These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 774 fasta sequence [TGCAATTCGCGACGCGATCCGTCTCTCGCTCGATCGCCATGGCGGCCATGAGTGACACTGGCTCGAGCTTGGCGCAGTGGGCCGAGCTGTACCACGACGCGTCGGCTGCTCACGGCGGCGTGGTGGCGAACGGTGCGGCGGCGGCGGCGACGAGCCCGGCGTCGCCGGCGGGATCGACAGGCGGGAGCCCGACGCGGG-CGCCGGGGGTGGAGGGGCCGCGCGTGGGGAAGCCGGCGAGGAGGCGGTCCAGGGCGTCGCGGCGC-GCGCCCGTGACGCTGCTCAACACGGACACCACCAACTTCCGCGCCATGGTGCAGCAGATCACCGGCATCCCGGCGCCGCCCGCGGGCGCGTTCGCGGGGCCCGGCGGCGTTCCGGTCATCAACTTCGGCTCCGACTACGGCTTCACCGGCGCCGTCATTCCCTTCTCCGACCACCTCCAACCGCGCCGGCCGACGTTCCAGGACCACCAACAGCTCCTCCGACCGCAGCAGCAGTACACCGGCGCACCGTTCGGTTACGGCAACCTGCAGCAAGCCGGCGGCGCCGGCACCGGCGCCGGCGACATGTTCAGCCACGCGCTGAGCTCGGCCGAGGACAGGTTGCTCCTGCAGAGCCTCCAGTCAGCTCAGATGCCTACTTCCGCCGCTAACCACAGCGCTAATGGTTACTTCGCCTAATTAACCAACGGTTAATCGAAGACACATCACAAGCAAAGAAGATACATGGACCAGTTGTGTTTAACCCCCTACAAGTTAATTTTACCCTCTCCTC] [+] EMBL AK108002 [TGCAATTCGCGACGCGATCCGTCTCTCGCTCGATCGCCATGGCGGCCATGAGTGACACTGGCTCGAGCTTGGCGCAGTGGGCCGAGCTGTACCACGACGCGTCGGCTGCTCACGGCGGCGTGGTGGCGAACGGTGCGGCGGCGGCGGCGACGAGCCCGGCGTCGCCGGCGGGATCGACAGGCGGGAGCCCGACGCGGG CGCCGGGGGTGGAGGGGCCGCGCGTGGGGAAGCCGGCGAGGAGGCGGTCCAGGGCGTCGCGGCGC GCGCCCGTGACGCTGCTCAACACGGACACCACCAACTTCCGCGCCATGGTGCAGCAGATCACCGGCATCCCGGCGCCGCCCGCGGGCGCGTTCGCGGGGCCCGGCGGCGTTCCGGTCATCAACTTCGGCTCCGACTACGGCTTCACCGGCGCCGTCATTCCCTTCTCCGACCACCTCCAACCGCGCCGGCCGACGTTCCAGGACCACCAACAGCTCCTCCGACCGCAGCAGCAGTACACCGGCGCACCGTTCGGTTACGGCAACCTGCAGCAAGCCGGCGGCGCCGGCACCGGCGCCGGCGACATGTTCAGCCACGCGCTGAGCTCGGCCGAGGACAGGTTGCTCCTGCAGAGCCTCCAGTCAGCTCAGATGCCTACTTCCGCCGCTAACCACAGCGCTAATGGTTACTTCGCCTAATTAACCAACGGTTAATCGAAGACACATCACAAGCAAAGAAGATACATGGACCAGTTGTGTTTAACCCCCTACAAGTTAATTTTACCCTCTCCTC] [+] EMBL CF196748 [ GTCTCTCGCTCGATCGCCATGGCGGCCATGAGTGACACTGGCTCGAGCTTGGCGCAGTGGGCCGAGCTGTACCACGACGCGTCGGCTGCTCACGGCGGCGTGGTGGCGAACGGTGCGGCGGCCGCGGnnnn ] [+] EMBL CB664722 [ ggGGCAGGATCCAAAGGCGGTAGACGGACCCGGGACCCCGGGGG GGAGGGGCCTCCCGGGGGGAAGCCGGCGAGGAGGCGGTCCAGGGCGTCGCGGCGCATCGCCCGTGACGCTGCTCAACACGGACACCAGCAACTTCCGCGCCATGGTGCAGCAGGTCACCGGCATCCCGGCGCCGCCCGCGGGCGCGTTCGCGGGGCCCGGCGGCGTTCCGGTCATCAACTTCGGCTCCGACTACGGGTTCACCGGCGCCGTCCTTCCCTTCTCCGACCAACTCCAACCGCGCCGGTCGACGTTCCAGGACCACCAACAGCTCCTCCGACCGCAGCAGCAGTACACCGGCGCACCGTTCGGTTACGGCAACCTGCAGCAAGCCGGCGGCGCCGGCACCGGCGCCGGTGACATGTTCAGCCACGCTCTGATCTCGTTCGAGGACAG ] consensusID : consensus_6275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [CGCGGAAATTCCCCGACGGGATTTCCACGGCGACTTGAGGGGTATAGGGCACCGAAGAGGCAAGTCCCGCCAGGAGCCGGTCCAGGGATTCCGGGGGCGACTGCCGTGACGTTTATCAACACGGACTCCACCATTATCCGGTCCATGGTGCAGCAGTTCTCCGATCATCCCGTCTCCGCCCGCGGGGCGCGTTCGCGGGGCCCGGCGGCGTTCCGGTCATCAACTTCGGCTCCGACTACGGCTTCACCGGCGCCGTCCTTCCCTTCTCCGACCACCTCCAACCGCGCCGGCCGACGTTCCAGGACCACCAACAGTTCCTCCGACCGCAGCAGCAGTACACCGGCGCACCGTTCGGTTACGGCAACCTGCAGCAAGCCGGCGGCGCCGGCACCGGCGCCGGCGACATGTTCAGCCACGCGCTGAGCTCGGCCGAGGACAGGTTGCTCCTGCAGAGCCTCCAGTCAGCTCAGATGCCTACTTCCGCCGCTAACCACAGCGTTAATGGTTACTTCGCCTAATTAACCAACGGTTAATCGAAGACACATCACAAGCAAAGAAGATTCATGGACCAGTTGTGTTTAACCCCCTCCAAAAAAAAAAAAAAAAA] [-] EMBL CA754005 [CGCGGAAATTCCCCGACGGGATTTCCACGGCGACTTGAGGGGTATAGGGCACCGAAGAGGCAAGTCCCGCCAGGAGCCGGTCCAGGGATTCCGGGGGCGACTGCCGTGACGTTTATCAACACGGACTCCACCATTATCCGGTCCATGGTGCAGCAGTTCTCCGATCATCCCGTCTCCGCCCGCGGGGCGCGTTCGCGGGGCCCGGCGGCGTTCCGGTCATCAACTTCGGCTCCGACTACGGCTTCACCGGCGCCGTCCTTCCCTTCTCCGACCACCTCCAACCGCGCCGGCCGACGTTCCAGGACCACCAACAGTTCCTCCGACCGCAGCAGCAGTACACCGGCGCACCGTTCGGTTACGGCAACCTGCAGCAAGCCGGCGGCGCCGGCACCGGCGCCGGCGACATGTTCAGCCACGCGCTGAGCTCGGCCGAGGACAGGTTGCTCCTGCAGAGCCTCCAGTCAGCTCAGATGCCTACTTCCGCCGCTAACCACAGCGTTAATGGTTACTTCGCCTAATTAACCAACGGTTAATCGAAGACACATCACAAGCAAAGAAGATTCATGGACCAGTTGTGTTTAACCCCCTCCAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6275#0 TGCAATTCGCGACGCGATCCGTCTCTCGCTCGATCGCCATGGCGGCCATGAGTGACACTG 60 consensus_6275#1 ------------------------------------------------------------ consensus_6275#0 GCTCGAGCTTGGCGCAGTGGGCCGAGCTGTACCACGACGCGTCGGCTGCTCACGGCGGCG 120 consensus_6275#1 ------------------------------------------------------------ consensus_6275#0 TGGTGGCGAACGGTGCGGCGGCGGCGGCGACGAGCCCGGCGTCGCCGGCGGGATCGACAG 180 consensus_6275#1 ---------------------------------------------CGCGGAAATTCCCCG 15 ** * ** * * consensus_6275#0 GCGGGAGCCCGACGCGGGCGCCGGGGGTGGAGGGGCCGCGCGTGGGGAAGCCGGCGAGGA 240 consensus_6275#1 ACGGGATTTCCACGGCGACTTGAGGGGTATAGGGCACCGAAGAGGCAAGTCCCGCCAGGA 