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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1398 fasta sequence
[GCAGCTAGCGCTTCTATCTGAAACTCTGAATATACACGGATATTTAGGGAGTAGAGGAGTGCAGCAAGCGCGCACGGGCAGACCATGGATCAGCCGCATGAACCAGCCGGCAGCGAGCCTAGCGAAAATGTTCAGAACATCGAGGAAGACAATGAGTACCTGAACAACAAGCGCGGGTGGCTGATGGCGGTGGCCACGCTGTTCGTGGGCATGGCATTCCAGGCGGCGATACAGTTGCCTGCCTGGTTCCCCGATGACTGGCCTCAGGCGTTTAGCTCCCACAACATGAAGCATAGCGGTATAATATTCCGAGCCACGGTCGCCTCTGCTCCTTCCCCGATAAGTCCTCAACAACACGCCGCCACCACCCTCACCGAGGGCCAAATGAGGGGGATACGGTGGTATATCATGTTCAACACGGTGACCTTCACGATTGCCCTGGCGCTTCTGATCACGCTGGTGGCGGTAGGGAGGTCCTTGGCTAGTCATTCCATGAGACTCATGAATGCCATATTGTTCACGGTGATCATTAGCACCAGTTGCACCTTTGTCTTGGCCATCTCGAGTGATTGGACTGTCATCAGGTGGATGTTACCTGTGCTTTTGGTCCTTGGCTCCTATACCCTCTTTATCAGCTTAGTATGGCCCAAGATCATCGAGTATCGGAAGGAAAAGAAAAGACAGCGAGAGGCTCAATCGAACACAGCATCGCCGCCACCTTAATTTATTTTCAATGTTCAGGATCTCTTAATATCCTAGGTAGTGTTAGTGTTACAAACTCATCACTATCAAGGTTTATCCCTTTGAGAACTGATGTACGTAACATGGGATGGTACTAGCCCGGAGATCGAGCCTTCAGCCTTGGATATGAATTTGATCAAGATGTGTTGTCTTACAAATAACAGGAAATTCGCATGGATGTGCATGATGCAAATGTAGTGAATTTATACTTGATTTGAACGTTTGATGTCGGCGATGGTTTTGACAGTGTTTGAGAGAGCACTGACAGTATTCTACCAGAGGTCACCGGTCAGACCAAGAGCATGTACTACAGAGTTTCTGTGAATTGGAGTATTGGACCAATCATGCAACAACTTTGTAACCGAGAAACAGGGATTGAGGCCATGGGCCATTGCGTTGGATGATGATTCAGGAGCCTACAGATTGGCTCTAGACTCCACCTCTCTCTGAATCCGCCGCCGGTCGATGATATGCAAACCTTGGATGATTGAATACAGTTTGGTACACCTTCTCATTCTGCCAAACTCAAACTCACCATGTACTTCACCTGCTCTGCGATTGTAACTTGTTCTCGACTTCATGTGACAGTCTAGCTAGTTCAGCTAGATATGATATTGCAGTTTTGGCAAGGAATACCAAACTAGTAACAGCAGAATA]
[+] EMBL AK060646 [GCAGCTAGCGCTTCTATCTGAAACTCTGAATATACACGGATATTTAGGGAGTAGAGGAGTGCAGCAAGCGCGCACGGGCAGACCATGGATCAGCCGCATGAACCAGCCGGCAGCGAGCCTAGCGAAAATGTTCAGAACATCGAGGAAGACAATGAGTACCTGAACAACAAGCGCGGGTGGCTGATGGCGGTGGCCACGCTGTTCGTGGGCATGGCATTCCAGGCGGCGATACAGTTGCCTGCCTGGTTCCCCGATGACTGGCCTCAGGCGTTTAGCTCCCACAACATGAAGCATAGCGGTATAATATTCCGAGCCACGGTCGCCTCTGCTCCTTCCCCGATAAGTCCTCAACAACACGCCGCCACCACCCTCACCGAGGGCCAAATGAGGGGGATACGGTGGTATATCATGTTCAACACGGTGACCTTCACGATTGCCCTGGCGCTTCTGATCACGCTGGTGGCGGTAGGGAGGTCCTTGGCTAGTCATTCCATGAGACTCATGAATGCCATATTGTTCACGGTGATCATTAGCACCAGTTGCACCTTTGTCTTGGCCATCTCGAGTGATTGGACTGTCATCAGGTGGATGTTACCTGTGCTTTTGGTCCTTGGCTCCTATACCCTCTTTATCAGCTTAGTATGGCCCAAGATCATCGAGTATCGGAAGGAAAAGAAAAGACAGCGAGAGGCTCAATCGAACACAGCATCGCCGCCACCTTAATTTATTTTCAATGTTCAGGATCTCTTAATATCCTAGGTAGTGTTAGTGTTACAAACTCATCACTATCAAGGTTTATCCCTTTGAGAACTGATGTACGTAACATGGGATGGTACTAGCCCGGAGATCGAGCCTTCAGCCTTGGATATGAATTTGATCAAGATGTGTTGTCTTACAAATAACAGGAAATTCGCATGGATGTGCATGATGCAAATGTAGTGAATTTATACTTGATTTGAACGTTTGATGTCGGCGATGGTTTTGACAGTGTTTGAGAGAGCACTGACAGTATTCTACCAGAGGTCACCGGTCAGACCAAGAGCATGTACTACAGAGTTTCTGTGAATTGGAGTATTGGACCAATCATGCAACAACTTTGTAACCGAGAAACAGGGATTGAGGCCATGGGCCATTGCGTTGGATGATGATTCAGGAGCCTACAGATTGGCTCTAGACTCCACCTCTCTCTGAATCCGCCGCCGGTCGATGATATGCAAACCTTGGATGATTGAATACAGTTTGGTACACCTTCTCATTCTGCCAAACTCAAACTCACCATGTACTTCACCTGCTCTGCGATTGTAACTTGTTCTCGACTTCATGTGACAGTCTAGCTAGTTCAGCTAGATATGATATTGCAGTTTTGGCAAGGAATACCAAACTAGTAACAGCAGAATA]
[+] EMBL CA755782 [ AATATACACGGATATTTAGGGAGTAGAGGAGTGCAGCAAGCGCGCACGGGCAGACCATGGATCAGCCGCATGAACCAGCCGGCAGCGAGCCTAGCGAAAATGTTCAGAACATCGAGGAAGACAATGAGTACCTGAACAACAAGCGCGGGTGGCTGATGGCGGTGGCCACGCTGTTCGTGGGCATGGCATTCCAGGCGGCGATACAGTTGCCTGCCTGGTTCCCCGATGACTGGCCTCAGGCGTTTAGCTCCCACAACATGAAGCATAGCGGTATAATATTCCGAGCCACGGTCGCCTCTGCTCCTTCCCCGATAAGTCCTCAACAACACGCCGCCACCACCCTCACCGAGGGCCAAATGAGGGGGATACGGTGGTATATCATGTTCAACACGGTGACCTTCACGATTGCCCTGGCGCTTCTGATCACGCTGGTGGCGGTAGGGAGGTCCTTGGCTAGTCATTCCATGAGACTCATGAATGCCATATTGTTCACGGTGATCATTACCACCAGTTGCACCTTTGTCTTGGCCATCTCGAGTGATTGGACTGTCATCAGGTGCATGTTACCTGTGCTTTTGCTCCTTGGCTCCCATACCCTCTT ]
consensusID : consensus_6274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 886 fasta sequence
[ACGAACCACCACATCATCTTCTTAGCCACCAGTTAGCCCAGTCCACCACCCCACAGTTCCTCCCCACGCACACCACCAGGCCGGGCGGAGAGAGGCAGGAGCACGCCGCCAACGGGCGGCAGTCCTCCCCTCGCCGGCACGCGGCCCTCGCGCCACCGTCGCCGCCGCAACACGGCCCTCGAACTGCACCGCCACCACCGCAGCGCGGCCCTCGCGCCGCTGTCGTCGTCGAAGCACGGCCCACCCTCCGCCGCCGTCGTGGCAGTGCGGCCCTCGCTCCGCCGCTGCTGCCGCCGCCAACGGCCTTCGGCCGCAGCACTCCGTGCCCACGACGGAGCCGTCGCCCTGCACCGCGCGGCCAGATCCGGCCGCGGGAGCACCGGATCTGGCCACCGCGGTGCCGGATCCCCAGCCTCCCTCGCCGTCGAGCGCGCCTCCCTCCGCCTGGCTCGCCACGCTCCGCCCCGTCTCCCTCGCGCCAGAGACGACGCGTCGCCGTGGTTACGCCTCGCCGCCGCCATCCCAGCTCCCCGCACGGTTGTCCAGCGACTAACTCCGACGGCGGCGAGACAGAGAGAGGGGAGGAGGGTGGGTGGCGGCGGCGGCGGCTAGGGTTTGCCCCTGAGCCTCTGCTGTTGGCTACAGATTGGCTCTCCAGACTCCACTTCTTTCTGAATCCACGCCGGTCAATGATATGCAAACCTTGGATGATTGAATACAGTTTGGTACAGATTCTCATTCTGCCAAGCTCAAGCTCAGCATGTACTTCACCTGCTATGCTATTGTACCTTGTTCACGACTTCATGTGATAGGCTAGCTAGTTTAGCTAGATATGATATTGCAGTTTTGGCAAGGGATACCAAACTAGTAACAGCAGAATAATTAT]
[+] EMBL AK073993 [ACGAACCACCACATCATCTTCTTAGCCACCAGTTAGCCCAGTCCACCACCCCACAGTTCCTCCCCACGCACACCACCAGGCCGGGCGGAGAGAGGCAGGAGCACGCCGCCAACGGGCGGCAGTCCTCCCCTCGCCGGCACGCGGCCCTCGCGCCACCGTCGCCGCCGCAACACGGCCCTCGAACTGCACCGCCACCACCGCAGCGCGGCCCTCGCGCCGCTGTCGTCGTCGAAGCACGGCCCACCCTCCGCCGCCGTCGTGGCAGTGCGGCCCTCGCTCCGCCGCTGCTGCCGCCGCCAACGGCCTTCGGCCGCAGCACTCCGTGCCCACGACGGAGCCGTCGCCCTGCACCGCGCGGCCAGATCCGGCCGCGGGAGCACCGGATCTGGCCACCGCGGTGCCGGATCCCCAGCCTCCCTCGCCGTCGAGCGCGCCTCCCTCCGCCTGGCTCGCCACGCTCCGCCCCGTCTCCCTCGCGCCAGAGACGACGCGTCGCCGTGGTTACGCCTCGCCGCCGCCATCCCAGCTCCCCGCACGGTTGTCCAGCGACTAACTCCGACGGCGGCGAGACAGAGAGAGGGGAGGAGGGTGGGTGGCGGCGGCGGCGGCTAGGGTTTGCCCCTGAGCCTCTGCTGTTGGCTACAGATTGGCTCTCCAGACTCCACTTCTTTCTGAATCCACGCCGGTCAATGATATGCAAACCTTGGATGATTGAATACAGTTTGGTACAGATTCTCATTCTGCCAAGCTCAAGCTCAGCATGTACTTCACCTGCTATGCTATTGTACCTTGTTCACGACTTCATGTGATAGGCTAGCTAGTTTAGCTAGATATGATATTGCAGTTTTGGCAAGGGATACCAAACTAGTAACAGCAGAATAATTAT]
[+] EMBL CA754033 [ AGGCAGGAGCACGCCGCCAACGGGCGGCAGTCCTCCCCTCGCCGGCACGCGGCCCTCGCGCCACCGTCGCCGCCGCAACACGGCCCTCGAACTGCACCGCCACCACCGCAGCGCGGCCCTCGCGCCGCTGTCGTCGTCGAAGCACGGCCCACCCTCCGCCGCCGTCGTGGCAGTGCGGCCCTCGCTCCGCCGCTGCTGCCGCCGCCAACGGCCTTCGGCCGCAGCACTCCGTGCCCACGACGGAGCCGTCGCCCTGCACCGCGCGGCCAGATCCGGCCGCGGGAGCACCGGATCTGGCCACCGCGGTGCCGGATCCCCAGCCTCCCTCGCCGTCGAGCGCGCCTCCCTCCGCCTGGCTCGCCACGCTCCGCCCCGTCTCCCTCGCGCCAGAGACGACGCGTCGCCGTGGTTACGCCTCGCCGCCGCCATCCCAGCTCCCCGCACGGTTGTCCAGCGACTAACTCCGACGGCGGCGAGACAGAGAGAGGGGAGGAGGGTGGGTGGCGGCGGCGGCGGCTAGGGTTTGCCCCTGAGCCTCTGCTGTTGGCTACAGATTGGCTCTCCAGACTCCACTTCTTTCTGAATCCACGCCGGTCAATGATATGCANACC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6274#0 GCAGCTAGCGCTTCTATCTGAAACTCTGAATATACACGGATATTTAGGGAGTAGAGGAGT 60
