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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6283#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1841 fasta sequence
[CTTCCCGCGAGGGTTTAGGCGCGGCGGAGCCAAACCTCGCCGCCGGCGACCATGGTGTCGCAGCACGGGATCCTCCTCGCCGTCGCCATCATCTCCGACCACTTCGGCCCCCTCGTATCCAAGGTGTGCCGCTGCCTGCTCCGCCACGGCGCGCTGCCGCTGCAGGAGATCGTCCGCCGCCTCGAGCTCTCGCCGGGGCAGGTGAAGAACTCGCTCCTCGTCCTCATCCAGCACAACTGCGTGCAGGCCTTCAATGCCCCCAGAGGAAATGGTGATAAGACGGTAACGCACTACCTGGCCATCTTCGACAACATCGTGCACAGACAGCGTTTCTCAAAGTTCCTTTCTATCATCCGTGCAGACATCCCAGAGTCAGAAGCGCTGCTTGAAGGATTGCTTCAGAATGGTAGGCTAACATTTGGCCAACTTGTGGAGCGAACAATTTCTAAAGTACCAGAAGGCAGTATCACACCAGCAAGGGAGGAAATACGAATGAACTTCAACAAACTTGTATTTGCACATTATGT-GGAGCGTTGCCCGAAACCTGAACCTTTCTTTGATCCACTTGTAGATGAACAATCTACCTCGTCAAGGAAACGTGCTCCAAAAACTGTCGAGATTGCTCTTTCAATTGATAAGAAAGTTGTCAATACTGCAGCTCTTTCTGATGCAGAAAGATTTTCTGAGATCCCATACATCATGGAAGATGCATCCAATGCTAATGATTCTCCACGTTCTTCTATTTCTGGTGCTAAGAGGAAACATAATGCCTTAGAAGGAGATGCAGAGCTCGATTCAACAATTGCAGAGAACGAAGTACTTTGGCGGGCAAATTTTGAGAAATTCACATTCTGTCTAAAGAAGAAGTTTTGTGCAGACCGAAAGAAACCTAAGTTGAAGGTTGGCACACATCCTATCTGGGAAGCATTTTTCGAGGCCAGTTTAATGGAAAGGGACAACAACTCTGTGACATCTCCAATAAATGGTATTATGGAGAGGCTAGGACAGAAGGAAGGAGGTACATCGATGACACTTGATCATATAACAAGAGTTTTGGAGGAGTTGAATTGTAGTCCTTCCTCAGAGGACCCAGATTCATTCATTTTGGATTTAAGCAGAATTGTTGAAGCATCTCGAAATGAGGAGATAGAGTCGCTTGTGAGAAAGAAATACGGGCAAGAAGCTTTTACAATTTTTAGGCTATTGGTCAGAGAACGCGGTCCAGTTGAGACAGATAAAATTATTGACACAACAATTCTTGACAAGCAGATTGTTCATGGAACTTTGTATAAGCTTTGGAAGGACGACTACATCGATACAGAGAGAATCCTTTCTGGAACAGGAACAGGGAACACACAATATTTTGTATGGAGAGTGAAAAATACATTCCGGGAACAGTTCATCGATAATCTATGTCATGCTGCTTTAAACCTGCGGCAAATGGTCAATTACATAGCTGAACTCCTACTCGAGGGCTCAAAGGATGACACAAAGTTGCGGAATAGAAAAAATATTTTGATCTTAGCCCTGACTAGACATGACGATTCTCTCATGCTGTTTCAGGATTTTTGAAACGCTGTAGCAGGTGTTCCAGCATCTTTCTTCCATACTTAATCATACTTCTTTTGAGCTAGATGGTGGAATATCATAGTTTATTTTGCACCCAGGCTTTTATTGGGTCAACTGGCTTAGGATTAACCAACGCTTTCCCTAGGCCAATCGAACCAACCTTTCCTTTTGGCATTTCGTTTCAAACCAAAGTTCGGAAATGAAATCCTTTGGTATATTGGACCCTTGTGAATTTTTGTCTTTTTGTGACTAATTAAATTTTGGTAACGTCA]
