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Oryza sativa
cluster # 6264 cluster # 6264       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6264#0 length = 1103 sequences # 3  
consensus_6264#1 length = 302 sequences # 1  

consensusID : consensus_6264#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1103
fasta sequence
                              [CCTCTCCGCATCCCACAGCCACAAGCGGCGCCGCACCACTTCGTCCTCAACCAAAACCTCCGCCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGAGGAGTAGGGAGAGTAAGCGGGGAGAGGAAGATGTCGTTCCGTGCGCGGGAGATGTACAAGAAGGTGGTGCGGCGCGTGGGCGGCGAGGGGAAGCTGCCGGCGGAGCTGATGGCGTCGGTGAAGAACTTGCTGCCTGACAGCAAGGTCGTCATGGGGAGGGCCAAGCGCGGCATCTACGCCGGACGCCACATCCAGTTCGGCAACAAGGTCTCCGAGGACGGTGGCAACAAGTCAAGGCGAACATGGAAGCCAAATGTTCAGGAGAAGCGTCTTTTTAGCTATATTCACGACCGGCACATTAGGGTCAAGGTAACCACCCATGCTCTTCGGTGCATTGACAAAGCTGGTGGGATAGACGAATACCTCCTGAAGACACCTTACAACAAAATGGATACTGAGAT-GGGGGTAGC-CTGGAAGGCAAAGATTGAG-AAGATGTATTCACAGCTAGCTCAAATGGAGGTAGGCTTCTTCTCTCCTGAGGAAGAGACTAAGATCGAACAGGGTTTTGAGGAGGCTCGAGCTGCCAAGAGAGAGCACCGCAGGGAAGCAAGAAGAGCTTTGGCTAAGCAGACTCAGCTAGAAGCTGGTAACGCTGGTGGTGAC-AAACAGCTGAAGCTGCTTCTAATGTTGCAGTGAAGTCCTAGCTTGGACCTATCTGCTCGTCATGATTGGTCAAAAGGAGAATCATTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCAGGGATCATATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCAGTGTATGGTAAGCTGGAGTCTAATACTATCAGCATGTGGGTGTTGTAAGCAGTTGCTGAACAAAATCAGTTAGGTGGAAATTTTGTACACTTACTGAATACTCGTGTCAGAGTTCAGATAACTTTCTTGTAGAATTTTGTATCTTCTACTACTGCCCATTCAACTTAAACGTCGAAATAATCTATGCTTGCCAGGATACGTGGTAATGTGCTACGGAGCTATGCC]

