cluster # 6268

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Oryza sativa
cluster # 6268 cluster # 6268 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6268#0 length = 730 sequences # 3

consensus_6268#1 length = 686 sequences # 1

consensusID : consensus_6268#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 730
fasta sequence

                              [TTTTGTCAGAACAGGTACAACTCAAACTCTAACAAGGAGAAACGCCGCTTTTACATACTGAATTTTTACATTCTAACAAACATCATAGCTAACAAACATCAGCATTAATCATACGATACAATAAGTTGCAGACCAACATTTCACAAATGACAATTGGAAATGTGTTCATGCTGATCCTCACAAAAGGCCCAAATACATAGATTTTGAAAAAGGTCTAAATATCATTTCATGGGAACAAATGCCAAGCAACACTGGTGTACTACAAAGAAACTGACTTAGCTCCTATTGGACAGTGTTTCTGCATAGAGTGGAACATAGGGAAGACACTCCAGTATACAATCTGACCCAAGAGCTTGAATAACACGTGACTCCTTATGATCCATGTCATATGCCATCAGCGTGTAGTCTCTAGTAATATAGTAAATCAAATTGCAATCCAGGTGAACTATGACCACATAGCAGAACTCGCTAGATTTGTACTTGGAGTTTATCTTCTCATACAGCATTTCGTTAGTCACACTATGCTTCAATGTCCACTCATCCTTCGAGTAGTCCTCAAGAAGCCATTATTGACAGGCTTATGGGGACAGTGTTGTATTGACTGAGGTAGTACAATTTCCCTTCGGATTGACAGATGGAACCTGGCAACCAATCACGCACTTCTTTTCAACCCTTTCCATTTTTCGGCACTTTTCGGTGNACGCCATGGTCCTCCTTTTCACATNTTACC]

[+] EMBL CA998149             [TTTTGTCAGAACAGGTACAACTCAAACTCTAACAAGGAGAAACGCCGCTTTTACATACTGAATTTTTACATTCTAACAAACATCATAGCTAACAAACATCAGCATTAATCATACGATACAATAAGTTGCAGACCAACATTTCACAAATGACAATTGGAAATGTGTTCATGCTGATCCTCACAAAAGGCCCAAATACATAGATTTTGAAAAAGGTCTAAATATCATTTCATGGGAACAAATGCCAAGCAACACTGGTGTACTACAAAGAAACTGACTTAGCTCCTATTGGACAGTGTTTCTGCATAGAGTGGAACATAGGGAAGACACTCCAGTATACAATCTGACCCAAGAGCTTGAATAACACGTGACTCCTTATGATCCATGTCATATGCCATCAGCGTGTAGTCTCTAGTAATATAGTAAATCAAATTGCAATCCAGGTGAACTATGACCACATAGCAGAACTCGCTAGATTTGTACTTGGAGTTTATCTTCTCATACAGCATTTCGTTAGTCACACTATGCTTCAATGTCCACT                                                                                                                                                                                                ]
[+] EMBL CA999250             [          ACAGGTACAACTCAAACTCTAACAAGGAGAAACGCCGCTTTTACATACTGAATTTTTACATTCTAACAAACATCATAGCTAACAAACATCAGCATTAATCATACGATACAATAAGTTGCAGACCAACATTTCACAAATGACAATTGGAAATGTGTTCATGCTGATCCTCACAAAAGGCCCAAATACATAGATTTTGAAAAAGGTCTAAATATCATTTCATGGGAACAAATGCCAAGCAACACTGGTGTACTACAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL AU100981             [                                                            ttTTTTTACATTCTAACAAACATCATAGCTAACAAACATCAGCATTAATCATACGATACAATAAGTTGCAGACCAACATTTCACAAATGACAATTGGAAATGTGTTCATGCTGATCCTCACAAAAGGCCCAAATACATAGATTTTGAAAAAGGTCTAAATATCATTTCATGGGAACAAATGCCAAGCAACACTGGTGTACTACAAAGAAACTGACTTAGCTCCTATTGGACAGTGTTTCTGCATAGAGTGGAACATAGGGAAGACACTCCAGTATACAATCTGACCCAAGAGCTTGAATAACACGTGACTCCTTATGATCCATGTCATATGCCATCAGCGTGTAGTCTCTAGTAATATAGTAAATCAAATTGCAATCCAGGTGAACTATGACCACATAGCAGAACTCGCTAGATTTGTACTTGGAGTTTATCTTCTCATACAGCAGTTCGTTAGTCACACTATGCTTCAATGTCCACTCATCCTTCGAGTAGTCCTCAAGAAGCCATTATTGACAGGCTTATGGGGACAGTGTTGTATTGACTGAGGTAGTACAATTTCCCTTCGGATTGACAGATGGAACCTGGCAACCAATCACGCACTTCTTTTCAACCCTTTCCATTTTTCGGCACTTTTCGGTGNACGCCATGGTCCTCCTTTTCACATNTTACC]




