cluster # 6275

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Oryza sativa
cluster # 6275 cluster # 6275 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6275#0 length = 774 sequences # 3

consensus_6275#1 length = 607 sequences # 1

consensusID : consensus_6275#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 774
fasta sequence

                              [TGCAATTCGCGACGCGATCCGTCTCTCGCTCGATCGCCATGGCGGCCATGAGTGACACTGGCTCGAGCTTGGCGCAGTGGGCCGAGCTGTACCACGACGCGTCGGCTGCTCACGGCGGCGTGGTGGCGAACGGTGCGGCGGCGGCGGCGACGAGCCCGGCGTCGCCGGCGGGATCGACAGGCGGGAGCCCGACGCGGG-CGCCGGGGGTGGAGGGGCCGCGCGTGGGGAAGCCGGCGAGGAGGCGGTCCAGGGCGTCGCGGCGC-GCGCCCGTGACGCTGCTCAACACGGACACCACCAACTTCCGCGCCATGGTGCAGCAGATCACCGGCATCCCGGCGCCGCCCGCGGGCGCGTTCGCGGGGCCCGGCGGCGTTCCGGTCATCAACTTCGGCTCCGACTACGGCTTCACCGGCGCCGTCATTCCCTTCTCCGACCACCTCCAACCGCGCCGGCCGACGTTCCAGGACCACCAACAGCTCCTCCGACCGCAGCAGCAGTACACCGGCGCACCGTTCGGTTACGGCAACCTGCAGCAAGCCGGCGGCGCCGGCACCGGCGCCGGCGACATGTTCAGCCACGCGCTGAGCTCGGCCGAGGACAGGTTGCTCCTGCAGAGCCTCCAGTCAGCTCAGATGCCTACTTCCGCCGCTAACCACAGCGCTAATGGTTACTTCGCCTAATTAACCAACGGTTAATCGAAGACACATCACAAGCAAAGAAGATACATGGACCAGTTGTGTTTAACCCCCTACAAGTTAATTTTACCCTCTCCTC]

[+] EMBL AK108002             [TGCAATTCGCGACGCGATCCGTCTCTCGCTCGATCGCCATGGCGGCCATGAGTGACACTGGCTCGAGCTTGGCGCAGTGGGCCGAGCTGTACCACGACGCGTCGGCTGCTCACGGCGGCGTGGTGGCGAACGGTGCGGCGGCGGCGGCGACGAGCCCGGCGTCGCCGGCGGGATCGACAGGCGGGAGCCCGACGCGGG CGCCGGGGGTGGAGGGGCCGCGCGTGGGGAAGCCGGCGAGGAGGCGGTCCAGGGCGTCGCGGCGC GCGCCCGTGACGCTGCTCAACACGGACACCACCAACTTCCGCGCCATGGTGCAGCAGATCACCGGCATCCCGGCGCCGCCCGCGGGCGCGTTCGCGGGGCCCGGCGGCGTTCCGGTCATCAACTTCGGCTCCGACTACGGCTTCACCGGCGCCGTCATTCCCTTCTCCGACCACCTCCAACCGCGCCGGCCGACGTTCCAGGACCACCAACAGCTCCTCCGACCGCAGCAGCAGTACACCGGCGCACCGTTCGGTTACGGCAACCTGCAGCAAGCCGGCGGCGCCGGCACCGGCGCCGGCGACATGTTCAGCCACGCGCTGAGCTCGGCCGAGGACAGGTTGCTCCTGCAGAGCCTCCAGTCAGCTCAGATGCCTACTTCCGCCGCTAACCACAGCGCTAATGGTTACTTCGCCTAATTAACCAACGGTTAATCGAAGACACATCACAAGCAAAGAAGATACATGGACCAGTTGTGTTTAACCCCCTACAAGTTAATTTTACCCTCTCCTC]
[+] EMBL CF196748             [                    GTCTCTCGCTCGATCGCCATGGCGGCCATGAGTGACACTGGCTCGAGCTTGGCGCAGTGGGCCGAGCTGTACCACGACGCGTCGGCTGCTCACGGCGGCGTGGTGGCGAACGGTGCGGCGGCCGCGGnnnn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB664722             [                                                                                                                                                                    ggGGCAGGATCCAAAGGCGGTAGACGGACCCGGGACCCCGGGGG GGAGGGGCCTCCCGGGGGGAAGCCGGCGAGGAGGCGGTCCAGGGCGTCGCGGCGCATCGCCCGTGACGCTGCTCAACACGGACACCAGCAACTTCCGCGCCATGGTGCAGCAGGTCACCGGCATCCCGGCGCCGCCCGCGGGCGCGTTCGCGGGGCCCGGCGGCGTTCCGGTCATCAACTTCGGCTCCGACTACGGGTTCACCGGCGCCGTCCTTCCCTTCTCCGACCAACTCCAACCGCGCCGGTCGACGTTCCAGGACCACCAACAGCTCCTCCGACCGCAGCAGCAGTACACCGGCGCACCGTTCGGTTACGGCAACCTGCAGCAAGCCGGCGGCGCCGGCACCGGCGCCGGTGACATGTTCAGCCACGCTCTGATCTCGTTCGAGGACAG                                                                                                                                                                             ]