75 ***** * *** * * ***** **** * * ** * ** ** **** consensus_6275#0 GGCGGTCCAGGGCGTCGCGGCGCG-CGCCCGTGACGCTGCTCAACACGGACACCACCAAC 299 consensus_6275#1 GCCGGTCCAGGGATTCCGGGGGCGACTGCCGTGACGTTTATCAACACGGACTCCACCATT 135 * ********** ** ** *** * ******** * *********** ****** consensus_6275#0 TTCCGCGCCATGGTGCAGCAGATCACCGG-CATCCCGGCGCCGCCCGCGGG-CGCGTTCG 357 consensus_6275#1 ATCCGGTCCATGGTGCAGCAGTTCTCCGATCATCCCGTCTCCGCCCGCGGGGCGCGTTCG 195 **** ************** ** *** ******* * *********** ******** consensus_6275#0 CGGGGCCCGGCGGCGTTCCGGTCATCAACTTCGGCTCCGACTACGGCTTCACCGGCGCCG 417 consensus_6275#1 CGGGGCCCGGCGGCGTTCCGGTCATCAACTTCGGCTCCGACTACGGCTTCACCGGCGCCG 255 ************************************************************ consensus_6275#0 TCATTCCCTTCTCCGACCACCTCCAACCGCGCCGGCCGACGTTCCAGGACCACCAACAGC 477 consensus_6275#1 TCCTTCCCTTCTCCGACCACCTCCAACCGCGCCGGCCGACGTTCCAGGACCACCAACAGT 315 ** ******************************************************** consensus_6275#0 TCCTCCGACCGCAGCAGCAGTACACCGGCGCACCGTTCGGTTACGGCAACCTGCAGCAAG 537 consensus_6275#1 TCCTCCGACCGCAGCAGCAGTACACCGGCGCACCGTTCGGTTACGGCAACCTGCAGCAAG 375 ************************************************************ consensus_6275#0 CCGGCGGCGCCGGCACCGGCGCCGGCGACATGTTCAGCCACGCGCTGAGCTCGGCCGAGG 597 consensus_6275#1 CCGGCGGCGCCGGCACCGGCGCCGGCGACATGTTCAGCCACGCGCTGAGCTCGGCCGAGG 435 ************************************************************ consensus_6275#0 ACAGGTTGCTCCTGCAGAGCCTCCAGTCAGCTCAGATGCCTACTTCCGCCGCTAACCACA 657 consensus_6275#1 ACAGGTTGCTCCTGCAGAGCCTCCAGTCAGCTCAGATGCCTACTTCCGCCGCTAACCACA 495 ************************************************************ consensus_6275#0 GCGCTAATGGTTACTTCGCCTAATTAACCAACGGTTAATCGAAGACACATCACAAGCAAA 717 consensus_6275#1 GCGTTAATGGTTACTTCGCCTAATTAACCAACGGTTAATCGAAGACACATCACAAGCAAA 555 *** ******************************************************** consensus_6275#0 GAAGATACATGGACCAGTTGTGTTTAACCCCCTACAAGTTAATTTTACCCTCTCCTC 774 consensus_6275#1 GAAGATTCATGGACCAGTTGTGTTTAACCCCCTCCAAAAAAAAAAAAAAAAA----- 607 ****** ************************** *** ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||