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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1599 fasta sequence
[ATAATGATGACGGGAAAACAGCCACAGTTGTTGGAAAAGTTGCAATCACAAAAAATCCGTGTCTCCATCCTGGTGATATCCGAGTACTTGAAGCCATCTATGACCCTGATTTGGTGGGCATGGTTGATTGTCTTGTCTTCCCTCAAAGAGGAGAAAGGCCTCATCCAAACGAATGCTCGGGGGGAGATTTGGACGGCGACCTCTATTTTATTACTTGGGATGACAAACTTATTCCAGAGAAAGTTGATACACCTATGGACTACACAGCAACAAGGCCGCGCATAATGGATCATGTTGTTACACTCGAGGAAATTCAGAAGCACTTTGTTGATTACATGATAAATGACTCGC-TTGGTGCCATCTCAACTGCCCACTTGATTCACGCGGACCGTTCGCCACTGAAAGCTCGGAGTCCCGAGTGCCTCCAGCTGGCAACTCTGCATTCCATGGCAGTTGACTTCGCCAAGACGGGAGCTCCAGCTGAAATGCCGCGAACATTGAGGCCGAGGGAGTACCCCGACTTCATGGAACGGTGGGAGAAGCCGATGTACATCTCCAATGGTGTTCTTGGCAAGCTCTACCGATCAGCGATGGGTCACATGGAGAAATCAGGAGATTCAGGAGCTCTCTCATCATCCTCAGCACAACCAAGCCCCACATACGATCCTGACCTCGAGGTCCCTGGCTCTGACGGATTCCTGCAAGCTGCAGAGGAGTACTACGAGCTGTACGAGGAGAAACTGACCACGCTGATGAACTACTACCGTGCGGAGCTCGAGGACGAGATCCTGACGGGCAACATCCGGAACAAGATGCTGTACCTGAAGAGGGACAACAAGAGGTACTTCGAGATGAAGGACCGGATCGTCGTCGCCGTCGACGCCCTGCACAGGGAGGCGAGGGGCTGGCTGCTGAGCTCCAGGAAGGAAGAGGACGCGTCGCGGATGGCGTCGGCGTGGTACCGCGTGACGTACCACCCAGACCGCCGCCGCGGGAAGCGGTTCTGGAGCTTCCCGTGGATCGCCTGCGACAACCTGCTGGCGATCAAGGCGTCGAGCCAGCTCAGGCGGCGGCGGCAGAAGGACGATGACTCCACCGCGGTGGTGCAGATGGACTGCAGCGCCTGATGTGGCAGAGGATTCTCTGACTTTGAGTGACTGACATGTGGGCCTGCTGGATAAGGGATCCATGGGTCAGTGACAAGTTAGAGGGAAATAAATTAGAGGTTCTCTGACGCGCCGTCCTAAGTGAACTTTCAACTGCACAGTTCATTGCTGTGCGCCTGTGCCTGTACGCTGTACAAATCTGGTTCGACTAATCTTAGCTGAGCTGAACAGCAGAGCTCCGGCTCGCAACTTGGAAGAGGAAAGAGTTTGATGATGAACACCTACGTAGAGTAAAAGTTCCTCTTCCTAATAAAAGAGTCTTAGTGCTGATCTACCGGTAAGGTGGAGGCTTCCATTTCTTGTTTTCTGCGAAGGAAAGAAACTTAGGGTGTGTTTAGTTCACACAAAAATTGAAAGTTTAATTGAAAATGAACGATGTAACGAAAAAGTTGGAAGTTCATGTGTGTAGGAAAGTTTTAATGTGATGAAAAGG]
[+] EMBL AK064379 [ATAATGATGACGGGAAAACAGCCACAGTTGTTGGAAAAGTTGCAATCACAAAAAATCCGTGTCTCCATCCTGGTGATATCCGAGTACTTGAAGCCATCTATGACCCTGATTTGGTGGGCATGGTTGATTGTCTTGTCTTCCCTCAAAGAGGAGAAAGGCCTCATCCAAACGAATGCTCGGGGGGAGATTTGGACGGCGACCTCTATTTTATTACTTGGGATGACAAACTTATTCCAGAGAAAGTTGATACACCTATGGACTACACAGCAACAAGGCCGCGCATAATGGATCATGTTGTTACACTCGAGGAAATTCAGAAGCACTTTGTTGATTACATGATAAATGACTCGC