[+] EMBL AK070349             [CCTCTCCGCATCCCACAGCCACAAGCGGCGCCGCACCACTTCGTCCTCAACCAAAACCTCCGCCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGAGGAGTAGGGAGAGTAAGCGGGGAGAGGAAGATGTCGTTCCGTGCGCGGGAGATGTACAAGAAGGTGGTGCGGCGCGTGGGCGGCGAGGGGAAGCTGCCGGCGGAGCTGATGGCGTCGGTGAAGAACTTGCTGCCTGACAGCAAGGTCGTCATGGGGAGGGCCAAGCGCGGCATCTACGCCGGACGCCACATCCAGTTCGGCAACAAGGTCTCCGAGGACGGTGGCAACAAGTCAAGGCGAACATGGAAGCCAAATGTTCAGGAGAAGCGTCTTTTTAGCTATATTCACGACCGGCACATTAGGGTCAAGGTAACCACCCATGCTCTTCGGTGCATTGACAAAGCTGGTGGGATAGACGAATACCTCCTGAAGACACCTTACAACAAAATGGATACTGAGAT GGGGGTAGC CTGGAAGGCAAAGATTGAG AAGATGTATTCACAGCTAGCTCAAATGGAGGTAGGCTTCTTCTCTCCTGAGGAAGAGACTAAGATCGAACAGGGTTTTGAGGAGGCTCGAGCTGCCAAGAGAGAGCACCGCAGGGAAGCAAGAAGAGCTTTGGCTAAGCAGACTCAGCTAGAAGCTGGTAACGCTGGTGGTGAC AAACAGCTGAAGCTGCTTCTAATGTTGCAGTGAAGTCCTAGCTTGGACCTATCTGCTCGTCATGATTGGTCAAAAGGAGAATCATTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCAGGGATCATATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCAGTGTATGGTAAGCTGGAGTCTAATACTATCAGCATGTGGGTGTTGTAAGCAGTTGCTGAACAAAATCAGTTAGGTGGAAATTTTGTACACTTACTGAATACTCGTGTCAGAGTTCAGATAACTTTCTTGTAGAATTTTGTATCTTCTACTACTGCCCATTCAACTTAAACGTCGAAATAATCTATGCTTGCCAGGATACGTGGTAATGTGCTACGGAGCTATGCC]
[+] EMBL CF323157             [                                                                                                           ctcgtgccGAGAGGAAGATGTCGTTCCGTGCGCGGGAGATGTACAAGAAGGTGGTGCGGCGCGTGGGCGGCGAGGGGAAGCTGCCGGCGGAGCTGATGGCGTCGGTGAAGAACTTGCTGCCTGACAGCAAGGTCGTCATGGGGAGGGCCAAGCGCGGCATCTACGCCGGACGCCACATCCAGTTCGGCAACAAGGTCTCCGAGGACGGTGGCAACAAGTCAAGGCGAACATGGAAGCCAAATGTTCAGGAGAAGCGTCTTTTTAGCTATATTCACGACCGGCACATTAGGGTCAAGGTAACCACCCATGCTCTTCGGTGCATTGACAAAGCTGGTGGGATAGACGAATACCTCCTGAAGACACCTTACAACAAAATGGATACTGAGATGGGGGGTAGCNTTGGAAGGCAAAGATTGAGAAAGATGTATTCACAGCTAGCTCAAATGGAGGTAGGCTTCTTCTCTCCTGAGGAAGAGACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA999897             [                                                                                                                                                                                                                                                                                                                                                                                                                AAGGTAACCACCCATGCTCTTCGGTGCATTGACAAAGCTGGTGGGATAGACGAATACCTCCTGAAGACACCTTACAACAAAATGGATACTGAGAT GGGGGTAGC CTGGAAGGCAAAGATTGAG AAGATGTATTCACAGCTAGCTCAAATGGAGGTAGGCTTCTTCTCTCCTGAGGAAGAGACTAAGATCGAACAGGGTTTTGAGGAGGCTCGAGCTGCCAAGAGAGAGCACCGCAGGGAAGCAAGAAGAGCTTTGGCTAAGCAGACTCAGCTAGAAGCTGGTAACGCTGGTGGTGACAAAACAGCTGAAGCTGCTTCTAATGTTGCAGTGAAGTCCTAGCTTGGACCTATCTGCTCGTCATGATTGGTCAAAAGGAGAATCATTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCAGGGATCATATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCAGTGTATGGTAAGCTGGAGTCTAATACTATCAGCATGTGGGTGTTGTAAGCAGTTGCTGAA AAAATCAGTTAGGTGGAAATTTTGTACACTTACTGA                                                                                                                                ]