[+] EMBL AK058515 [CTTCCCGCGAGGGTTTAGGCGCGGCGGAGCCAAACCTCGCCGCCGGCGACCATGGTGTCGCAGCACGGGATCCTCCTCGCCGTCGCCATCATCTCCGACCACTTCGGCCCCCTCGTATCCAAGGTGTGCCGCTGCCTGCTCCGCCACGGCGCGCTGCCGCTGCAGGAGATCGTCCGCCGCCTCGAGCTCTCGCCGGGGCAGGTGAAGAACTCGCTCCTCGTCCTCATCCAGCACAACTGCGTGCAGGCCTTCAATGCCCCCAGAGGAAATGGTGATAAGACGGTAACGCACTACCTGGCCATCTTCGACAACATCGTGCACAGACAGCGTTTCTCAAAGTTCCTTTCTATCATCCGTGCAGACATCCCAGAGTCAGAAGCGCTGCTTGAAGGATTGCTTCAGAATGGTAGGCTAACATTTGGCCAACTTGTGGAGCGAACAATTTCTAAAGTACCAGAAGGCAGTATCACACCAGCAAGGGAGGAAATACGAATGAACTTCAACAAACTTGTATTTGCACATTATGT GGAGCGTTGCCCGAAACCTGAACCTTTCTTTGATCCACTTGTAGATGAACAATCTACCTCGTCAAGGAAACGTGCTCCAAAAACTGTCGAGATTGCTCTTTCAATTGATAAGAAAGTTGTCAATACTGCAGCTCTTTCTGATGCAGAAAGATTTTCTGAGATCCCATACATCATGGAAGATGCATCCAATGCTAATGATTCTCCACGTTCTTCTATTTCTGGTGCTAAGAGGAAACATAATGCCTTAGAAGGAGATGCAGAGCTCGATTCAACAATTGCAGAGAACGAAGTACTTTGGCGGGCAAATTTTGAGAAATTCACATTCTGTCTAAAGAAGAAGTTTTGTGCAGACCGAAAGAAACCTAAGTTGAAGGTTGGCACACATCCTATCTGGGAAGCATTTTTCGAGGCCAGTTTAATGGAAAGGGACAACAACTCTGTGACATCTCCAATAAATGGTATTATGGAGAGGCTAGGACAGAAGGAAGGAGGTACATCGATGACACTTGATCATATAACAAGAGTTTTGGAGGAGTTGAATTGTAGTCCTTCCTCAGAGGACCCAGATTCATTCATTTTGGATTTAAGCAGAATTGTTGAAGCATCTCGAAATGAGGAGATAGAGTCGCTTGTGAGAAAGAAATACGGGCAAGAAGCTTTTACAATTTTTAGGCTATTGGTCAGAGAACGCGGTCCAGTTGAGACAGATAAAATTATTGACACAACAATTCTTGACAAGCAGATTGTTCATGGAACTTTGTATAAGCTTTGGAAGGACGACTACATCGATACAGAGAGAATCCTTTCTGGAACAGGAACAGGGAACACACAATATTTTGTATGGAGAGTGAAAAATACATTCCGGGAACAGTTCATCGATAATCTATGTCATGCTGCTTTAAACCTGCGGCAAATGGTCAATTACATAGCTGAACTCCTACTCGAGGGCTCAAAGGATGACACAAAGTTGCGGAATAGAAAAAATATTTTGATCTTAGCCCTGACTAGACATGACGATTCTCTCATGCTGTTTCAGGATTTTTGAAACGCTGTAGCAGGTGTTCCAGCATCTTTCTTCCATACTTAATCATACTTCTTTTGAGCTAGATGGTGGAATATCATAGTTTATTTTGCACCCAGGCTTTTATTGGGTCAACTGGCTTAGGATTAACCAACGCTTTCCCTAGGCCAATCGAACCAACCTTTCCTTTTGGCATTTCGTTTCAAACCAAAGTTCGGAAATGAAATCCTTTGGTATATTG ]
[+] EMBL CF323673 [ CGCGGCGGAGCCAAACCTCGCCGCCGGCGACCATGGTGTCGCAGCACGGGATCCTCCTCGCCGTCGCCATCATCTCCGACCACTTCGGCCCCCTCGTATCCAAGGTGTGCCGCTGCCTGCTCCGCCACGGCGCGCTGCCGCTGCAGGAGATCGTCCGCCGCCTCGAGCTCTCGCCGGGGCAGGTGAAGAACTCGCTCCTCGTCCTCATCCAGCACAACTGCGTGCAGGCCTTCAATGCCCCCAGAGGAAATGGTGATAAGACGGTAACGCACTACCTGGCCATCTTCGACAACATCGTGCACAGACAGCGTTTCTCAAAGTTCCTTTCTATCATCCGTGCAGACATCCCAGAGTCAGAAGCGCTGCTTGAAGGATTGCTTCAGAATGGTAGGCTAACATTTGGCCAACTTGTGGAGCGAACAATTTCTAAAGTACCAGAAGGCAGTATCACACCAGCAAGGGAGGAAATACGAATGAACTTCAACAAACTTGTATTTGCACATTATGTGGGAGCGTTGCCCGAAACCTGAACCTTTCTTTGATCCACTTGTAGATGAACAATCTACCTCGTCAGGGAAAC ]