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 GCAGCAAGCGCGCACGGGCAGACCATGGATCAGCCGCATGAACCAGCCGGCAGCGAGCCT 120
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 AGCGAAAATGTTCAGAACATCGAGGAAGACAATGAGTACCTGAACAACAAGCGCGGGTGG 180
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 CTGATGGCGGTGGCCACGCTGTTCGTGGGCATGGCATTCCAGGCGGCGATACAGTTGCCT 240
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 GCCTGGTTCCCCGATGACTGGCCTCAGGCGTTTAGCTCCCACAACATGAAGCATAGCGGT 300
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 ATAATATTCCGAGCCACGGTCGCCTCTGCTCCTTCCCCGATAAGTCCTCAACAACACGCC 360
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 GCCACCACCCTCACCGAGGGCCAAATGAGGGGGATACGGTGGTATATCATGTTCAACACG 420
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 GTGACCTTCACGATTGCCCTGGCGCTTCTGATCACGCTGGTGGCGGTAGGGAGGTCCTTG 480
consensus_6274#1 ------------------------------------------------------------
consensus_6274#0 GCTAGTCATTCCATGAGACTCATGAATGCCATATTGTTCACGGTGATCATTAGCACCAGT 540
consensus_6274#1 ACGAACCACCACATCATCTTCTTAGCCACCAGTTAGCCCA----GTCCACCACCCCACAG 56
* * ** *** * ** * *** * * ** * ** * * *
consensus_6274#0 TGCACCTTTGTCTTGGCCATCTCGAGTGATTGGACTGTCATCAGGTGGATGTTACCTGTG 600
consensus_6274#1 TTCCTCCCCACGCACACCACCA-GGCCGGGCGGAGAGA-GGCAGGAGCACGCCGCCAACG 114
* * * *** * * * *** * **** * * * ** *
consensus_6274#0 CTTTTGGTCCTTGGCTCCTATACCCTCTTTATCAGCTTAGTATGGCCCAAGATCATCGAG 660
consensus_6274#1 ------------GGCGGCAGTCCTCCCCTCGCCGGC---ACGCGGCCCTCGCGCCACCGT 159
*** * * * * * * * ** ***** * * *
consensus_6274#0 TATCGGAAGGAAAAGAAAAGACAGCGAGAGGCTCAATCGAACACAGCATCGCCGCCACCT 720
consensus_6274#1 CGCCGCCGCAACACG----GCCCTCGAACTGCACCGCC-ACCACCGCAGCGCGGC--CCT 212
** * * * * * *** ** * * * *** *** *** ** ***
consensus_6274#0 TAATTTATTTTCAATGTTCAGG-ATCTCTTAATATCCTAGGTAGTGTTAGTGTTACAAAC 779
consensus_6274#1 CGCGCCGCTGTCGTCGTCGAAGCACGGCCCACCCTCCGCCGCCGTCGTGGCAGTGCGGCC 272
* ** ** * * * * * *** * ** * * * * *
consensus_6274#0 TCATCACTATCAAGGTTTATCCCTTTGAGAACTGATGTACGTAACATGGGATGGTACTAG 839
consensus_6274#1 CTCGCTCCGCCGCTGCTGCCGCCGCCAACGGCCTTCGGCCGCAGCACTCCGTG--CCCAC 330
* * * * * ** * * * ** * ** ** * *
