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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6266#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1320 fasta sequence
[ACAAACAGACCGCACAACCCGACGGCGCAGACGCCACGCCGGGGGGCGCCGCCGCCGCCGCCGCCGCCGCCAACGCGACGAACCGCGGGTACAAGAAGGCAGGGAAGCCGAGACGAGGGGCTCCAATGGCGCTCCGCCGCGTGCTCCTCTTCGTCAAGCCCTTCGACGTCTACCCTCCCCGCCCGCTCGCCGCCGCCGCCTCCTCGCCTCCGCCCCCGCCGCCGCCGCTGCGTGTATCCAATCCCAAGGTCTTGAATTATCTGGATGATAGGTGCAGAGTTCACAAGGAAACAATCAATCTCTGCAAAAGCGTACTGCAGCGTAAATCCATTGACTGGATTTCAGTGCAGCGAAATGATATGTCTAATCCAATACATGATGTGGATCTTGTGATTTCTGTTGGTGGTGATGGCACTCTTCTACGGGCTAGCCATTTTTTGAATAGCTCAATTCCCGTTTTAGGTGTTAATTCAGACCCTACTTGTCCTGATGAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGACATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGTAGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCAACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTCTCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGTGGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTCGTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGGGATGCTGACAAGCCACTGCTGCATGGGTTAGTTAAGCAAGGTCAACACATACTTGTCGTTTGGTACAATGAGGAAGGCGCTGTTTATTTTGATGGTTCACATGTAATGCATTCAATTCAGCATGGAGATACACTGGAGATCTCCTCTGATGCTCCAATCTTGAAAGTTATTTTGCCAGAAAATCTGTTAAAGCAGGGATCTTAGTAATGCAATAACATTATCATCGTTATTGTGCTTGTTAATATGGTATGATGTTTGACACTTGAGTTTCTGAGAACTGTCTGATATAGATGCGTATTTATGTAATGACAGAGTTAACTTATGCTATGAAATAAAATAGTGGATGCTAATTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK073719 [ AAACAGACCGCACAACCCGACGGCGCAGACGCCACGCCGGGGGGCGCCGCCGCCGCCGCCGCCGCCGCCAACGCGACGAACCGCGGGTACAAGAAGGCAGGGAAGCCGAGACGAGGGGCTCCAATGGCGCTCCGCCGCGTGCTCCTCTTCGTCAAGCCCTTCGACGTCTACCCTCCCCGCCCGCTCGCCGCCGCCGCCTCCTCGCCTCCGCCCCCGCCGCCGCCGCTGCGTGTATCCAATCCCAAGGTCTTGAATTATCTGGATGATAGGTGCAGAGTTCACAAGGAAACAATCAATCTCTGCAAAAGCGTACTGCAGCGTAAATCCATTGACTGGATTTCAGTGCAGCGAAATGATATGTCTAATCCAATACATGATGTGGATCTTGTGATTTCTGTTGGTGGTGATGGCACTCTTCTACGGGCTAGCCATTTTTTGAATAGCTCAATTCCCGTTTTAGGTGTTAATTCAGACCCTACTTGTCCTGATGAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGACATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGTAGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCAACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTCTCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGTGGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTCGTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGGGATGCTGACAAGCCACTGCTGCATGGGTTAGTTAAGCAAGGTCAACACATACTTGTCGTTTGGTACAATGAGGAAGGCGCTGTTTATTTTGATGGTTCACATGTAATGCATTCAATTCAGCATGGAGATACACTGGAGATCTCCTCTGATGCTCCAATCTTGAAAGTTATTTTGCCAGAAAATCTGTTAAAGCAGGGATCTTAGTAATGCAATAACATTATCATCGTTATTGTGCTTGTTAATATGGTATGATGTTTGACACTTGAGTTTCTGAGAACTGTCTGATATAGATGCGTATTTATGTAATGACAGAGTTAACTTATGCTATGAAATAAAATAGTGGATGC ]
[+] EMBL BP185052 [acgaggAGACCGCACAACCCGACGGCGCAGACGCCACGCCGGGGGGCGCCGCCGCCGCCGCCGCCGCCGCCAACGCGACGAACCGCGGGTACAAGAAGGCAGGGAAGCCGAGACGAGGGGCTCCAATGGCGCTCCGCCGCGTGCTCCTCTTCGTCAAGCCCTTCGACGTCTACCCTCCCCGCCCGCTCGCCGCCGCCGCCTCCTCGCCTCCGCCCCCGCCGCCGCCGCTGCGTGTATCCAATCCCAAGGTCTTGAATTATCTGGATGATAGGTGCAGAGTTCACAAGGAAACAATCAATCTCTGCAAAAGCGTACTGCAGCGTAAATCCATTGACTGGATTTCAGTGCAGCGAAATGATATGTCTAATCCAATACATGATGTGGATCTTGTGATTTCTGTTGGTGGTGATGGCACTCTTCTACGGGCTAGCCATTTTTTGAATAGCTCAATTCCCGTTTTAGGTGTTAATTCAGACCCTACTTGTCCTGATGAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGACATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCACCCCTTGATGGTAGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCAACTTATG ]
[+] EMBL CF320309 [ GCTTGTTAATATGGTATGATGTTTGACACTTGAGTTTCTGAGAACTGTCTGATATAGATGCGTATTTATGTAATGACAGAGTTAACTTATGCTATGAAATAAAATAGTGGATGCTAATTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_6266#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence
[TCCTGATGAGGTTAGTTCTTCAGATTATTGTCAAGAACCATATGATCCATGTTTGTCAAGTTGCTTTTGGCATGCTTCCAAGCAGACTGATGCTTACCTGTATGCTTGGTTAGGTTTATATATAGATTATTCCTTTGCAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGACATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGTAGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCAACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTCTCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGTGGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTCGTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGGGATGCTGA]
