These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 844 fasta sequence [TTTTTTTTTTTTTCCCAAGACGGTAATACCGTATTTAAAGTTTAGCACCACACAATTATTTTTTATCAACATTTAAAATGAGTTGCTAAGCACCCCTCAAATAGCTAAGCCAACAAGCACACCGGCCAAATAGTTAAAATAGGGATCGTTTGCCATTTGCCACATGAGCAATAATGGGGGTTGCACATGTACGTTCAGCTTCATCTAGAGATTTTTTTTTCTTCAAATTGTAGCCATTGCGATTGACCTTTGCTGCTATCCATGGCATTAGAGATCTCCTGTAAAACCGTTCACATTGCTAGAGTTTTCTGACACTGTAAATAAAAAAGGCGAGGCACTTCCTCCGTTTTTCGATATCTGATCATCCATAGAAAGTTCAAGGGGATGTTCTATGCTAATAAACCGTCCGCCTTTTCCTCTACGCCTCAATTTTGCTTGCTTTTGGCGAGCCTCAACAAGGATCCTCTTTCGAATTGCTGCTACTTTATCTTCTGATCCAACAATTTTTCGACGTTGTCTCCTTCGGATAATTGCATGGTACTGCTTTGCATTCACATATATAGGCTCATCATCAGCATGTTCTGTAGGTAGTGGTAGCAGTGGAGTACACTTCATACCCTTGGTAGGTATGTGTTCAAGAGGTTGGTTGCA-CTCAGGTTTAGGATGCAAATTTTTAGCTTCTAGATTGACTAGAGATAATTCAGGTGACACTTTCCCAGGACCATCAAGCTTACGTTGATTGCCCTGNNTGCTTTCACCAAAACCCATTGTATCTGTGGGACTTGCAAGCAGGTGCTCTATGAGAGGAATGGATATCCCCTTGTTCTTCTTGAAATCCTTCTGN] [+] EMBL CA762859 [TTTTTTTTTTTTTCCCAAGACGGTAATACCGTATTTAAAGTTTAGCACCACACAATTATTTTTTATCAACATTTAAAATGAGTTGCTAAGCACCCCTCAAATAGCTAAGCCAACAAGCACACCGGCCAAATAGTTAAAATAGGGATCGTTTGCCATTTGCCACATGAGCAATAATGGGGGTTGCACATGTACGTTCAGCTTCATCTAGAGATTTTTTTTTCTTCAAATTGTAGCCATTGCGATTGACCTTTGCTGCTATCCATGGCATTAGAGATCTCCTGTAAAACCGTTCACATTGCTAGAGTTTTCTGACACTGTAAATAAAAAAGGCGAGGCACTTCCTCCGTTTTTCGATATCTGATCATCCATAGAAAGTTCAAGGGGATGTTCTATGCTAATAAACCGTCCGCCTTTTCCTCTACGCCTCAATTTTGCTTGCTTTTGGCGAGCCTCAACAAGGATCCTCTTTCGAATTGCTGCTACTTTATCTTCTGATCCAACAATTTTTCGACGTTGACTCCTTCGGATAATTGCATGGCACTGCTTTGCATTCACATATATAGGCTCATCATCAGCATGTTCTGTAGGTAGTGGCAGCAGTGGAGTACACTCCATACCCTTGGTAAGGATGTGTTCAAGAGGTTGGTTGCACCTCA GTTTAGGAAGCAAA TTTTAGC TCTAGAATGACTA ] [+] EMBL CA762858 [ tttttttttTTTAGCACCACACGATTATTTTTTATCAACATTTAAAATGAGTTGCTAAGCACCCCTCAAATAGCTAAGCCAACAAGCACACCGGCCAAATAGTTAAGATAGGGATCATTTGCCATTTGCCACATGAGCAATAATGTGGGTTGCACATGTACGTTCAGCTTCATCTAGAGATTTTTTTTTCTTCAGATTGTAGCCCTTGCGATTGACCTTTGCTGCTATCCATGGCATTAGAGATCTCCTGTAAAACCGTTCACATTGCTAGAGTTTTCTGACACTGTAGATAAAGAAGGCGAGGCACTTCCTCCGTCTTTCGATATCTGATCATCCATAGAAAGTTCAAGGGGATGTTCTATGCTAATAAACCGTCCGCCTTTTCCTCTACGCCTCAATTTTGCTTGCTTTTGGCGAGCCTCAACAAGGATCCTCTTTCGAATTGCTGCTACTTTATCTTCTGATCCAACAATTTTTCGACGTTGTCTCCTTCGGATAATTGCATGGTACTGCTTTGCATTCACATATATAGGCTCATCATCAGCATGTTCTGTAGGTAGTGGTAGCAGTGGAGTACACTTCATACCCTTGGTAGGTATGTGTTCAAGAGGTTGGTTGCA CTCAGGTTTAGGATGCAAATTTTTAGCTTCTAGATTGACTAGAGATAATTCAGGTGACACTTTCCCAGGACC ] [-] EMBL OSS10634A [ TTCGACGTTGTCT CTTCGGATAATTGCATGGTACTGCTTTGCANTCACATATATAGGCTCATCATCAGCATGTTCTGTAGGTAGTGGTAGCAGTGGAGTACACTTCATACCCTTGGTAGGTATGTGTTCAATAGGTTGGTTGCA