These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6281#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 436 fasta sequence [TCAGGAGGAAAAGGGCACTTTACAGACTCAGTTTGCAGATATAGAGAAGAGCAACGAAGACACAAACCAAGCCCCGCAGCCTCGAGAACCAGCACAGGAGTTTGATACCGATGCTCATATGGAAAAACAAACTGCAATGGAAGCATGAATTGGTGCTCCATACAGACGGTTGGTTCCATTCAATGTATTGCACGAAAATGCTCCGTAACTATATGAAGTTGAGTTTTGGAAAATACATGTGCCAAACTCGAATGCATACTTGCAAGTTTCCTACTGCATGTTTGTATATCAGTACCAGCAAACTGAAGTACTGTTGTACAAACAAAAACATATATTTGCCGTAGTGAGAATTGCTTGAGTTGTAACAATTCCATGTACTCTCTATTATTAAAAGAGCTCTGCATAGCCAAGTTGTACACACGCAAAAAAAAAAAAA] [+] EMBL AU223140 [TCAGGAGGAAAAGGGCACTTTACAGACTCAGTTTGCAGATATAGAGAAGAGCAACGAAGACACAAACCAAGCCCCGCAGCCTCGAGAACCAGCACAGGAGTTTGATACCGATGCTCATATGGAAAAACAAACTGCAATGGAAGCATGAATTGGTGCTCCATACAGACGGTTGGTTCCATTCAATGTATTGCACGAAAATGCTCCGTAACTATATGAAGTTGAGTTTTGGAAAATACATGTGCCAAACTCGAATGCATACTTGCAAGTTTCCTACTGCATGTTTGTATATCAGTACCAGCAAACTGAAGTACTGTTGTACAAACAAAAACATATATTTGCCGTAGTGAGAATTGCTTGAGTTGTAACAATTCCATGTACTCTCTATTATTAAAAGAGCTCTGCATAGCCAAGTTGTACACACGCAAAAAAAAAAAAA] [+] EMBL AU174284 [ AGGAGGAAAAGGGCCCTTTNCAGACTCAGTTTGCAGATATAGAGAAGAGCAACGAAGACCCAAACCAAGCCCCGCAGCCTCGAGAACCAGCNCAGGAGTTTGATACCGATGCTCATATGGAAAAACNAACTGCAATGGAAGCATGAATTGGTGCTCCATACAGACGGTTGGTTCCATTCAATGTATTGCACGAAAATGCTCCGTAACTATATGAAGTTGAGTTTTGGAAAATACATGTGCCAAACTCGAATGCATACTTGCAAGTTTCCTACTGCATGTTTGTATATCAGTACCAGCAAACTGAAGTACTGTTGTACAAACAAAAACATATATTTGCCGTAGTGAGAATTGCTTGAGTTGTAACAATTCCATGTACTCTCTATTATTAAAAGAGCTCTGCATAGCCAAGTTGTACACACGCAAAAAAAAAAAAA] [+] EMBL AU086044 [ ATATGGAAAAACAAACTGCAATGGAAGCATGAATTGGTGCTCCATACAGACGGTTGGTTCCATTCAATGTATTGCNCGAAANTGCTCCGTAACTATATGAAGTTGAGTTTTGGAAAATACATGTGCCAAACTCGAATGCATACTTGCAAGTTTCCTACTGCATGTTTGTATATCAGTACCAGCAAACTGAAGTACTGTTGTACAAACNAAAACATATATTTGCCGTAGTGAGAATTGCTTGAGTTGTAACAATTCCATGTACTCTCTATTATTAAAAGAGCTCTGCATAGCCAAGTTGTACACACGCAAAAAAAAAAAAA] consensusID : consensus_6281#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [AACTGCAANGGGAGCCNGGATTGGTGNTNCAAACAGGNGGTTGGTTCCATTTCAATGTATTGCNCGNNAANGNTCCGTAANTATATGNAGTTGNGTTTTGGAAAANANATGNGCCAAACTTGAATGCANACTTGCAATTTCCTACNGGCATGTTTGTATATCAGTACCAGCAAAANTGAAGTANTGTTGTACAAACGAAAACATATATTNCCCCGTANCNAGAATTGCTTGAGTTGTAACAATTCCANGNACTCTCTATTATTAAAAGAGTTNTGCATAGCCAAGTTG] [-] EMBL BE228406 [AACTGCAANGGGAGCCNGGATTGGTGNTNCAAACAGGNGGTTGGTTCCATTTCAATGTATTGCNCGNNAANGNTCCGTAANTATATGNAGTTGNGTTTTGGAAAANANATGNGCCAAACTTGAATGCANACTTGCAATTTCCTACNGGCATGTTTGTATATCAGTACCAGCAAAANTGAAGTANTGTTGTACAAACGAAAACATATATTNCCCCGTANCNAGAATTGCTTGAGTTGTAACAATTCCANGNACTCTCTATTATTAAAAGAGTTNTGCATAGCCAAGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6281#0 TCAGGAGGAAAAGGGCACTTTACAGACTCAGTTTGCAGATATAGAGAAGAGCAACGAAGA 60 consensus_6281#1 ------------------------------------------------------------ consensus_6281#0 CACAAACCAAGCCCCGCAGCCTCGAGAACCAGCACAGGAGTTTGATACCGATGCTCATAT 120 consensus_6281#1 ------------------------------------------------------------ consensus_6281#0 GGAAAAACAAACTGCAATGGAAGCATGAATTGGTGCTCCATACAGACGGTTGGTTCCATT 180 consensus_6281#1 ---------AACTGCAANGGGAGCCNGGATTGGTGNTNCAAACAGGNGGTTGGTTCCATT 51 ******** ** *** * ******* * ** **** ************* consensus_6281#0 -CAATGTATTGCACGAAAATGCTCCGTAACTATATGAAGTTGAGTTTTGGAAAATACATG 239 consensus_6281#1 TCAATGTATTGCNCGNNAANGNTCCGTAANTATATGNAGTTGNGTTTTGGAAAANANATG 111 *********** ** ** * ******* ****** ***** *********** * *** consensus_6281#0 TGCCAAACTCGAATGCATACTTGCAAGTTTCCTACTG-CATGTTTGTATATCAGTACCAG 298 consensus_6281#1 NGCCAAACTTGAATGCANACTTGCAA-TTTCCTACNGGCATGTTTGTATATCAGTACCAG 170 ******** ******* ******** ******** * ********************** consensus_6281#0 CAAA-CTGAAGTACTGTTGTACAAACAAAAACATATATTTGCC-GTAGTGAGAATTGCTT 356 consensus_6281#1 CAAAANTGAAGTANTGTTGTACAAACGAAAACATATATTNCCCCGTANCNAGAATTGCTT 230 **** ******* ************ ************ ** *** ********** consensus_6281#0 GAGTTGTAACAATTCCATGTACTCTCTATTATTAAAAGAGCTCTGCATAGCCAAGTTGTA 416 consensus_6281#1 GAGTTGTAACAATTCCANGNACTCTCTATTATTAAAAGAGTTNTGCATAGCCAAGTTG-- 288 ***************** * ******************** * *************** consensus_6281#0 CACACGCAAAAAAAAAAAAA 436 consensus_6281#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||