These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 446 fasta sequence [ATCGCCGGCTACTGATCGTTGATACCACATCATATCGTTGATGATGATTTGAGGTGTTCTTGCGTGTAGATAGGTCGATCGGGGGTCATTCTTTGGACCGATCGATATATGGACGTTAATTTGTTCGTCTTTGTGTGTTATTTGTATATAGGAGATGAGATTTACTCCGGTCCAACAAAAAGTAACTCGAGGTACCGATACCTCACGGTACCAAATTGTTTCCGATCGTTGGATCTAGCTGGGTGGGTTGGGCATCGTTAGATCCAACGATCGGAAATGATTTTGTACCGCGAGGTACCGATACCTCGAGATACTTTTTGTTGGACCGAAGAAAAACTCATATAGGAGATGGGTGCTCTTGTTCGTAGTTTGTTTGATTCTGTTATTTTTTTTCTCTTGTAGATATAAAAGAGATTGGGATTTGTTTCAAAAAAAAAAAAAAAAAA] [+] EMBL AU057957 [ATCGCCGGCTACTGATCGTTGATACCACATCATATCGTTGATGATGATTTGAGGTGTTCTTGCGTGTAGATAGGTCGATCGGGGGTCATTCTTTGGACCGATCGATATATGGACGTTAATTTGTTCGTCTTTGTGTGTTATTTGTATATAGGAGATGAGATTTACTCCGGTCCAACAAAAAGTAACTCGAGGTACCGATACCTCACGGTACCAAATTGTTTCCGATCGTTGGATCTAGCTGGGTGGGTTGGGCATCGTTAGATCCAACGATCGGAAATGATTTTGTACCGCGAGGTACCGATACCTCGAGATACTTTTTGTTGGACCGAAGAAAAACTCATATAGGAGATGGGTGCTCTTGTTCGTAGTTTGTTTGATTCTGTTATTTTTTTTCTCTTGTAGATATAAAAGAGATTGGGATTTGTTTCAAAAAAAAAAAAAAAAAA] [+] EMBL AU108277 [ATCGCCGGCTACTGATCGTTGATACCACATCATATCGTTGATGATGATTTGAGGTGTTCTTGCGTGTAGATAGGTCGATCGGGGGTCATTCTTTGGACCGATCGATATATGGACGTTAATTTGTTCGTCTTTGTGTGTTATTTGTATATAGGAGATGAGATTTACTCCGGTCCAACAAAAAGTAACTCGAGGTACCGATACCTCACGGTACCAAATTGTTTCCGATCGTTGGATCTAGCTGGGTGGGTTGGGCATCGTTAGATCCAACGATCGGAAATGATTTTGTACCGCGAGGTACCGATACCTCGAGATACTTTTTGTTGGACCGAAGAAAAACTCATATAGGAGATGGGTGCTCTTGTTCGTAGTTTGTTTGATTCTGTTATTTTTTTTCTCTTGTAGATATAAAAGAGATTGGGATTTGTTTCGCTGAAAAAAAAAA ] [+] EMBL AU082568 [ATCGCCGGCTACTGATCGTTGATACCACATCATATCGTTGATGATGATTTGAGGTGTTCTTGCGTGTAGATAGGTCGATCGGGGGTCATTCTTTGGACCGATCGATATATGGACGTTAATTTGTTCGTCTTTGTGTGTTATTTGTATATAGGAGATGAGATTTACTCCGGTCCAACAAAAAGTAACTCGAGGTACCGATACCTCACGGTACCAAATTGTTTCCGATCGTTGGATCTAGCTGGGTGGGTTNGGCATCGTTAGATCCAACGATCGGAAATGATTTTGTACCGCGA GTACCGATACCTCGAGATACTTTTTGTTGGACCGAAGAAAAACTCATATAGGA ] consensusID : consensus_6263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 158 fasta sequence [CAAGATACTTTTTGTTGGACCGAAGCAAAAACTCATATAGGAGATGGGTGCTCTTGTCCGTAGTTTGTTTGATTCTGTTATTTTTTCCTCTTGTAGATATAAAAGAGATTGGGATTTGTTTCGCTGTGTTCTTGTTTAAAAAAAAAAAAAAAAAAAAA] [-] EMBL BQ529310 [CAAGATACTTTTTGTTGGACCGAAGCAAAAACTCATATAGGAGATGGGTGCTCTTGTCCGTAGTTTGTTTGATTCTGTTATTTTTTCCTCTTGTAGATATAAAAGAGATTGGGATTTGTTTCGCTGTGTTCTTGTTTAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6263#0 ATCGCCGGCTACTGATCGTTGATACCACATCATATCGTTGATGATGATTTGAGGTGTTCT 60 consensus_6263#1 ------------------------------------------------------------ consensus_6263#0 TGCGTGTAGATAGGTCGATCGGGGGTCATTCTTTGGACCGATCGATATATGGACGTTAAT 120 consensus_6263#1 ------------------------------------------------------------ consensus_6263#0 TTGTTCGTCTTTGTGTGTTATTTGTATATAGGAGATGAGATTTACTCCGGTCCAACAAAA 180 consensus_6263#1 ------------------------------------------------------------ consensus_6263#0 AGTAACTCGAGGTACCGATACCTCACGGTACCAAATTGTTTCCGATCGTTGGATCTAGCT 240 consensus_6263#1 ------------------------------------------------------------ consensus_6263#0 GGGTGGGTTGGGCATCGTTAGATCCAACGATCGGAAATGATTTTGTACCGCGAGGTACCG 300 consensus_6263#1 ------------------------------------------------------------ consensus_6263#0 ATACCTCGAGATACTTTTTGTTGGACCGAAG-AAAAACTCATATAGGAGATGGGTGCTCT 359 consensus_6263#1 ------CAAGATACTTTTTGTTGGACCGAAGCAAAAACTCATATAGGAGATGGGTGCTCT 54 * *********************** **************************** consensus_6263#0 TGTTCGTAGTTTGTTTGATTCTGTTATTTTTTTTCTCTTGTAGATATAAAAGAGATTGGG 419 consensus_6263#1 TGTCCGTAGTTTGTTTGATTCTGTTATTTTTTC-CTCTTGTAGATATAAAAGAGATTGGG 113 *** **************************** ************************** consensus_6263#0 ATTTGTTTC---------------AAAAAAAAAAAAAAAAAA--- 446 consensus_6263#1 ATTTGTTTCGCTGTGTTCTTGTTTAAAAAAAAAAAAAAAAAAAAA 158 ********* ****************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||