>consensus_6268#0
TTTTGTCAGAACAGGTACAACTCAAACTCTAACAAGGAGAAACGCCGCTTTTACATACTG
AATTTTTACATTCTAACAAACATCATAGCTAACAAACATCAGCATTAATCATACGATACA
ATAAGTTGCAGACCAACATTTCACAAATGACAATTGGAAATGTGTTCATGCTGATCCTCA
CAAAAGGCCCAAATACATAGATTTTGAAAAAGGTCTAAATATCATTTCATGGGAACAAAT
GCCAAGCAACACTGGTGTACTACAAAGAAACTGACTTAGCTCCTATTGGACAGTGTTTCT
GCATAGAGTGGAACATAGGGAAGACACTCCAGTATACAATCTGACCCAAGAGCTTGAATA
ACACGTGACTCCTTATGATCCATGTCATATGCCATCAGCGTGTAGTCTCTAGTAATATAG
TAAATCAAATTGCAATCCAGGTGAACTATGACCACATAGCAGAACTCGCTAGATTTGTAC
TTGGAGTTTATCTTCTCATACAGCATTTCGTTAGTCACACTATGCTTCAATGTCCACTCA
TCCTTCGAGTAGTCCTCAAGAAGCCATTATTGACAGGCTTATGGGGACAGTGTTGTATTG
ACTGAGGTAGTACAATTTCCCTTCGGATTGACAGATGGAACCTGGCAACCAATCACGCAC
TTCTTTTCAACCCTTTCCATTTTTCGGCACTTTTCGGTGNACGCCATGGTCCTCCTTTTC
ACATNTTACC

consensusID : consensus_6268#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTATGCCCAAAAAAATGGATTCAATTTGGGTCAAAATGTCTGTTGAGCATATCCTTGGCAAAGCTGCCGTTGTTGTAACGATATATTCTGCCTCACAAGGGGATTAAAGGGCACCATTTTCTGCTTTTTGGACCACCAGCAAAAAGGGCCTGATACAGAAAAGGAACAAAATACCCAGGGGCTCTTCCAATCATCAACATCGCCAGCCATGTCCCTATCGCTGTAAACCAACGAGCTGAGGATCTCCATGCTCCTCGTAACGTTACCCATAGTTCAGAGTCCCTGCTACATACCTGAAAAGATCCATGACTGACTGAAGCTAAGGTGCTCTTCTGTTCCTTATGAATGCACGCAGTTGCCATTCCTCAGCTTGAGGCTCAAAGTGCACCCCAAGAGCTTGAATAACACGTGACTCCTTATGATCCATGTCATATGCCATCAGCGCGGACCCTCTAGTAATATATGAAATCAAATTGCAGTCCAGGTGAACTATGACCCCATAGCAGCACTTCGGTAGATTTGGACTTGGAGGTTATCTTCCTCTACCCCAAGTCGTTGGGCACACTATGCCTTCACGGGCCACTCATCCTTTGAGGAGGCCTCAAGAACGCATACTGACAGGCTTTTCGGGGACAGGGGTGGATTGGCCAAGGCATGACAATTT]

