAACGAGTTGGAATGGTCCAAACTGAGAAACAATACA TGTTCTGCTATCGTGCAATTGCTGATGAGCTGAAAGATCTTTTGGAGTCTAACCGCTGAG GTATCCCTAAGGCAGGAATTATGGACATGTCTGTTTATCTCACCCTTAAATTCCTATAAT CTGAATGAATGCCTGATTGGAGCCCCCCATTTCTGCAAAAAAAAAAAAAAAAAAAAAAAA A



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6250#0      --------------CCGCCACCACCGCAGCGGCGGCGGCGGCGATTCCGGCGAGCCCCTC 46
consensus_6250#3      ------------------------------------------------------------
consensus_6250#1      CGTCTCCATCGCTTCCGCCACCACCGCAGCGGCGGCGGCGGCGATTCCGGCGAGCCCCTC 60
consensus_6250#2      ------------------------------------------------------------
                                                                                  

consensus_6250#0      TCCTCCCGCCTCCGGCCAGTACGCTCCCACCGCGGCGGCCACGGGGAACGGCACGAGCTC 106
consensus_6250#3      ------------------------------------------------------------
consensus_6250#1      TCCTCCCGCCTCCGGCCAGTACGCTCCCACCGCGGCGGCCACGGGGAACGGCACGAGCTC 120
consensus_6250#2      ------------------------------------------------------------
                                                                                  

consensus_6250#0      CCGCGGCAGGGCGATGGCTGCCGCCCGCTTCGCCGGTGTCCCTCGCCGCGCGGCGCAGTC 166
consensus_6250#3      ------------------------------------------------------------
consensus_6250#1      CCGCGGCAGGGCGATGGCCGCCGCCCGCTTCGCCGGTGTCCCTCGCCGCGCGGCGCAGTC 180
consensus_6250#2      ------------------------------------------------------------
                                                                                  

consensus_6250#0      GTCGTCGTCGTCGTCCCAGGCGCCCCTCGACGAGCCGCCTCCGCCGGCGCTGACGCCCGA 226
consensus_6250#3      ------------------------------------------------------------
consensus_6250#1      GTCGTCGTCGTCGTCCCAGGCGCCCCTCGACGAGCCGCCTCCGCCGGCGCTGACGCCCGA 240
consensus_6250#2      ------------------------------------------------------------
                                                                                  

consensus_6250#0      GCAGGTCGGTCTATGCAGGGAGGCGCTCGAGTACTTCGAGGGGATGTGTGGCCGGCCGGA 286
consensus_6250#3      ------------------------------------------------------------
consensus_6250#1      GCAGGTCGGTCTATGCAGGGAGGCGCTCGAGTACTTCGAGGGGATGTGTGGCCGGCCGGA 300
consensus_6250#2      ------------------------------------------------------------
                                                                                  

consensus_6250#0      AGCCATGTCCGACGAGTTCAGGAGACTCCAGGACACGAGACACGAGCTGATGAGAAGTTC 346
consensus_6250#3      ------------------------------------------------------------
consensus_6250#1      AGCCATGTCCGACGAGTTCAGGAGACTCCAGGACACGAGACACGAGCTGATGAGAAGTTC 360
consensus_6250#2      ------------------------------------------------------------
                                                                                  

consensus_6250#0      TAATGAAGCTCGTAATGCTGCAAATAGGGAGAAAAACCGCTATATTGATGTCGTACCATT 406
consensus_6250#3      ------------------------------------------------------------
consensus_6250#1      TAATGAAGCTCGTAATGCTGCAAATAGGGAGAAAAACCGCTATATTGATGTCGTACCATT 420
consensus_6250#2      ----------------------------------------------------GCGGCGGC 8
                                                                                  

consensus_6250#0      TGATACTACCAGGGTAAGGCTAAAACGATCAACCACCAGTCAGACTTCAAGCAATGATTA 466
consensus_6250#3      ------------------------------------------------------------
consensus_6250#1      TGATACTACCAGGGTAAGGCTAAAACGATCAACCACCAGTCAGACTTCAAGCAATGATTA 480
consensus_6250#2      GGCGGCGATTCCGGCGAGCCCCTCTCCTCCCGCCTCCGGCCAGTACGCTCCCACCGCGGC 68
                                                                                  

consensus_6250#0      TATCAATGCAAGCTTTATAAAGGTCACTGAGGACAACAGAGTTGCAAAATTTATTTCCAC 526
consensus_6250#3      ------------------------------------------------------------
consensus_6250#1      TATCAATGCAAGCTTTATAAAGGTCACTGAGGACAACAGAGTTGCAAAATTTATTTCCAC 540
consensus_6250#2      GGCCACGGGGAACGGCACGAGCTCCCGCGGCAGGGCGATGGCCGCCGCCCGCTTCGCCGG 128
                                                                                  

