These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6280#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1532 fasta sequence [TACGACCATGGCGTTCTTCCTCCCTCTCGCGTTCTCCCTCTTCCTCGCCGTCATCTCCGCCTACGTCCTCCAGCTCCTCGCCGACGCTCGCCGCCGGCTGCCGCCAGGCCCGTGGCCGCTGCCGCTGATCGGCAACCTCCACCAGCTCGACCACCTGCCGCACCGCTCCCTCGCGCGCCTCGCCGCGCGCCACGGGCCGCTCATGTCGCTCCGCCTCGGCACCGTGCGCGCCGTCGTCGCGTCGTCGCCGGAGATGGCGCGGGAGGTCCTGCAGCGGCACAACGCCGACATCGCCGCCAGGTCCTTCGGCGACTCCATGCGCGCCGGCGGCCACTGCGAGAACTCCGTGGTTTGCCTGCCCCCGCGCCGCAGGTGGCGCGCCCTGCGGCGGCTCAGCACCGTCGGGCTCTTCTCGCCGCGCCGGCTCGACGCCATGAGGGCTCTCCTGGAGGAGAAGGTGGCCGAGCTTGTCCGCCGCGTGTCCGGCCACGCCGCGCGCGGCGAGGCCGTGGACGTGGGCCACGCCGCGCACGTCGCCGCGCTGGGCGTCCTGTCGCGCACCATGTTCTCCGTCGACCTCGACCCCGAGGCGGCGCGCGAGGTGAGCGACATCGTGGACGAGGCGTCGGTGCTGGGCACCGGGCCGAACGTCTCCGACTTCTTCCCGGCGATCGCGCCGGCCGACCTCCAGGGAGTTCGCCGGAGGATGGCGAGGCTGGTGAAGAGGATGTACGCCATCATTGACGAGCAGATCGAGCGGAGGATGCATGGCCGCACCGCCGGCGAGCCACGCAAGAACGACCTGCTCGACGTGATGCTGGAGGAGGGGGAGAGTAAAGAAGATAGCAACGAAATTAACCGTGATGCCATCCGTGGACTTTTTACAGATTTGTTCACTGGTGGAGAGACGACTTCTCACACAATGGAGTGTGCAATGGCAGAACTATTGCAGTGTCCAAACTCGATGAGAAGGGTGCACGAACTCAAGAGTGTGATAGGCAGCAAACAACAAATGGATGAACATGATATTACCAAACTGCCCTACCACCATACGAGGCCGAAGCCACGATAGAAATACAAGGTTACACCATTCCTAAGGGAGCGAAAGTGCTTATAAACTTGTGGGCGATCAATCGATGCGCCAACACATGGACCGAGCCAGATAAGTTCATGCCAGAGAGGTTCTACGATAGTGACATTACTTTCATGGGGAGGGATTTTCAACTAATTCCTTTTGGAGCTGGAAAGCGCATTTGCCTTGGATTGCCACTAGCTCACAGAATGGTCCATTTGATGCTTGGCTCGTTGCTACACCGATTCACATGGACATTGCCAGCTGAGGCTGGGAAAAATGGAGTGGATATGAGGG----AGAGGTTTGGGTTAACA-CTATCATTT-GTTGCTCCCCTCTATGTAATAGCTCAAGAAATACAATAAGAAACATGTGACTTTTTTATGATGAAGAATAGAAGAACATTACAAATGTAATGCGATGATAGCTGCTCTAAATATGTAATCACCCAAGATATTTTCTG] [+] EMBL AK058441 [TACGACCATGGCGTTCTTCCTCCCTCTCGCGTTCTCCCTCTTCCTCGCCGTCATCTCCGCCTACGTCCTCCAGCTCCTCGCCGACGCTCGCCGCCGGCTGCCGCCAGGCCCGTGGCCGCTGCCGCTGATCGGCAACCTCCACCAGCTCGACCACCTGCCGCACCGCTCCCTCGCGCGCCTCGCCGCGCGCCACGGGCCGCTCATGTCGCTCCGCCTCGGCACCGTGCGCGCCGTCGTCGCGTCGTCGCCGGAGATGGCGCGGGAGGTCCTGCAGCGGCACAACGCCGACATCGCCGCCAGGTCCTTCGGCGACTCCATGCGCGCCGGCGGCCACTGCGAGAACTCCGTGGTTTGCCTGCCCCCGCGCCGCAGGTGGCGCGCCCTGCGGCGGCTCAGCACCGTCGGGCTCTTCTCGCCGCGCCGGCTCGACGCCATGAGGGCTCTCCTGGAGGAGAAGGTGGCCGAGCTTGTCCGCCGCGTGTCCGGCCACGCCGCGCGCGGCGAGGCCGTGGACGTGGGCCACGCCGCGCACGTCGCCGCGCTGGGCGTCCTGTCGCGCACCATGTTCTCCGTCGACCTCGACCCCGAGGCGGCGCGCGAGGTGAGCGACATCGTGGACGAGGCGTCGGTGCTGGGCACCGGGCCGAACGTCTCCGACTTCTTCCCGGCGATCGCGCCGGCCGACCTCCAGGGAGTTCGCCGGAGGATGGCGAGGCTGGTGAAGAGGATGTACGCCATCATTGACGAGCAGATCGAGCGGAGGATGCATGGCCGCACCGCCGGCGAGCCACGCAAGAACGACCTGCTCGACGTGATGCTGGAGGAGGGGGAGAGTAAAGAAGATAGCAACGAAATTAACCGTGATGCCATCCGTGGACTTTTTACAGATTTGTTCACTGGTGGAGAGACGACTTCTCACACAATGGAGTGTGCAATGGCAGAACTATTGCAGTGTCCAAACTCGATGAGAAGGGTGCACGAACTCAAGAGTGTGATAGGCAGCAAACAACAAATGGATGAACATGATATTACCAAACTGCCCTACCACCATACGAGGCCGAAGCCACGATAGAAATACAAGGTTACACCATTCCTAAGGGAGCGAAAGTGCTTATAAACTTGTGGGCGATCAATCGATGCGCCAACACATGGACCGAGCCAGATAAGTTCATGCCAGAGAGGTTCTACGATAGTGACATTACTTTCATGGGGAGGGATTTTCAACTAATTCCTTTTGGAGCTGGAAAGCGCATTTGCCTTGGATTGCCACTAGCTCACAGAATGGTCCATTTGATGCTTGGCTCGTTGCTACACCGATTCACATGGACATTGCCAGCTGAGGCTGGGAAAAATGGAGTGGATATGAGGG AGAGGTTTGGGTTAACA CTATCATTT GTTGCTCCCCTCTATGTAATAGCTCAAGAAATACAATAAGAAACATGTGACTTTTTTATGATGAAGAATAGAAGAACATTACAAATGTAATGCGATGATAGCTGCTCTAAATATGTAATCACCCAAGAT ] [+] EMBL CA753792 [ GCCACGCAAGAACGACCTGCTCGACGTGATGCTGGAGGAGGGGGAGAGTAAAGAAGATAGCAACGAAATTAACCGTGATGCCATCCGTGGACTTTTTACAGATTTGTTCACTGGTGGAGAGACGACTTCTCACACAATGGAGTGTGCAATGGCAGAACTATTGCAGTGTCCAAACTCGATGAGAAGGGTGCACGAACTCAAGAGTGTGATAGGCAGCAAACAACAAATGGATGAACATGATATTACCAAACTGCCCTACCACCATACGAGGCCGAAGCCACGATAGAAATACAAGGTTACACCATTCCTAAGGGAGCGAAAGTGCTTATAAACTTGTGGGCGATCAATCGATGCGCCAACACATGGACCGAGCCAGATNAGTTCATGCCAGAGAGGTTCTACGATAGTGACATTACTTTCATGGGGAGGGATTTTCAACTAATTCCTTTTGGAGCTGGAAAGCGCATTTGCCTTGGATTGCCACTAGCTCACAGAATGGTCCATTTGATGCTTGGCTCGTTGCTACACCGATTCACATGGACATTGCCAGCTGAGGCTGGGAAAAATGGAGT GAT TGANGGNAAAAGGGGNTTGGGNTTACACCTATCATTTGGTTG ] [+] EMBL CA999619 [ TAATTCCTTTTGGAGCTGGAAAGCGCATTTGCCTTGGATTGCCACTAGCTCACAGAATGGTCCATTTGATGCTTGGCTCGTTGCTACACCGATTCACATGGACATTGCCAGCTGAGGCTGGGAAAAATGGAGTGGATATGAGGG AGAGGTTTGGGTTAACA CTATCATTT GTTGCTCCCCTCTATGTAATAGCTCAAGAAATACAATAAGAAACATGTGACTTTTTTATGATGAAGAATAGAAGAACATTACAAATGTAATGCGATGATAGCTGCTCTAAATATGTAATCACCCAAGATATTTTCTG] consensusID : consensus_6280#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 935 fasta sequence [TGCTACGACCATGGCGTTCTTCCTCCCTCTCGCGTTCTCCCTCTTCCTCGCCGTCATCTCCGCCTACGTCCTCCAGCTCCTCGCCGACGCTCGCCGCCGGCTGCCGCCAGGCCCGTGGCCGCTGCCGCTGATCGGCAACCTCCACCAGCTCGACCACCTGCCGCACCGCTCCCTCGCGCGCCTCGCCGCGCGCCACGGGCCGCTCATGTCGCTCCGCCTCGGCACCGTGCGCGCCGTCGTCGCGTCGTCGCCGGAGATGGCGCGGGAGGTCCTGCAGCGGCACAACGCCGACATCGCCGCCAGGTCCTTCGGCGACTCCATGCGCGCCGGCGGCCACTGCGAGAACTCCGTGGTTTGCCTGCCCCCGCGCCGCAGGTGGCGCGCCCTGCGGCGGCTCAGCACCGTCGGGCTCTTCTCGCCGCGCCGGCTCGACGCCATGAGGGCTCTCCTGGAGGAGAAGGTGGCCGAGCTTGTCCGCCGCGTGTCCGGCCACGCCGCGCGCGGCGAGGCCGTGGACGTGGGCCACGCCGCGCACGTCGCCGCGCTGGGCGTCCTGTCGCGCACCATGTTCTCCGTCGACCTCGACCCCGAGGCGGCGCGCGAGGTGAGCGACATCGTGGACGAGGCGTCGGTGCTGGGCACCGGGCCGAACGTCTCCGACTTCTTCCCGGCGATCGCGCCGGCCGACCTCCAGGGAGTTCGCCGGAGGATGGCGAGGCTGGTGAAGAGGATGTACGCCATCATTGACGAGCAGATCGAGCGGAGGATGCATGGCCGCACCGCCGGCGAGCCACGCAAGAACGACCTGCTCGACGTGATGCTGGAGGAGGGGGAGAGTAAAGAAGATAGCAACGAAATTAACCGTGATGCCATCCGTGGACTTTTTACAGTGAGTACTTGTACAACTTGCGGACGGATATTAATTTGTGAATAAA] [+] EMBL AK073585 [TGCTACGACCATGGCGTTCTTCCTCCCTCTCGCGTTCTCCCTCTTCCTCGCCGTCATCTCCGCCTACGTCCTCCAGCTCCTCGCCGACGCTCGCCGCCGGCTGCCGCCAGGCCCGTGGCCGCTGCCGCTGATCGGCAACCTCCACCAGCTCGACCACCTGCCGCACCGCTCCCTCGCGCGCCTCGCCGCGCGCCACGGGCCGCTCATGTCGCTCCGCCTCGGCACCGTGCGCGCCGTCGTCGCGTCGTCGCCGGAGATGGCGCGGGAGGTCCTGCAGCGGCACAACGCCGACATCGCCGCCAGGTCCTTCGGCGACTCCATGCGCGCCGGCGGCCACTGCGAGAACTCCGTGGTTTGCCTGCCCCCGCGCCGCAGGTGGCGCGCCCTGCGGCGGCTCAGCACCGTCGGGCTCTTCTCGCCGCGCCGGCTCGACGCCATGAGGGCTCTCCTGGAGGAGAAGGTGGCCGAGCTTGTCCGCCGCGTGTCCGGCCACGCCGCGCGCGGCGAGGCCGTGGACGTGGGCCACGCCGCGCACGTCGCCGCGCTGGGCGTCCTGTCGCGCACCATGTTCTCCGTCGACCTCGACCCCGAGGCGGCGCGCGAGGTGAGCGACATCGTGGACGAGGCGTCGGTGCTGGGCACCGGGCCGAACGTCTCCGACTTCTTCCCGGCGATCGCGCCGGCCGACCTCCAGGGAGTTCGCCGGAGGATGGCGAGGCTGGTGAAGAGGATGTACGCCATCATTGACGAGCAGATCGAGCGGAGGATGCATGGCCGCACCGCCGGCGAGCCACGCAAGAACGACCTGCTCGACGTGATGCTGGAGGAGGGGGAGAGTAAAGAAGATAGCAACGAAATTAACCGTGATGCCATCCGTGGACTTTTTACAGTGAGTACTTGTACAACTTGCGGACGGATATTAATTTGTGAATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6280#0 ---TACGACCATGGCGTTCTTCCTCCCTCTCGCGTTCTCCCTCTTCCTCGCCGTCATCTC 57 consensus_6280#1 TGCTACGACCATGGCGTTCTTCCTCCCTCTCGCGTTCTCCCTCTTCCTCGCCGTCATCTC 60 ********************************************************* consensus_6280#0 CGCCTACGTCCTCCAGCTCCTCGCCGACGCTCGCCGCCGGCTGCCGCCAGGCCCGTGGCC 117 consensus_6280#1 CGCCTACGTCCTCCAGCTCCTCGCCGACGCTCGCCGCCGGCTGCCGCCAGGCCCGTGGCC 