TTGGTGCCATCTCAACTGCCCACTTGATTCACGCGGACCGTTCGCCACTGAAAGCTCGGAGTCCCGAGTGCCTCCAGCTGGCAACTCTGCATTCCATGGCAGTTGACTTCGCCAAGACGGGAGCTCCAGCTGAAATGCCGCGAACATTGAGGCCGAGGGAGTACCCCGACTTCATGGAACGGTGGGAGAAGCCGATGTACATCTCCAATGGTGTTCTTGGCAAGCTCTACCGATCAGCGATGGGTCACATGGAGAAATCAGGAGATTCAGGAGCTCTCTCATCATCCTCAGCACAACCAAGCCCCACATACGATCCTGACCTCGAGGTCCCTGGCTCTGACGGATTCCTGCAAGCTGCAGAGGAGTACTACGAGCTGTACGAGGAGAAACTGACCACGCTGATGAACTACTACCGTGCGGAGCTCGAGGACGAGATCCTGACGGGCAACATCCGGAACAAGATGCTGTACCTGAAGAGGGACAACAAGAGGTACTTCGAGATGAAGGACCGGATCGTCGTCGCCGTCGACGCCCTGCACAGGGAGGCGAGGGGCTGGCTGCTGAGCTCCAGGAAGGAAGAGGACGCGTCGCGGATGGCGTCGGCGTGGTACCGCGTGACGTACCACCCAGACCGCCGCCGCGGGAAGCGGTTCTGGAGCTTCCCGTGGATCGCCTGCGACAACCTGCTGGCGATCAAGGCGTCGAGCCAGCTCAGGCGGCGGCGGCAGAAGGACGATGACTCCACCGCGGTGGTGCAGATGGACTGCAGCGCCTGATGTGGCAGAGGATTCTCTGACTTTGAGTGACTGACATGTGGGCCTGCTGGATAAGGGATCCATGGGTCAGTGACAAGTTAGAGGGAAATAAATTAGAGGTTCTCTGACGCGCCGTCCTAAGTGAACTTTCAACTGCACAGTTCATTGCTGTGCGCCTGTGCCTGTACGCTGTACAAATCTGGTTCGACTAATCTTAGCTGAGCTGAACAGCAGAGCTCCGGCTCGCAACTTGGAAGAGGAAAGAGTTTGATGATGAACACCTACGTAGAGTAAAAGTTCCTCTTCCTAATAAAAGAGTCTTAGTGCTGATCTACCGGTAAGGTGGAGGCTTCCATTTCTTGTTTTCTGCGAAGGAAAGAAACTTAGGGTGTGTTTAGTTCACACAAAAATTGAAAGTTTAATTGAAAATGAACGATGTAACGAAAAAGTTGGAAGTTCATGTGTGTAGGAAAGTTTTAATGTGATGAAAAGG]
[+] EMBL CF323080 [ GGATCATGTTGTTACACTCGAGGAAATTCACAAGCACTTTGTTGATTACATGATAAATGACTCGCATTGGTGCCATCTCAACTGCCCACTTGATTCACGCGGACCGTTCGCCACTGAAAGCTCGGAGTCCCGAGTGCCTCCAGCTGGCAACTCTGCATTCCATGGCAGGTGACTTCGCCAAGACAGGAGCTCCATCTGAAATGCCGCGAACATTGAGGCCGACGGAGTACCCCCACTTCATGGAACGGTGGGAGAAGCC ]
[+] EMBL CF324556 [ TCATGTTGTTACACTCGAGGAAATTCAGAAGCACTTTGTTGATTACATGATAAATGACTCGC TTGGTGCCATCTCAACTGCCCACTTGATTCACGCGGACCGTTCGCCACTGAAAGCTCGGAGTCCCGAGTGCCTCCAGCTGGCAACTCTGCATTCCATGGCAGTTGACTTCGCCAAGACGGGAGCTCCAGCTGAAATGCCGCGAACATTGAGGCCGAGGGAGTACCCCGACTTCATGGAACGGTGGGAGAAGCCGATGTACATCTCCAATGGTGTTCTTGGCAAGCTCTACCGATCAGCGATGGGTCACATGGAGAAATCAGGAGATTCAGGAGCTCTCTCATCATCCTCAGCACAACCAAGCCCCACATACGATCCTGACCTCGAGGTCCCTGGCTCTGACGAATTCCTGCAAGCTGCAGAGGAGTACTACGAGCTGTACGAGGAGAAACTGACCACGCTGATGAACTACTACCGTGCGGAGCTCGAGGACGAGATCCTGACGGGCAACATCCGGAACAAGATG ]