consensus_6250#0      TCAAGGTCCACTAGCCAAGACATTTGATGATTTCTGGGAAATGGTCTATGAATATCAATG 586
consensus_6250#3      ------------------------------------------------------------
consensus_6250#1      TCAAGGTCCACTAGCCAAGACATTTGATGATTTCTGGGAAATGGTCTATGAATATCAATG 600
consensus_6250#2      T-GTCCCTCGCCGCGCGGCGCAGTCGTCGTCGTCGTCGTCCCAGGCGCCCCTCGACGAGC 187
                                                                                  

consensus_6250#0      TCCTGTTATTGTTATGCTCACACAATTCGACAGTCTTAAGTGTGATGAATATCTTCCATT 646
consensus_6250#3      -----------------------------------------GTGATGAATATCTTCCATT 19
consensus_6250#1      TCCTGTTATTGTTATGCTCACACAATTCGACAGTCTTAAGTGTGATGAATATCTTCCATT 660
consensus_6250#2      CGCCTCCGCCGGCGCTGACGCCCGAGCAGGTCGGTCTATGCAGGGAGGCGCTCGAGTACT 247
                                                                 *  *    **    * *

consensus_6250#0      ACGCAAGCAACGTGAAGCGTATGGAAAGTACAATGTTAAGATTACAAATGCCAAAAGAGA 706
consensus_6250#3      ACGCAAGCAACGTGAAGCGTATGGAAAGTACAATGTTAAGATTACAAATGCCAAAAGAGA 79
consensus_6250#1      ACGCAAGCAACGTGAAGCGTATGGAAAGTACAATGTTAAGATTACAAATGCCAAAAGAGA 720
consensus_6250#2      TCG-AGGGGATGTGTGGCCGGCCGGAAGCCATGTCCGACGAGTTCAGGAGACTCCAGGTA 306
                       ** * *  * ***  **     * ***     *   * ** * **   * *   **  *

consensus_6250#0      TAGCCATCAGTTATGGTTGCGTGATGTGATGGTGCAATGCAACGAGTCAAGCAGGGTTCA 766
consensus_6250#3      TAGCCATCAGTTATGGTTGCGTGATGTGATGGTGCAATGCAACGAGTCAAGCAGGGTTCA 139
consensus_6250#1      TAGCCATCAGTTATGGTTGCGTGATGTGATGGTGCAATGCAACGAGTCAAGCAGGGTTCA 780
consensus_6250#2      TG--TATGTACTGTGTTCGTCCGATTTCCTCGT-CGTCGTGATGTGA-ATGTTTGATTGA 362
                      *    **    * ** * *   *** *  * ** *   *  * * *  * *   * ** *

consensus_6250#0      TTCTGTAC-GCCATATAGAATATCCTGATTGGCCTGATCATGGAGTTCCAACTAATACTG 825
consensus_6250#3      TTCTGTAC-GCCATATAGAATATCCTGATTGGCCTGATCATGGAGTTCCAACTAATACTG 198
consensus_6250#1      TTCTGTAC-GCCATATAGAATATCCTGATTGGCCTGATCATGGAGTTCCAACTAATACTG 839
consensus_6250#2      TAATGTGTTGCTGTTTC---CTCCCTAGTTTGGCTAACTACTAGATT---GTTCAGGCTA 416
                      *  ***   **  * *       ***  ** * ** *  *     **     * *  ** 

consensus_6250#0      ATGCTGTAAGACAAATTCGAAAATGGTTACAAAATACTCCGATGGAGCATCCTATAGTTG 885
consensus_6250#3      ATGCTGTAAGACAAATTCGAAAATGGTTACAAAATACTCCGATGGAGCATCCTATAGTTG 258
consensus_6250#1      ATGCTGTAAGACAAATTCGAAAATGGTTACAAAATACTCCGATGGAGCATCCTATAGTTG 899
consensus_6250#2      ATTCCGTAATTGAATACCTGTTTTAGCGATCCTATATTTTCTGTTTGCATCTTACAA--- 473
                      ** * ****   **   *     * *  *    *** *        ***** ** *    

consensus_6250#0      TACACTGCAGTGCGGGCATTGGAAGAACCGGTGCTTACATAACTATC-CATAGTACAATT 944
consensus_6250#3      TCCACTGCAGTGCGGGCATTGGAAGAACCGGTGCTTACATAACTATC-CATAGTACAATT 317
consensus_6250#1      TACACTGCAGTGCGGGCATTGGAAGAACCGGTGCTTACATAACTATC-CATAGTACAATT 958
consensus_6250#2      TGCAATTTGGTCTGCTTGTTCATAGGTTCTGTATCCCCTTTTGTGTTATGTATGTTAAGT 533
                      * ** *   **  *    **   **   * **     * *   * *    **    ** *