[+] EMBL CA762728             [TTTTTTTTTTTTTTTTTTTTTTTTATGCCCAAAAAAATGGATTCAATTTGGGTCAAAATGTCTGTTGAGCATATCCTTGGCAAAGCTGCCGTTGTTGTAACGATATATTCTGCCTCACAAGGGGATTAAAGGGCACCATTTTCTGCTTTTTGGACCACCAGCAAAAAGGGCCTGATACAGAAAAGGAACAAAATACCCAGGGGCTCTTCCAATCATCAACATCGCCAGCCATGTCCCTATCGCTGTAAACCAACGAGCTGAGGATCTCCATGCTCCTCGTAACGTTACCCATAGTTCAGAGTCCCTGCTACATACCTGAAAAGATCCATGACTGACTGAAGCTAAGGTGCTCTTCTGTTCCTTATGAATGCACGCAGTTGCCATTCCTCAGCTTGAGGCTCAAAGTGCACCCCAAGAGCTTGAATAACACGTGACTCCTTATGATCCATGTCATATGCCATCAGCGCGGACCCTCTAGTAATATATGAAATCAAATTGCAGTCCAGGTGAACTATGACCCCATAGCAGCACTTCGGTAGATTTGGACTTGGAGGTTATCTTCCTCTACCCCAAGTCGTTGGGCACACTATGCCTTCACGGGCCACTCATCCTTTGAGGAGGCCTCAAGAACGCATACTGACAGGCTTTTCGGGGACAGGGGTGGATTGGCCAAGGCATGACAATTT]




>consensus_6268#1
TTTTTTTTTTTTTTTTTTTTTTTTATGCCCAAAAAAATGGATTCAATTTGGGTCAAAATG
TCTGTTGAGCATATCCTTGGCAAAGCTGCCGTTGTTGTAACGATATATTCTGCCTCACAA
GGGGATTAAAGGGCACCATTTTCTGCTTTTTGGACCACCAGCAAAAAGGGCCTGATACAG
AAAAGGAACAAAATACCCAGGGGCTCTTCCAATCATCAACATCGCCAGCCATGTCCCTAT
CGCTGTAAACCAACGAGCTGAGGATCTCCATGCTCCTCGTAACGTTACCCATAGTTCAGA
GTCCCTGCTACATACCTGAAAAGATCCATGACTGACTGAAGCTAAGGTGCTCTTCTGTTC
CTTATGAATGCACGCAGTTGCCATTCCTCAGCTTGAGGCTCAAAGTGCACCCCAAGAGCT
TGAATAACACGTGACTCCTTATGATCCATGTCATATGCCATCAGCGCGGACCCTCTAGTA
ATATATGAAATCAAATTGCAGTCCAGGTGAACTATGACCCCATAGCAGCACTTCGGTAGA
TTTGGACTTGGAGGTTATCTTCCTCTACCCCAAGTCGTTGGGCACACTATGCCTTCACGG
GCCACTCATCCTTTGAGGAGGCCTCAAGAACGCATACTGACAGGCTTTTCGGGGACAGGG
GTGGATTGGCCAAGGCATGACAATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6268#0      -----------------------------------------------TTTTGTCAGAACA 13
consensus_6268#1      TTTTTTTTTTTTTTTTTTTTTTTTATGCCCAAAAAAATGGATTCAATTTGGGTCAAAATG 60
                                                                     **  **** **  

consensus_6268#0      GGTACAACTCAAACTCTAACAAGGAGAAACGCCGCTTTTACATACTGAATTTTTACATTC 73
consensus_6268#1      TCTGTTGAGCATATCCT---TGGCAAAGCTGCCGTTGTTGTA-ACGATATATTCTGCCTC 116
                        *      ** *  **     * * *   **** * **  * **   ** **     **