>consensus_6275#0
TGCAATTCGCGACGCGATCCGTCTCTCGCTCGATCGCCATGGCGGCCATGAGTGACACTG
GCTCGAGCTTGGCGCAGTGGGCCGAGCTGTACCACGACGCGTCGGCTGCTCACGGCGGCG
TGGTGGCGAACGGTGCGGCGGCGGCGGCGACGAGCCCGGCGTCGCCGGCGGGATCGACAG
GCGGGAGCCCGACGCGGGCGCCGGGGGTGGAGGGGCCGCGCGTGGGGAAGCCGGCGAGGA
GGCGGTCCAGGGCGTCGCGGCGCGCGCCCGTGACGCTGCTCAACACGGACACCACCAACT
TCCGCGCCATGGTGCAGCAGATCACCGGCATCCCGGCGCCGCCCGCGGGCGCGTTCGCGG
GGCCCGGCGGCGTTCCGGTCATCAACTTCGGCTCCGACTACGGCTTCACCGGCGCCGTCA
TTCCCTTCTCCGACCACCTCCAACCGCGCCGGCCGACGTTCCAGGACCACCAACAGCTCC
TCCGACCGCAGCAGCAGTACACCGGCGCACCGTTCGGTTACGGCAACCTGCAGCAAGCCG
GCGGCGCCGGCACCGGCGCCGGCGACATGTTCAGCCACGCGCTGAGCTCGGCCGAGGACA
GGTTGCTCCTGCAGAGCCTCCAGTCAGCTCAGATGCCTACTTCCGCCGCTAACCACAGCG
CTAATGGTTACTTCGCCTAATTAACCAACGGTTAATCGAAGACACATCACAAGCAAAGAA
GATACATGGACCAGTTGTGTTTAACCCCCTACAAGTTAATTTTACCCTCTCCTC

consensusID : consensus_6275#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [CGCGGAAATTCCCCGACGGGATTTCCACGGCGACTTGAGGGGTATAGGGCACCGAAGAGGCAAGTCCCGCCAGGAGCCGGTCCAGGGATTCCGGGGGCGACTGCCGTGACGTTTATCAACACGGACTCCACCATTATCCGGTCCATGGTGCAGCAGTTCTCCGATCATCCCGTCTCCGCCCGCGGGGCGCGTTCGCGGGGCCCGGCGGCGTTCCGGTCATCAACTTCGGCTCCGACTACGGCTTCACCGGCGCCGTCCTTCCCTTCTCCGACCACCTCCAACCGCGCCGGCCGACGTTCCAGGACCACCAACAGTTCCTCCGACCGCAGCAGCAGTACACCGGCGCACCGTTCGGTTACGGCAACCTGCAGCAAGCCGGCGGCGCCGGCACCGGCGCCGGCGACATGTTCAGCCACGCGCTGAGCTCGGCCGAGGACAGGTTGCTCCTGCAGAGCCTCCAGTCAGCTCAGATGCCTACTTCCGCCGCTAACCACAGCGTTAATGGTTACTTCGCCTAATTAACCAACGGTTAATCGAAGACACATCACAAGCAAAGAAGATTCATGGACCAGTTGTGTTTAACCCCCTCCAAAAAAAAAAAAAAAAA]