consensus_6274#0 CCCGGAGATCGAGCCTTCAGCCTTGGATATGAATTTGATCA-AGATGTGTTGTCTTACAA 898
consensus_6274#1 GACGGAGCCGTCGCCCTGCACCGCGCGGCCAGATCCGGCCGCGGGAGCACCGGAT--CTG 388
***** *** * ** * ** * * * * * * *
consensus_6274#0 ATAACAGGAAATTCGCATGGATGTGCATGATGCAAATGTAGTGAATTTATACTTGATTTG 958
consensus_6274#1 GCCACCGCGGTGCCGGATCCCCAGCCTCCCTCGCCGTCGAGCGCGCCTCCCTCCGCCTGG 448
** * ** ** * * * ** * * * * *
consensus_6274#0 AACGTTTGATGTCGGCGATGGTTTTGACAGTGTTTGAGAGAGCAC-TGACAGTATTCTAC 1017
consensus_6274#1 CTCGCCACGCTCCGCC--CCGTCTCCCTCGCGCCAGAGACGACGCGTCGCCGTGGT-TAC 505
** ** * ** * * * **** * * * * ** * ***
consensus_6274#0 CAGAGGTCACCGGTCAGACCAAGAGCATGTACTACAGAGTTTCTGTGAATTGGAGTATTG 1077
consensus_6274#1 GCCTCGCCGCCG-CCATCCCAGCTCCCCGCACGGTTGTCCAGCGACTAACTCCGACGGCG 564
* * *** ** *** * * ** * * ** * *
consensus_6274#0 GACCAATCATGCAACAACTTTGTAACCGAGAAACAGGGATTGAGGCCATGGGCCATTGCG 1137
consensus_6274#1 G-CGAGACAGAGAGAGGGGAGGAGGGTGGGTGGCGGCGGCGGCGGCTAGGGT---TTGCC 620
* * * ** * * * * * * * * *** * ** ****
consensus_6274#0 TTGGATGATGATTCAGGAGCCTACAGATTGGCTCT--AGACTCCACCTCTCTCTGAATCC 1195
consensus_6274#1 CCTGA-GCCTCTGCTGTTGGCTACAGATTGGCTCTCCAGACTCCACTTCTTTCTGAATCC 679
** * * * * * *************** ********* *** *********
consensus_6274#0 GCCGCCGGTCGATGATATGCAAACCTTGGATGATTGAATACAGTTTGGTACACCTTCTCA 1255
consensus_6274#1 AC-GCCGGTCAATGATATGCAAACCTTGGATGATTGAATACAGTTTGGTACAGATTCTCA 738
* ******* ***************************************** ******
consensus_6274#0 TTCTGCCAAACTCAAACTCACCATGTACTTCACCTGCTCTGCGATTGTAACTTGTTCTCG 1315
consensus_6274#1 TTCTGCCAAGCTCAAGCTCAGCATGTACTTCACCTGCTATGCTATTGTACCTTGTTCACG 798
********* ***** **** ***************** *** ****** ******* **
consensus_6274#0 ACTTCATGTGACAGTCTAGCTAGTTCAGCTAGATATGATATTGCAGTTTTGGCAAGGAAT 1375
consensus_6274#1 ACTTCATGTGATAGGCTAGCTAGTTTAGCTAGATATGATATTGCAGTTTTGGCAAGGGAT 858
*********** ** ********** ******************************* **
consensus_6274#0 ACCAAACTAGTAACAGCAGAATA----- 1398
consensus_6274#1 ACCAAACTAGTAACAGCAGAATAATTAT 886
***********************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||