consensus_6268#0      TAACAAACATCATAGCTAACAAACATCAGCATT---AATCATACGATACAATAAGTTGCA 130
consensus_6268#1      ACAAGGGGATTAAAGGGCACCATTTTCTGCTTTTTGGACCAC-CAGCAAAAAGGGCCTGA 175
                        *     ** * **   ** *   ** ** **    * **  *   * **   *    *

consensus_6268#0      GACCAACATTTCACAAATGACAATTGGAAATGTGT--TCATGCTGATCCTCACAAAAGGC 188
consensus_6268#1      TACAGAAAAGGAACAAAATACCCAGGGGCTCTTCCAATCATCAACATCGCCAGCCATGTC 235
                       **  * *    *****  **    **     *    ****    ***  **   * * *

consensus_6268#0      CCAAATAC-ATAGATTTTGAAA---AAGGTCTAAATATCATT--TCATGGGAACAAATGC 242
consensus_6268#1      CCTATCGCTGTAAACCAACGAGCTGAGGATCTCCATGCTCCTCGTAACGTTACCCATAGT 295
                      ** *   *  ** *      *    * * ***  **     *  * * *  * * *  * 

consensus_6268#0      CAAGCAACACTGGTGTA---CTACAAAGAAACTGACTTAGCTCCTATTGGACAGTGTTTC 299
consensus_6268#1      TCAGAGTCCCTGCTACATACCTGAAAAGATCCATGACTGACTGAAGCTAAGGTGCTCTTC 355
                        **   * *** *  *   **  *****  *     *  **     *     *   ***

consensus_6268#0      TGCATAGAGTGGA-ACATAGGGAAGACACTCC---------AGTATACAATCTGACCCAA 349
consensus_6268#1      TGTTCCTTATGAATGCACGCAGTTGCCATTCCTCAGCTTGAGGCTCAAAGTGCACCCCAA 415
                      **       ** *  **    *  * ** ***          *   * * *    *****

consensus_6268#0      GAGCTTGAATAACACGTGACTCCTTATGATCCATGTCATATGCCATCAGCGTGTAGTCTC 409
consensus_6268#1      GAGCTTGAATAACACGTGACTCCTTATGATCCATGTCATATGCCATCAGCGCGGACCCTC 475
                      *************************************************** * *  ***

consensus_6268#0      TAGTAATATAGTAAATCAAATTGCAATCCAGGTGAACTATGACCACATAGCAGAACT-CG 468
consensus_6268#1      TAGTAATATATGAAATCAAATTGCAGTCCAGGTGAACTATGACCCCATAGCAGCACTTCG 535
                      **********  ************* ****************** ******** *** **

consensus_6268#0      CTAGATTTGTACTTGGAGTTTATCTTCTCATACAGCATTTCGTTAGTCACACTATGC-TT 527
consensus_6268#1      GTAGATTTGGACTTGGAGGTTATCTTCCTCTACCCCAAGTCGTTGGGCACACTATGCCTT 595
                       ******** ******** ********   ***  **  ***** * ********** **

consensus_6268#0      CAATGTCCACTCATCCTTCGAGTAGTCCTCAAGAAGCCATTATTGACAGGCTTAT-GGGG 586
consensus_6268#1      CACGGGCCACTCATCCTTTGAGGAGGCCTCAAGAACGCAT-ACTGACAGGCTTTTCGGGG 654
                      **  * ************ *** ** *********  *** * ********** * ****

consensus_6268#0      ACAGTGTTGTATTGACTGAGGTAGTACAATTTCCCTTCGGATTGACAGATGGAACCTGGC 646
consensus_6268#1      ACAGGGGTGGATTGGCCAAGGCATGACAATTT---------------------------- 686
                      **** * ** **** *  *** *  *******                            

consensus_6268#0      AACCAATCACGCACTTCTTTTCAACCCTTTCCATTTTTCGGCACTTTTCGGTGNACGCCA 706
consensus_6268#1      ------------------------------------------------------------
                                                                                  

consensus_6268#0      TGGTCCTCCTTTTCACATNTTACC 730
consensus_6268#1      ------------------------