[+] EMBL AK068292 [ TCGCTCCTCGTCCTCATCCAGCACAACTGCGTGCAGGCCTTCAATGCCCCCAGAGGAAATGGTGATAAGACGGTAACGCACTACCTGGCCATCTTCGACAACATCGTGCACAGACAGCGTTTCTCAAAGTTCCTTTCTATCATCCGTGCAGACATCCCAGAGTCAGAAGCGCTGCTTGAAGGATTGCTTCAGAATGGTAGGCTAACATTTGGCCAACTTGTGGAGCGAACAATTTCTAAAGTACCAGAAGGCAGTATCACACCAGCAAGGGAGGAAATACGAATGAACTTCAACAAACTTGTATTTGCACATTATGT GGAGCGTTGCCCGAAACCTGAACCTTTCTTTGATCCACTTGTAGATGAACAATCTACCTCGTCAAGGAAACGTGCTCCAAAAACTGTCGAGATTGCTCTTTCAATTGATAAGAAAGTTGTCAATACTGCAGCTCTTTCTGATGCAGAAAGATTTTCTGAGATCCCATACATCATGGAAGATGCATCCAATGCTAATGATTCTCCACGTTCTTCTATTTCTGGTGCTAAGAGGAAACATAATGCCTTAGAAGGAGATGCAGAGCTCGATTCAACAATTGCAGAGAACGAAGTACTTTGGCGGGCAAATTTTGAGAAATTCACATTCTGTCTAAAGAAGAAGTTTTGTGCAGACCGAAAGAAACCTAAGTTGAAGGTTGGCACACATCCTATCTGGGAAGCATTTTTCGAGGCCAGTTTAATGGAAAGGGACAACAACTCTGTGACATCTCCAATAAATGGTATTATGGAGAGGCTAGGACAGAAGGAAGGAGGTACATCGATGACACTTGATCATATAACAAGAGTTTTGGAGGAGTTGAATTGTAGTCCTTCCTCAGAGGACCCAGATTCATTCATTTTGGATTTAAGCAGAATTGTTGAAGCATCTCGAAATGAGGAGATAGAGTCGCTTGTGAGAAAGAAATACGGGCAAGAAGCTTTTACAATTTTTAGGCTATTGGTCAGAGAACGCGGTCCAGTTGAGACAGATAAAATTATTGACACAACAATTCTTGACAAGCAGATTGTTCATGGAACTTTGTATAAGCTTTGGAAGGACGACTACATCGATACAGAGAGAATCCTTTCTGGAACAGGAACAGGGAACACACAATATTTTGTATGGAGAGTGAAAAATACATTCCGGGAACAGTTCATCGATAATCTATGTCATGCTGCTTTAAACCTGCGGCAAATGGTCAATTACATAGCTGAACTCCTACTCGAGGGCTCAAAGGATGACACAAAGTTGCGGAATAGAAAAAATATTTTGATCTTAGCCCTGACTAGACATGACGATTCTCTCATGCTGTTTCAGGATTTTTGAAACGCTGTAGCAGGTGTTCCAGCATCTTTCTTCCATACTTAATCATACTTCTTTTGAGCTAGATGGTGGAATATCATAGTTTATTTTGCACCCAGGCTTTTATTGGGTCAACTGGCTTAGGATTAACCAACGCTTTCCCTAGGCCAATCGAACCAACCTTTCCTTTTGGCATTTCGTTTCAAACCAAAGTTCGGAAATGAAATCCTTTGGTATATTGGACCCTTGTGAATTTTTGTCTTTTTGTGACTAATTAAATTTTGGTAACGTCA]
consensusID : consensus_6283#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence
[TTAAAAGGGGTCTTTTTGGGAAAGGAAAGGAAAAANAAATTTTTTTGGGGGGGAAAAAANTTCCGGGGAAGNTNTGGAAATTAANTNNAGGGGGTTAAAACCGGGGCAAAGGTNAAANAANAAGNGGANTCCTAATTGGGGGGTNAAAGGGAGNANACAAAGNTGGGGGANAGGAAAAAAAATTTTGATTTTNAGCCCNGGACTANANAAGGANGATTTTTTCATGTGTTTTCAGGATTTTTGAAACGCTGTAGCAGTGTTCCAGCATTNTTTNTTCCAAACTNAATCAAANTTCTTTTGAGCTAGANGGGGAANATCANAGTTTATTTTGCACCCAGGCTTTTATTGGGTCAANNGGCTTAGGATTAACCAACGCTTTCCCTAGGCCAATNGAACCAACCTTTCCTTTNGGCATTTNGTTTCAAACCAAAGTTCGGAAATGAAATCCTTTGGTATATTGGACCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AA753675 [TTAAAAGGGGTCTTTTTGGGAAAGGAAAGGAAAAANAAATTTTTTTGGGGGGGAAAAAANTTCCGGGGAAGNTNTGGAAATTAANTNNAGGGGGTTAAAACCGGGGCAAAGGTNAAANAANAAGNGGANTCCTAATTGGGGGGTNAAAGGGAGNANACAAAGNTGGGGGANAGGAAAAAAAATTTTGATTTTNAGCCCNGGACTANANAAGGANGATTTTTTCATGTGTTTTCAGGATTTTTGAAACGCTGTAGCAGTGTTCCAGCATTNTTTNTTCCAAACTNAATCAAANTTCTTTTGAGCTAGANGGGGAANATCANAGTTTATTTTGCACCCAGGCTTTTATTGGGTCAANNGGCTTAGGATTAACCAACGCTTTCCCTAGGCCAATNGAACCAACCTTTCCTTTNGGCATTTNGTTTCAAACCAAAGTTCGGAAATGAAATCCTTTGGTATATTGGACCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6283#0 CTTCCCGCGAGGGTTTAGGCGCGGCGGAGCCAAACCTCGCCGCCGGCGACCATGGTGTCG 60