>consensus_6264#0 CCTCTCCGCATCCCACAGCCACAAGCGGCGCCGCACCACTTCGTCCTCAACCAAAACCTC CGCCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGAGGAGTAGGGAGAGTAAGCGGGGAGAG GAAGATGTCGTTCCGTGCGCGGGAGATGTACAAGAAGGTGGTGCGGCGCGTGGGCGGCGA GGGGAAGCTGCCGGCGGAGCTGATGGCGTCGGTGAAGAACTTGCTGCCTGACAGCAAGGT CGTCATGGGGAGGGCCAAGCGCGGCATCTACGCCGGACGCCACATCCAGTTCGGCAACAA GGTCTCCGAGGACGGTGGCAACAAGTCAAGGCGAACATGGAAGCCAAATGTTCAGGAGAA GCGTCTTTTTAGCTATATTCACGACCGGCACATTAGGGTCAAGGTAACCACCCATGCTCT TCGGTGCATTGACAAAGCTGGTGGGATAGACGAATACCTCCTGAAGACACCTTACAACAA AATGGATACTGAGATGGGGGTAGCCTGGAAGGCAAAGATTGAGAAGATGTATTCACAGCT AGCTCAAATGGAGGTAGGCTTCTTCTCTCCTGAGGAAGAGACTAAGATCGAACAGGGTTT TGAGGAGGCTCGAGCTGCCAAGAGAGAGCACCGCAGGGAAGCAAGAAGAGCTTTGGCTAA GCAGACTCAGCTAGAAGCTGGTAACGCTGGTGGTGACAAACAGCTGAAGCTGCTTCTAAT GTTGCAGTGAAGTCCTAGCTTGGACCTATCTGCTCGTCATGATTGGTCAAAAGGAGAATC ATTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCAGGGATCATAT GCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCAGTGTATGGTAAGCTGGAGTCTA ATACTATCAGCATGTGGGTGTTGTAAGCAGTTGCTGAACAAAATCAGTTAGGTGGAAATT TTGTACACTTACTGAATACTCGTGTCAGAGTTCAGATAACTTTCTTGTAGAATTTTGTAT CTTCTACTACTGCCCATTCAACTTAAACGTCGAAATAATCTATGCTTGCCAGGATACGTG GTAATGTGCTACGGAGCTATGCC



consensusID : consensus_6264#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence
                              [TGTACTCCAAATAACTCGACATACTCCTCTTGCAGGTCCAAAGGAGAATCACTTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCCACGGGATCATATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCCAGTGTATGGTAAGCCTGGAGTCTAATACTATCAGCATGTGGGTGTTGTAAGCCAGTTGCTGAACCAAATCAGTTAGGTGGAAATTTTGTACACTTACTGAATACCTCGTGTCAGAGTTCAGATAACTTTCTTGTAGAATTTTGTATCTTCT]

[+] EMBL BI805622             [TGTACTCCAAATAACTCGACATACTCCTCTTGCAGGTCCAAAGGAGAATCACTTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCCACGGGATCATATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCCAGTGTATGGTAAGCCTGGAGTCTAATACTATCAGCATGTGGGTGTTGTAAGCCAGTTGCTGAACCAAATCAGTTAGGTGGAAATTTTGTACACTTACTGAATACCTCGTGTCAGAGTTCAGATAACTTTCTTGTAGAATTTTGTATCTTCT]


>consensus_6264#1 TGTACTCCAAATAACTCGACATACTCCTCTTGCAGGTCCAAAGGAGAATCACTTGAGTGC CACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCCACGGGATCATATGCTGAGT CAGTAACCCCTGTTTACTGGCAGCAGCAGCCAGTGTATGGTAAGCCTGGAGTCTAATACT ATCAGCATGTGGGTGTTGTAAGCCAGTTGCTGAACCAAATCAGTTAGGTGGAAATTTTGT ACACTTACTGAATACCTCGTGTCAGAGTTCAGATAACTTTCTTGTAGAATTTTGTATCTT CT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6264#0      CCTCTCCGCATCCCACAGCCACAAGCGGCGCCGCACCACTTCGTCCTCAACCAAAACCTC 60
consensus_6264#1      ------------------------------------------------------------
                                                                                  

consensus_6264#0      CGCCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGAGGAGTAGGGAGAGTAAGCGGGGAGAG 120
consensus_6264#1      ------------------------------------------------------------
                                                                                  

consensus_6264#0      GAAGATGTCGTTCCGTGCGCGGGAGATGTACAAGAAGGTGGTGCGGCGCGTGGGCGGCGA 180
consensus_6264#1      ------------------------------------------------------------
                                                                                  