120 ************************************************************ consensus_6280#0 GCTGCCGCTGATCGGCAACCTCCACCAGCTCGACCACCTGCCGCACCGCTCCCTCGCGCG 177 consensus_6280#1 GCTGCCGCTGATCGGCAACCTCCACCAGCTCGACCACCTGCCGCACCGCTCCCTCGCGCG 180 ************************************************************ consensus_6280#0 CCTCGCCGCGCGCCACGGGCCGCTCATGTCGCTCCGCCTCGGCACCGTGCGCGCCGTCGT 237 consensus_6280#1 CCTCGCCGCGCGCCACGGGCCGCTCATGTCGCTCCGCCTCGGCACCGTGCGCGCCGTCGT 240 ************************************************************ consensus_6280#0 CGCGTCGTCGCCGGAGATGGCGCGGGAGGTCCTGCAGCGGCACAACGCCGACATCGCCGC 297 consensus_6280#1 CGCGTCGTCGCCGGAGATGGCGCGGGAGGTCCTGCAGCGGCACAACGCCGACATCGCCGC 300 ************************************************************ consensus_6280#0 CAGGTCCTTCGGCGACTCCATGCGCGCCGGCGGCCACTGCGAGAACTCCGTGGTTTGCCT 357 consensus_6280#1 CAGGTCCTTCGGCGACTCCATGCGCGCCGGCGGCCACTGCGAGAACTCCGTGGTTTGCCT 360 ************************************************************ consensus_6280#0 GCCCCCGCGCCGCAGGTGGCGCGCCCTGCGGCGGCTCAGCACCGTCGGGCTCTTCTCGCC 417 consensus_6280#1 GCCCCCGCGCCGCAGGTGGCGCGCCCTGCGGCGGCTCAGCACCGTCGGGCTCTTCTCGCC 420 ************************************************************ consensus_6280#0 GCGCCGGCTCGACGCCATGAGGGCTCTCCTGGAGGAGAAGGTGGCCGAGCTTGTCCGCCG 477 consensus_6280#1 GCGCCGGCTCGACGCCATGAGGGCTCTCCTGGAGGAGAAGGTGGCCGAGCTTGTCCGCCG 480 ************************************************************ consensus_6280#0 CGTGTCCGGCCACGCCGCGCGCGGCGAGGCCGTGGACGTGGGCCACGCCGCGCACGTCGC 537 consensus_6280#1 CGTGTCCGGCCACGCCGCGCGCGGCGAGGCCGTGGACGTGGGCCACGCCGCGCACGTCGC 540 ************************************************************ consensus_6280#0 CGCGCTGGGCGTCCTGTCGCGCACCATGTTCTCCGTCGACCTCGACCCCGAGGCGGCGCG 597 consensus_6280#1 CGCGCTGGGCGTCCTGTCGCGCACCATGTTCTCCGTCGACCTCGACCCCGAGGCGGCGCG 600 ************************************************************ consensus_6280#0 CGAGGTGAGCGACATCGTGGACGAGGCGTCGGTGCTGGGCACCGGGCCGAACGTCTCCGA 657 consensus_6280#1 CGAGGTGAGCGACATCGTGGACGAGGCGTCGGTGCTGGGCACCGGGCCGAACGTCTCCGA 660 ************************************************************ consensus_6280#0 CTTCTTCCCGGCGATCGCGCCGGCCGACCTCCAGGGAGTTCGCCGGAGGATGGCGAGGCT 717 consensus_6280#1 