consensusID : consensus_6259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence
[AGGGACGAGACAAGGGGGGAGATTTGGACGGCGACCTCTATTTTATTACTTGGGATGACAAACTTATTCCAGAGAAAGTTGATACACCTATGGACTACACAGCAACAAGGCCGCGCATAATGGATCATGTTGTTACACTCGAGGTAATGCCTGACTAATTGTTCCTTTTCCCCTTTTTGCTAGGCTGTTGTTTCTCATTTACTGAAGGATTTCTTTTTGTTCTTTACTAATTCAATCTTGATAGTTGCAAAATGTCACCAATTATGGACTGTAGCATTATAGTCATATATATGGGCCTGAGGCACCTTTTAAAAATGTATGCTTGCGGTTAAGGGCATGAATAAATGCATTAGGACAATATGTGCATATGTTCCATGAAACATGTGATGCTAATAAGGTTATGCAAACCAGAAAGTACAAGCTTGGAGTGAGTTTCTAACTCAACTAGTCAACTCACTCAGGATGGTTTAACAATTAACAGAAAAACTGGTGGTCATTGATCTAAAAGTAATATATCTACGTGAACACCAATCATTGAAAAGTTTTGAATAATTTCAAACAAGTATGCACTGACCATACACATTTAACAATAGTATTTAGAAATTTTGAGAGCTTTATTCAGAAAAGAAAACAGCATCCCCAAAAAAAAAA]
[-] EMBL CA762311 [AGGGACGAGACAAGGGGGGAGATTTGGACGGCGACCTCTATTTTATTACTTGGGATGACAAACTTATTCCAGAGAAAGTTGATACACCTATGGACTACACAGCAACAAGGCCGCGCATAATGGATCATGTTGTTACACTCGAGGTAATGCCTGACTAATTGTTCCTTTTCCCCTTTTTGCTAGGCTGTTGTTTCTCATTTACTGAAGGATTTCTTTTTGTTCTTTACTAATTCAATCTTGATAGTTGCAAAATGTCACCAATTATGGACTGTAGCATTATAGTCATATATATGGGCCTGAGGCACCTTTTAAAAATGTATGCTTGCGGTTAAGGGCATGAATAAATGCATTAGGACAATATGTGCATATGTTCCATGAAACATGTGATGCTAATAAGGTTATGCAAACCAGAAAGTACAAGCTTGGAGTGAGTTTCTAACTCAACTAGTCAACTCACTCAGGATGGTTTAACAATTAACAGAAAAACTGGTGGTCATTGATCTAAAAGTAATATATCTACGTGAACACCAATCATTGAAAAGTTTTGAATAATTTCAAACAAGTATGCACTGACCATACACATTTAACAATAGTATTTAGAAATTTTGAGAGCTTTATTCAGAAAAGAAAACAGCATCCCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6259#0 ATAATGATGACGGGAAAACAGCCACAGTTGTTGGAAAAGTTGCAATCACAAAAAATCCGT 60
consensus_6259#1 ------------------------------------------------------------
consensus_6259#0 GTCTCCATCCTGGTGATATCCGAGTACTTGAAGCCATCTATGACCCTGATTTGGTGGGCA 120
consensus_6259#1 ------------------------------------------------------------
consensus_6259#0 TGGTTGATTGTCTTGTCTTCCCTCAAAGAGGAGAAAGGCCTCATCCAAACGAATGCTCGG 180
consensus_6259#1 --------------------------------------------AGGGACGAG-ACAAGG 15
**** * **
consensus_6259#0 GGGGAGATTTGGACGGCGACCTCTATTTTATTACTTGGGATGACAAACTTATTCCAGAGA 240
consensus_6259#1 GGGGAGATTTGGACGGCGACCTCTATTTTATTACTTGGGATGACAAACTTATTCCAGAGA 75