consensus_6250#0      GAG-AGACTTCTCCTTGGTGAT---AAAAGCTCATATCATCTTGATGAAACTGTCAAAAC 1000
consensus_6250#3      GAG-AGACTTCTCCTTGGTGAT---AAAAGCTCATATCATCTTGATGAAACTGTCAAAAC 373
consensus_6250#1      GAG-AGACTTCTCCTTGGTGAT---AAAAGCTCATATCATCTTGATGAAACTGTCAAAAC 1014
consensus_6250#2      GAGTATAATTTTGCATGTAGGTTTGAAAATTACTGATCATTATTACTGACACACACAGGC 593
                      *** * * ** * * **  * *   ****   *  *****  * *   *       *  *

consensus_6250#0      TTTGAGAACCCAACGAGTTGGAATGGTCCAAACTGAGAAACAATACATGTTCTGCTATCG 1060
consensus_6250#3      TTTGAGAACCCAACGAGTTGGAATGGTCCAAACTGAGAAACAATACATGTTCTGCTATCG 433
consensus_6250#1      TTTGAGAACCCAACGAGTTGGAATGGTCCAAACTGAGAAACAATACATGTTCTGCTATCG 1074
consensus_6250#2      TGTGACAGACTAGCA---TTAAGTGGCTTTT-CTGAGTGAAATGAAGAATTGTAAT-CAA 648
                      * *** *  * * *    *  * ***      *****  * *  *    ** *  *    

consensus_6250#0      TGCAATTGCTGATGAGCTGAAAGATCTTTTGGAGTCTAACCGCTGAGGTATCCCTAAGGC 1120
consensus_6250#3      TGCAATTGCTGATGAGCTGAAAGATCTTTTGGAGTCTAACCGCTGAGGTATCCCTAAGGC 493
consensus_6250#1      TGCAATTGCTGATGAGCTGAAAGATCTTTTGGAGTCTAACCGCTGAGGTATCCCTAAGGC 1134
consensus_6250#2      AGTGACAGATGTGCAGTCCAAAT-TACTTTGGGTTATGCCC-------TATCTTCACATA 700
                       *  *  * **   **   ***  *  *****  * *  **       ****   *    

consensus_6250#0      AGGAATTATGGAC-ATGTCTG----------TTTATCTCACCCTTAAATTCCTATAATCT 1169
consensus_6250#3      AGGAATTATGGAC-ATGTCTG----------TTTATCTCACCCTTAAATTCCTATAATCT 542
consensus_6250#1      AGGTAGGTTGCATGATGTGAGACAAAGGGAGTATATAACATCACTGCACAAACATATATG 1194
consensus_6250#2      ATTTATTTGTTGGTGTATTTA---------GTTATGCTTTGCTTTGAAGTGAAGCACTTT 751
                      *   *          * *             *         *  *  *       *    

consensus_6250#0      GGATGAAT-GCCT--GATTGGAGCACAC----CATTTCTGCATTGACTGAACCGTTTGAA 1222
consensus_6250#3      GAATGAAT-GCCT--GATTGGAGCCCCC----CATTTCTGCAAAAAAAAAAAAAAAAAAA 595
consensus_6250#1      GCCTTATG-GCTA--AACTATAATTCTCATAGTCTTACTTTATAATTTTACCTTGTAGGA 1251
consensus_6250#2      GATTGGGTTGCTTTCAACTGAAGCATTGGGATGTGATGTGATGTGATACAAGTTTCAGTA 811
                      *  *     **     * *  *                *          *         *

consensus_6250#0      GCTTAGCACTTTTATTTTGGGTGCACGATTACTTCTGAATAGATTTGACTGCATCAGTAC 1282
consensus_6250#3      AAAAAA------------------------------------------------------ 601
consensus_6250#1      ATTATGGACATGTCTGTTTATCTCACCCTTAAATTCCTATAATCTGAATGAATGCC---- 1307
consensus_6250#2      CATGAAGT---------------------------------------------------- 819
                                                                                  

consensus_6250#0      CGCCATGTCACTTTCATTTCATTACCTCTAAATTGTTGTTATTGCTGCTCTCACGGAATT 1342
consensus_6250#3      ------------------------------------------------------------
consensus_6250#1      ------------------------------------------------------------
consensus_6250#2      ------------------------------------------------------------
                                                                                  

consensus_6250#0      AAAGAGAGTTAGTAGGTTTAGAACTATTGGTGGCATTGTGCCTGTACTTATTGTGCAGCG 1402
consensus_6250#3      ------------------------------------------------------------
consensus_6250#1      ------------------------------------------------------------
consensus_6250#2      ------------------------------------------------------------
                                                                                  

consensus_6250#0      AAGAATGGTTCATTGCTTGGATTTTAACGGAA 1434
consensus_6250#3      --------------------------------
consensus_6250#1      --------------------------------
consensus_6250#2      --------------------------------
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)