CTTCTTCCCGGCGATCGCGCCGGCCGACCTCCAGGGAGTTCGCCGGAGGATGGCGAGGCT 720 ************************************************************ consensus_6280#0 GGTGAAGAGGATGTACGCCATCATTGACGAGCAGATCGAGCGGAGGATGCATGGCCGCAC 777 consensus_6280#1 GGTGAAGAGGATGTACGCCATCATTGACGAGCAGATCGAGCGGAGGATGCATGGCCGCAC 780 ************************************************************ consensus_6280#0 CGCCGGCGAGCCACGCAAGAACGACCTGCTCGACGTGATGCTGGAGGAGGGGGAGAGTAA 837 consensus_6280#1 CGCCGGCGAGCCACGCAAGAACGACCTGCTCGACGTGATGCTGGAGGAGGGGGAGAGTAA 840 ************************************************************ consensus_6280#0 AGAAGATAGCAACGAAATTAACCGTGATGCCATCCGTGGACTTTTTACAG-----ATTTG 892 consensus_6280#1 AGAAGATAGCAACGAAATTAACCGTGATGCCATCCGTGGACTTTTTACAGTGAGTACTTG 900 ************************************************** * *** consensus_6280#0 TTCA-CTGGTGGAGAGACGACTTCTCACACAATGGAGTGTGCAATGGCAGAACTATTGCA 951 consensus_6280#1 TACAACTTGCGGACGGATATTAATTTGTG-AATAAA------------------------ 935 * ** ** * *** ** * *** * consensus_6280#0 GTGTCCAAACTCGATGAGAAGGGTGCACGAACTCAAGAGTGTGATAGGCAGCAAACAACA 1011 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 AATGGATGAACATGATATTACCAAACTGCCCTACCACCATACGAGGCCGAAGCCACGATA 1071 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 GAAATACAAGGTTACACCATTCCTAAGGGAGCGAAAGTGCTTATAAACTTGTGGGCGATC 1131 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 AATCGATGCGCCAACACATGGACCGAGCCAGATAAGTTCATGCCAGAGAGGTTCTACGAT 1191 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 AGTGACATTACTTTCATGGGGAGGGATTTTCAACTAATTCCTTTTGGAGCTGGAAAGCGC 1251 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 ATTTGCCTTGGATTGCCACTAGCTCACAGAATGGTCCATTTGATGCTTGGCTCGTTGCTA 1311 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 CACCGATTCACATGGACATTGCCAGCTGAGGCTGGGAAAAATGGAGTGGATATGAGGGAG 1371 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 AGGTTTGGGTTAACACTATCATTTGTTGCTCCCCTCTATGTAATAGCTCAAGAAATACAA 1431 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 TAAGAAACATGTGACTTTTTTATGATGAAGAATAGAAGAACATTACAAATGTAATGCGAT 1491 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 GATAGCTGCTCTAAATATGTAATCACCCAAGATATTTTCTG 1532 consensus_6280#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||