************************************************************
consensus_6259#0 AAGTTGATACACCTATGGACTACACAGCAACAAGGCCGCGCATAATGGATCATGTTGTTA 300
consensus_6259#1 AAGTTGATACACCTATGGACTACACAGCAACAAGGCCGCGCATAATGGATCATGTTGTTA 135
************************************************************
consensus_6259#0 CACTCGAGGAAATTCAGAAGCACTTTGTTGATTACATGATAAATGACTCGCTTGGTGCCA 360
consensus_6259#1 CACTCGAGGTAATGCCTGACTAATTGTTCCTTTTCCCCTT--TTTGCTAGGCTGTTGTT- 192
********* *** * * * ** * ** * * * ** * ** **
consensus_6259#0 TCTCAACTGCCCACTTGATTCACGCGGACCGTTCGCCACTGAAAGCTCGGAGTCCCGAG- 419
consensus_6259#1 TCTCATTTACTGAAGGATTTCTTTTTGTTCTTTACTAATTCAATCTTGATAGTTGCAAAA 252
***** * * * *** * * ** * * ** * *** * *
consensus_6259#0 TGCCTCCAGCTGGCAACTCTGCATTCCATGGCAGTTGACTTCGCCAAGACGGGAGCTCCA 479
consensus_6259#1 TGTCACCAATTATGGACT----GTAGCATTATAGTC-ATATATATGGGCCTGAGGCACCT 307
** * *** * *** * *** *** * * * * * ** **
consensus_6259#0 GCTGAAATGCCGCGAACATTGAGGCCGAGGGAGTACCCCGACTTCATGGAACGGTGGGAG 539
consensus_6259#1 TTTAAAAATGTATGC---TTGCGGTTAAGGGCATGAATAAATGCATTAGGACAATATGTG 364
* *** * *** ** **** * * * * ** * * *
consensus_6259#0 AAGCCGATGTACATCTCCAATGGTGTTCTTGGCAAGCTCTACCGATCAGCGATGGGTCAC 599
consensus_6259#1 CATATGTTCCATGAAACATGTGATGCTAATA--AGGTTATGCAAACCAGAAAGTACAAGC 422
* * * * * ** ** * * * * * * * * *** * *
consensus_6259#0 ATGGAGAAATCAGGAGATTCAGGAGCTCTCTCATCATCCTCAGCACAACCAAGCCCCACA 659
consensus_6259#1 TTGGAGTGAGTTTCTAACTCAA----CTAGTCAACTCACTCAGGATGGTTTAACAATTAA 478
***** * * *** *** * ***** * * * *
consensus_6259#0 TACGATCCTGACCTCGAGGTCCCTGGCTCTGACGGATTCCTGCAAGCTGCAGAGGAGTAC 719
consensus_6259#1 CAGAA----AAACTGGTGGTCATTGATCTAAAAGTAATATATCTACGTGAACACCAATCA 534
* * * ** * **** ** * * * * * * ** * * * *
consensus_6259#0 TACGAGCTGTACGAGGAGAAACTGACCACGCTG-ATGAACTACTACCGTGCGGAGCTCGA 778
consensus_6259#1 TTGAAAAGTTTTGAATAATTTCAAACAAGTATGCACTGACCATACACATTTAACAATAGT 594
* * * ** * * ** * ** * ** * * * * *
consensus_6259#0 GGACGAGATCCTGACGGGCAACATCCGGAACAAGATGCTGTACCTGAAGAGGGACAACAA 838
consensus_6259#1 ATTTAGAAATTTTGAGAGCTTTATTCAGAAAAGAAAACAGCATCCCCAAAAAAAAAA--- 651