[-] EMBL CA754005             [CGCGGAAATTCCCCGACGGGATTTCCACGGCGACTTGAGGGGTATAGGGCACCGAAGAGGCAAGTCCCGCCAGGAGCCGGTCCAGGGATTCCGGGGGCGACTGCCGTGACGTTTATCAACACGGACTCCACCATTATCCGGTCCATGGTGCAGCAGTTCTCCGATCATCCCGTCTCCGCCCGCGGGGCGCGTTCGCGGGGCCCGGCGGCGTTCCGGTCATCAACTTCGGCTCCGACTACGGCTTCACCGGCGCCGTCCTTCCCTTCTCCGACCACCTCCAACCGCGCCGGCCGACGTTCCAGGACCACCAACAGTTCCTCCGACCGCAGCAGCAGTACACCGGCGCACCGTTCGGTTACGGCAACCTGCAGCAAGCCGGCGGCGCCGGCACCGGCGCCGGCGACATGTTCAGCCACGCGCTGAGCTCGGCCGAGGACAGGTTGCTCCTGCAGAGCCTCCAGTCAGCTCAGATGCCTACTTCCGCCGCTAACCACAGCGTTAATGGTTACTTCGCCTAATTAACCAACGGTTAATCGAAGACACATCACAAGCAAAGAAGATTCATGGACCAGTTGTGTTTAACCCCCTCCAAAAAAAAAAAAAAAAA]




>consensus_6275#1
CGCGGAAATTCCCCGACGGGATTTCCACGGCGACTTGAGGGGTATAGGGCACCGAAGAGG
CAAGTCCCGCCAGGAGCCGGTCCAGGGATTCCGGGGGCGACTGCCGTGACGTTTATCAAC
ACGGACTCCACCATTATCCGGTCCATGGTGCAGCAGTTCTCCGATCATCCCGTCTCCGCC
CGCGGGGCGCGTTCGCGGGGCCCGGCGGCGTTCCGGTCATCAACTTCGGCTCCGACTACG
GCTTCACCGGCGCCGTCCTTCCCTTCTCCGACCACCTCCAACCGCGCCGGCCGACGTTCC
AGGACCACCAACAGTTCCTCCGACCGCAGCAGCAGTACACCGGCGCACCGTTCGGTTACG
GCAACCTGCAGCAAGCCGGCGGCGCCGGCACCGGCGCCGGCGACATGTTCAGCCACGCGC
TGAGCTCGGCCGAGGACAGGTTGCTCCTGCAGAGCCTCCAGTCAGCTCAGATGCCTACTT
CCGCCGCTAACCACAGCGTTAATGGTTACTTCGCCTAATTAACCAACGGTTAATCGAAGA
CACATCACAAGCAAAGAAGATTCATGGACCAGTTGTGTTTAACCCCCTCCAAAAAAAAAA
AAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6275#0      TGCAATTCGCGACGCGATCCGTCTCTCGCTCGATCGCCATGGCGGCCATGAGTGACACTG 60
consensus_6275#1      ------------------------------------------------------------
                                                                                  

consensus_6275#0      GCTCGAGCTTGGCGCAGTGGGCCGAGCTGTACCACGACGCGTCGGCTGCTCACGGCGGCG 120
consensus_6275#1      ------------------------------------------------------------
                                                                                  