consensus_6264#0      GGGGAAGCTGCCGGCGGAGCTGATGGCGTCGGTGAAGAACTTGCTGCCTGACAGCAAGGT 240
consensus_6264#1      ------------------------------------------------------------
                                                                                  

consensus_6264#0      CGTCATGGGGAGGGCCAAGCGCGGCATCTACGCCGGACGCCACATCCAGTTCGGCAACAA 300
consensus_6264#1      ------------------------------------------------------------
                                                                                  

consensus_6264#0      GGTCTCCGAGGACGGTGGCAACAAGTCAAGGCGAACATGGAAGCCAAATGTTCAGGAGAA 360
consensus_6264#1      ------------------------------------------------------------
                                                                                  

consensus_6264#0      GCGTCTTTTTAGCTATATTCACGACCGGCACATTAGGGTCAAGGTAACCACCCATGCTCT 420
consensus_6264#1      ------------------------------------------------------------
                                                                                  

consensus_6264#0      TCGGTGCATTGACAAAGCTGGTGGGATAGACGAATACCTCCTGAAGACACCTTACAACAA 480
consensus_6264#1      ------------------------------------------------------------
                                                                                  

consensus_6264#0      AATGGATACTGAGATGGGGGTAGCCTGGAAGGCAAAGATTGAGAAGATGTATTCACAGCT 540
consensus_6264#1      ------------------------------------------------------------
                                                                                  

consensus_6264#0      AGCTCAAATGGAGGTAGGCTTCTTCTCTCCTGAGGAAGAGACTAAGATCGAACAGGGTTT 600
consensus_6264#1      ------------------------------------------------------------
                                                                                  

consensus_6264#0      TGAGGAGGCTCGAGCTGCCAAGAGAGAGCACCGCAGGGAAGCAAGAAGAGCTTTGGCTAA 660
consensus_6264#1      ------------------------------------------------------------
                                                                                  

consensus_6264#0      GCAGACTCAGCTAGAAGCTGGTAACGCTGGTGGTGACAAACAGCTGAAGCTGCTTCTAAT 720
consensus_6264#1      ------------------------------------------------------------
                                                                                  

consensus_6264#0      GTTGCAGTGAAGTCCTAGCTTGGACCTATCTGCTCGTCATGATTGGTCAAAAGGAGAATC 780
consensus_6264#1      -------TGTACTCCAAA--TAACTCGACATACTCCTCTTG-CAGGTCCAAAGGAGAATC 50
                             ** * *** *   *    * *  * *** ** **   **** ***********

consensus_6264#0      A-TTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCA--GGGATCA 837
consensus_6264#1      ACTTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCCACGGGATCA 110
                      * ************************************************   *******

consensus_6264#0      TATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGC-AGTGTATGGTAAGC-TGGA 895
consensus_6264#1      TATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCCAGTGTATGGTAAGCCTGGA 170
                      **************************************** ************** ****

consensus_6264#0      GTCTAATACTATCAGCATGTGGGTGTTGTAAGC-AGTTGCTGAACAAAATCAGTTAGGTG 954
consensus_6264#1      GTCTAATACTATCAGCATGTGGGTGTTGTAAGCCAGTTGCTGAACCAAATCAGTTAGGTG 230
                      ********************************* *********** **************

consensus_6264#0      GAAATTTTGTACACTTACTGAATAC-TCGTGTCAGAGTTCAGATAACTTTCTTGTAGAAT 1013
consensus_6264#1      GAAATTTTGTACACTTACTGAATACCTCGTGTCAGAGTTCAGATAACTTTCTTGTAGAAT 290
                      ************************* **********************************

consensus_6264#0      TTTGTATCTTCTACTACTGCCCATTCAACTTAAACGTCGAAATAATCTATGCTTGCCAGG 1073
consensus_6264#1      TTTGTATCTTCT------------------------------------------------ 302
                      ************                                                

consensus_6264#0      ATACGTGGTAATGTGCTACGGAGCTATGCC 1103
consensus_6264#1      ------------------------------
                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)