* * * ** ** * *** * * * * * * * * * **
consensus_6259#0 GAGGTACTTCGAGATGAAGGACCGGATCGTCGTCGCCGTCGACGCCCTGCACAGGGAGGC 898
consensus_6259#1 ------------------------------------------------------------
consensus_6259#0 GAGGGGCTGGCTGCTGAGCTCCAGGAAGGAAGAGGACGCGTCGCGGATGGCGTCGGCGTG 958
consensus_6259#1 ------------------------------------------------------------
consensus_6259#0 GTACCGCGTGACGTACCACCCAGACCGCCGCCGCGGGAAGCGGTTCTGGAGCTTCCCGTG 1018
consensus_6259#1 ------------------------------------------------------------
consensus_6259#0 GATCGCCTGCGACAACCTGCTGGCGATCAAGGCGTCGAGCCAGCTCAGGCGGCGGCGGCA 1078
consensus_6259#1 ------------------------------------------------------------
consensus_6259#0 GAAGGACGATGACTCCACCGCGGTGGTGCAGATGGACTGCAGCGCCTGATGTGGCAGAGG 1138
consensus_6259#1 ------------------------------------------------------------
consensus_6259#0 ATTCTCTGACTTTGAGTGACTGACATGTGGGCCTGCTGGATAAGGGATCCATGGGTCAGT 1198
consensus_6259#1 ------------------------------------------------------------
consensus_6259#0 GACAAGTTAGAGGGAAATAAATTAGAGGTTCTCTGACGCGCCGTCCTAAGTGAACTTTCA 1258
consensus_6259#1 ------------------------------------------------------------
consensus_6259#0 ACTGCACAGTTCATTGCTGTGCGCCTGTGCCTGTACGCTGTACAAATCTGGTTCGACTAA 1318
consensus_6259#1 ------------------------------------------------------------
consensus_6259#0 TCTTAGCTGAGCTGAACAGCAGAGCTCCGGCTCGCAACTTGGAAGAGGAAAGAGTTTGAT 1378
consensus_6259#1 ------------------------------------------------------------
consensus_6259#0 GATGAACACCTACGTAGAGTAAAAGTTCCTCTTCCTAATAAAAGAGTCTTAGTGCTGATC 1438
consensus_6259#1 ------------------------------------------------------------
consensus_6259#0 TACCGGTAAGGTGGAGGCTTCCATTTCTTGTTTTCTGCGAAGGAAAGAAACTTAGGGTGT 1498
consensus_6259#1 ------------------------------------------------------------
consensus_6259#0 GTTTAGTTCACACAAAAATTGAAAGTTTAATTGAAAATGAACGATGTAACGAAAAAGTTG 1558
consensus_6259#1 ------------------------------------------------------------
consensus_6259#0 GAAGTTCATGTGTGTAGGAAAGTTTTAATGTGATGAAAAGG 1599
consensus_6259#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||