consensus_6275#0      TGGTGGCGAACGGTGCGGCGGCGGCGGCGACGAGCCCGGCGTCGCCGGCGGGATCGACAG 180
consensus_6275#1      ---------------------------------------------CGCGGAAATTCCCCG 15
                                                                   **  *  **   * *

consensus_6275#0      GCGGGAGCCCGACGCGGGCGCCGGGGGTGGAGGGGCCGCGCGTGGGGAAGCCGGCGAGGA 240
consensus_6275#1      ACGGGATTTCCACGGCGACTTGAGGGGTATAGGGCACCGAAGAGGCAAGTCCCGCCAGGA 75
                       *****   * ***  * *    *****  ****  *    * **  *  ** ** ****

consensus_6275#0      GGCGGTCCAGGGCGTCGCGGCGCG-CGCCCGTGACGCTGCTCAACACGGACACCACCAAC 299
consensus_6275#1      GCCGGTCCAGGGATTCCGGGGGCGACTGCCGTGACGTTTATCAACACGGACTCCACCATT 135
                      * **********  **  ** *** *  ******** *  *********** ******  

consensus_6275#0      TTCCGCGCCATGGTGCAGCAGATCACCGG-CATCCCGGCGCCGCCCGCGGG-CGCGTTCG 357
consensus_6275#1      ATCCGGTCCATGGTGCAGCAGTTCTCCGATCATCCCGTCTCCGCCCGCGGGGCGCGTTCG 195
                       ****  ************** ** ***  ******* * *********** ********

consensus_6275#0      CGGGGCCCGGCGGCGTTCCGGTCATCAACTTCGGCTCCGACTACGGCTTCACCGGCGCCG 417
consensus_6275#1      CGGGGCCCGGCGGCGTTCCGGTCATCAACTTCGGCTCCGACTACGGCTTCACCGGCGCCG 255
                      ************************************************************

consensus_6275#0      TCATTCCCTTCTCCGACCACCTCCAACCGCGCCGGCCGACGTTCCAGGACCACCAACAGC 477
consensus_6275#1      TCCTTCCCTTCTCCGACCACCTCCAACCGCGCCGGCCGACGTTCCAGGACCACCAACAGT 315
                      ** ******************************************************** 

consensus_6275#0      TCCTCCGACCGCAGCAGCAGTACACCGGCGCACCGTTCGGTTACGGCAACCTGCAGCAAG 537
consensus_6275#1      TCCTCCGACCGCAGCAGCAGTACACCGGCGCACCGTTCGGTTACGGCAACCTGCAGCAAG 375
                      ************************************************************

consensus_6275#0      CCGGCGGCGCCGGCACCGGCGCCGGCGACATGTTCAGCCACGCGCTGAGCTCGGCCGAGG 597
consensus_6275#1      CCGGCGGCGCCGGCACCGGCGCCGGCGACATGTTCAGCCACGCGCTGAGCTCGGCCGAGG 435
                      ************************************************************

consensus_6275#0      ACAGGTTGCTCCTGCAGAGCCTCCAGTCAGCTCAGATGCCTACTTCCGCCGCTAACCACA 657
consensus_6275#1      ACAGGTTGCTCCTGCAGAGCCTCCAGTCAGCTCAGATGCCTACTTCCGCCGCTAACCACA 495
                      ************************************************************

consensus_6275#0      GCGCTAATGGTTACTTCGCCTAATTAACCAACGGTTAATCGAAGACACATCACAAGCAAA 717
consensus_6275#1      GCGTTAATGGTTACTTCGCCTAATTAACCAACGGTTAATCGAAGACACATCACAAGCAAA 555
                      *** ********************************************************

consensus_6275#0      GAAGATACATGGACCAGTTGTGTTTAACCCCCTACAAGTTAATTTTACCCTCTCCTC 774
consensus_6275#1      GAAGATTCATGGACCAGTTGTGTTTAACCCCCTCCAAAAAAAAAAAAAAAAA----- 607
                      ****** ************************** ***   **    *