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 CAGCACGGGATCCTCCTCGCCGTCGCCATCATCTCCGACCACTTCGGCCCCCTCGTATCC 120
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 AAGGTGTGCCGCTGCCTGCTCCGCCACGGCGCGCTGCCGCTGCAGGAGATCGTCCGCCGC 180
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 CTCGAGCTCTCGCCGGGGCAGGTGAAGAACTCGCTCCTCGTCCTCATCCAGCACAACTGC 240
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 GTGCAGGCCTTCAATGCCCCCAGAGGAAATGGTGATAAGACGGTAACGCACTACCTGGCC 300
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 ATCTTCGACAACATCGTGCACAGACAGCGTTTCTCAAAGTTCCTTTCTATCATCCGTGCA 360
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 GACATCCCAGAGTCAGAAGCGCTGCTTGAAGGATTGCTTCAGAATGGTAGGCTAACATTT 420
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 GGCCAACTTGTGGAGCGAACAATTTCTAAAGTACCAGAAGGCAGTATCACACCAGCAAGG 480
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 GAGGAAATACGAATGAACTTCAACAAACTTGTATTTGCACATTATGTGGAGCGTTGCCCG 540
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 AAACCTGAACCTTTCTTTGATCCACTTGTAGATGAACAATCTACCTCGTCAAGGAAACGT 600
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 GCTCCAAAAACTGTCGAGATTGCTCTTTCAATTGATAAGAAAGTTGTCAATACTGCAGCT 660
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 CTTTCTGATGCAGAAAGATTTTCTGAGATCCCATACATCATGGAAGATGCATCCAATGCT 720
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 AATGATTCTCCACGTTCTTCTATTTCTGGTGCTAAGAGGAAACATAATGCCTTAGAAGGA 780
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 GATGCAGAGCTCGATTCAACAATTGCAGAGAACGAAGTACTTTGGCGGGCAAATTTTGAG 840
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 AAATTCACATTCTGTCTAAAGAAGAAGTTTTGTGCAGACCGAAAGAAACCTAAGTTGAAG 900
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 GTTGGCACACATCCTATCTGGGAAGCATTTTTCGAGGCCAGTTTAATGGAAAGGGACAAC 960
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 AACTCTGTGACATCTCCAATAAATGGTATTATGGAGAGGCTAGGACAGAAGGAAGGAGGT 1020
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 ACATCGATGACACTTGATCATATAACAAGAGTTTTGGAGGAGTTGAATTGTAGTCCTTCC 1080
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 TCAGAGGACCCAGATTCATTCATTTTGGATTTAAGCAGAATTGTTGAAGCATCTCGAAAT 1140
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 GAGGAGATAGAGTCGCTTGTGAGAAAGAAATACGGGCAAGAAGCTTTTACAATTTTTAGG 1200