[+] EMBL CF323256 [TCCTGATGAGGTTAGTTCTTCAGATTATTGTCAAGAACCATATGATCCATGTTTGTCAAGTTGCTTTTGGCATGCTTCCAAGCAGACTGATGCTTACCTGTATGCTTGGTTAGGTTTATATATAGATTATTCCTTTGCAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGACATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGTAGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCAACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTCTCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGTGGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTCGTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGGGATGCTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6266#0 ACAAACAGACCGCACAACCCGACGGCGCAGACGCCACGCCGGGGGGCGCCGCCGCCGCCG 60
consensus_6266#1 ------------------------------------------------------------
consensus_6266#0 CCGCCGCCGCCAACGCGACGAACCGCGGGTACAAGAAGGCAGGGAAGCCGAGACGAGGGG 120
consensus_6266#1 ------------------------------------------------------------
consensus_6266#0 CTCCAATGGCGCTCCGCCGCGTGCTCCTCTTCGTCAAGCCCTTCGACGTCTACCCTCCCC 180
consensus_6266#1 ------------------------------------------------------------
consensus_6266#0 GCCCGCTCGCCGCCGCCGCCTCCTCGCCTCCGCCCCCGCCGCCGCCGCTGCGTGTATCCA 240
consensus_6266#1 ------------------------------------------------------------
consensus_6266#0 ATCCCAAGGTCTTGAATTATCTGGATGATAGGTGCAGAGTTCACAAGGAAACAATCAATC 300
consensus_6266#1 ------------------------------------------------------------
consensus_6266#0 TCTGCAAAAGCGTACTGCAGCGTAAATCCATTGACTGGATTTCAGTGCAGCGAAATGATA 360
consensus_6266#1 -------------------------------------------------TCCTGATGAGG 11
* ****
consensus_6266#0 TGTCTAATCCAATACATGAT-GTGGATCTTGTGATTTCTGTTGGTGGTGATGGCACTCTT 419
consensus_6266#1 TTAGTTCTTCAGATTATTGTCAAGAACCATATGATCCATGTTTGTCAAGTTGCTTTTGGC 71
* * * ** ** * * * * * **** **** ** * ** *
consensus_6266#0 CTACGGGCTAGCCATTTTTTGAATAGCTCAATTCCCGTTTTAGGTGTTAATTCAGACCCT 479
consensus_6266#1 ATGCTTCCAAGCAGACTGATGCTTACCTGTATGCTTGGTT-AGGTTTATATATAGATTAT 130
* * * *** * ** ** ** ** * * ** **** * ** *** *
consensus_6266#0 ACTTGTCCTGATGAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGA 539
consensus_6266#1 TCCTTTGC-----AGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGA 185
* * * * ***********************************************
consensus_6266#0 CATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGT 599
consensus_6266#1 CATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGT 245
************************************************************
consensus_6266#0 AGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCA 659
consensus_6266#1 AGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCA 305
************************************************************
consensus_6266#0 ACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTC 719
consensus_6266#1 ACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTC 365
************************************************************
consensus_6266#0 TCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGT 779
consensus_6266#1 TCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGT 425
************************************************************
consensus_6266#0 GGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTC 839
consensus_6266#1 GGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTC 485
************************************************************
consensus_6266#0 GTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGG 899
consensus_6266#1 GTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGG 545
************************************************************
consensus_6266#0 GATGCTGACAAGCCACTGCTGCATGGGTTAGTTAAGCAAGGTCAACACATACTTGTCGTT 959
consensus_6266#1 GATGCTGA---------------------------------------------------- 553
********
consensus_6266#0 TGGTACAATGAGGAAGGCGCTGTTTATTTTGATGGTTCACATGTAATGCATTCAATTCAG 1019
consensus_6266#1 ------------------------------------------------------------
consensus_6266#0 CATGGAGATACACTGGAGATCTCCTCTGATGCTCCAATCTTGAAAGTTATTTTGCCAGAA 1079
consensus_6266#1 ------------------------------------------------------------
consensus_6266#0 AATCTGTTAAAGCAGGGATCTTAGTAATGCAATAACATTATCATCGTTATTGTGCTTGTT 1139
consensus_6266#1 ------------------------------------------------------------
consensus_6266#0 AATATGGTATGATGTTTGACACTTGAGTTTCTGAGAACTGTCTGATATAGATGCGTATTT 1199
consensus_6266#1 ------------------------------------------------------------
consensus_6266#0 ATGTAATGACAGAGTTAACTTATGCTATGAAATAAAATAGTGGATGCTAATTTTTGTAAA 1259
consensus_6266#1 ------------------------------------------------------------
consensus_6266#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1319
consensus_6266#1 ------------------------------------------------------------
consensus_6266#0 A 1320
consensus_6266#1 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||