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 CTATTGGTCAGAGAACGCGGTCCAGTTGAGACAGATAAAATTATTGACACAACAATTCTT 1260
consensus_6283#1 ------------------------------------------------------------
consensus_6283#0 GACAAGCAGATTGTTCATGGAACTTTGTATAAGCTTTGGAAGGACGACTACATCGATACA 1320
consensus_6283#1 ----------------------------------------------------------TT 2
consensus_6283#0 GAGAGAATCCTTTCTGGAACAGGAACAGGGAACACACAATATTTTGTATGGAGAGTGAAA 1380
consensus_6283#1 AAAAGGGGTCTTTTTGGGAAAGGAA-AGGAAAAANA-AATTTTTT---TGGGGGGGAAAA 57
* ** **** *** * ***** *** ** * * *** **** *** * * ***
consensus_6283#0 AATACATTCCGGGAACAGTTCATCGATAATCTATGTCATGCTGCTTTAAACCTGCGGCAA 1440
consensus_6283#1 AAN---TTCCGGGGAAGNTNT---GGAAATTAANTNNAGG--GGGTTAAAACCGGGGCAA 109
** ******* * * * *** * * * * ***** * * *****
consensus_6283#0 ATGGTCAATTACATAGCTGAACTCCTACTCGAGGGCTCAAAGGATGACACAAAGTTGCGG 1500
consensus_6283#1 A-GGTNAAANAANAAGNGGANTCCTAATTGGGGGGTNAAAGGGAGNANACAAAGNTGGGG 168
* *** ** * ** ** * * * * *** ** *** * ****** ** **
consensus_6283#0 AATAG-AAAAAATATTTTGATCTTAG--CCCTGACTAGACATG-ACGATTCTCTCATGCT 1556
consensus_6283#1 GANAGGAAAAAAAATTTTGATTTTNAGCCCNGGACTANANAAGGANGATTTTTTCATGTG 228
* ** ****** ******** ** ** ***** * * * * **** * *****
consensus_6283#0 GTTTCAGGATTTTTGAAACGCTGTAGCAGGTGTTCCAGCAT-CTTTCTTCCATACTTAAT 1615
consensus_6283#1 TTTTCAGGATTTTTGAAACGCTGTAGCAG-TGTTCCAGCATTNTTTNTTCCAAACTNAAT 287
**************************** *********** *** ***** *** ***
consensus_6283#0 CATACTTCTTTTGAGCTAGATGGTGGAATATCATAGTTTATTTTGCACCCAGGCTTTTAT 1675
consensus_6283#1 CAAANTTCTTTTGAGCTAGANGG-GGAANATCANAGTTTATTTTGCACCCAGGCTTTTAT 346
** * *************** ** **** **** **************************
consensus_6283#0 TGGGTCAACTGGCTTAGGATTAACCAACGCTTTCCCTAGGCCAATCGAACCAACCTTTCC 1735
consensus_6283#1 TGGGTCAANNGGCTTAGGATTAACCAACGCTTTCCCTAGGCCAATNGAACCAACCTTTCC 406
******** *********************************** **************
consensus_6283#0 TTTTGGCATTTCGTTTCAAACCAAAGTTCGGAAATGAAATCCTTTGGTATATTGGACCCT 1795
consensus_6283#1 TTTNGGCATTTNGTTTCAAACCAAAGTTCGGAAATGAAATCCTTTGGTATATTGGACCCT 466
*** ******* ************************************************
consensus_6283#0 TGTGAATTTTTGTCTTTTTGTGACTAATTAAATTTTGGTAACGTCA---------- 1841
consensus_6283#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 522
** * ** *** ** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||