CTCAGGTTTAGGATGCAAATTTTTAGCTTCTAGATTGACTAGGGATAANTCAGTTGACACTTTCCCAGGACCATCAAGCTTACGTTGATTGCCCTGNNTGCTTTCACCAAAACCCATTGTATCTGTGGGACTTGCAAGCAGGTGCTCTATGAGAGGAATGGATATCCCCTTGTTCTTCTTGAAATCCTTCTGN] consensusID : consensus_6288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [AATTTTTCGACGTTGTCTCCTTCGGATAATTGCATGGTACTGCTTTGCATTCACATATATAGGCTCATCATCAGCATGTTCTGTAGGTAGTGGTAGCAGTGGAGTACACTTCATACCCTTGGTAGGTATGTGTTCTTTTTTAGAACTTTTAGGGGCNTTNGTNAAGGTGACCCTCTCTCTCCTCTCCTCTTTAATCTTGTGAGTGACGCTCTAGCTGNGNGGTTTGACAGTGCCNNANCTGAAGAGGTTGGTTGCACTCAGGTTTAGGATGCAAANNNTTAGCTTCTAGATTGACTAGAGATAATTCAGTTGACACTTTCCCAGGACCATCAAGCTTACGTTGATTGCCCTGGGTGCTTTCACCAAAACCCATTGTATCTGTGGGACTTGCAAGCAGGTGCTCTATGAGAGGAATGGATATCCCCTTGCTCTTCTTGAAATCCTTCTGTCGGTCCGCCTCC] [-] EMBL CB097037 [AATTTTTCGACGTTGTCTCCTTCGGATAATTGCATGGTACTGCTTTGCATTCACATATATAGGCTCATCATCAGCATGTTCTGTAGGTAGTGGTAGCAGTGGAGTACACTTCATACCCTTGGTAGGTATGTGTTCTTTTTTAGAACTTTTAGGGGCNTTNGTNAAGGTGACCCTCTCTCTCCTCTCCTCTTTAATCTTGTGAGTGACGCTCTAGCTGNGNGGTTTGACAGTGCCNNANCTGAAGAGGTTGGTTGCACTCAGGTTTAGGATGCAAANNNTTAGCTTCTAGATTGACTAGAGATAATTCAGTTGACACTTTCCCAGGACCATCAAGCTTACGTTGATTGCCCTGGGTGCTTTCACCAAAACCCATTGTATCTGTGGGACTTGCAAGCAGGTGCTCTATGAGAGGAATGGATATCCCCTTGCTCTTCTTGAAATCCTTCTGTCGGTCCGCCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6288#0 TTTTTTTTTTTTTCCCAAGACGGTAATACCGTATTTAAAGTTTAGCACCACACAATTATT 60 consensus_6288#1 ------------------------------------------------------------ consensus_6288#0 TTTTATCAACATTTAAAATGAGTTGCTAAGCACCCCTCAAATAGCTAAGCCAACAAGCAC 120 consensus_6288#1 ------------------------------------------------------------ consensus_6288#0 ACCGGCCAAATAGTTAAAATAGGGATCGTTTGCCATTTGCCACATGAGCAATAATGGGGG 180 consensus_6288#1 ------------------------------------------------------------ consensus_6288#0 TTGCACATGTACGTTCAGCTTCATCTAGAGATTTTTTTTTCTTCAAATTGTAGCCATTGC 240 consensus_6288#1 ------------------------------------------------------------ consensus_6288#0 GATTGACCTTTGCTGCTATCCATGGCATTAGAGATCTCCTGTAAAACCGTTCACATTGCT 300 consensus_6288#1 ------------------------------------------------------------ consensus_6288#0 AGAGTTTTCTGACACTGTAAATAAAAAAGGCGAGGCACTTCCTCCGTTTTTCGATATCTG 360 consensus_6288#1 ------------------------------------------------------------ consensus_6288#0 ATCATCCATAGAAAGTTCAAGGGGATGTTCTATGCTAATAAACCGTCCGCCTTTTCCTCT 420 consensus_6288#1 ------------AATTTTTCGACGTTGTCTCCTTCGGATAA-TTGCATGG-TACTGCTTT 46 ** ** * * *** * * **** * * * * ** * consensus_6288#0 ACGCCTCAATTTTGCTTGCTTTTGGCGAGCCTCAACAAGGATCCTCTTTCGAATTGCTGC 480 consensus_6288#1 GCAT-TCACATATATAGGCTCATCATCAGCATGTTCTGTAGGTAGTGGTAGCAGTGGAGT 105 * *** * * *** * *** * * * * * ** * consensus_6288#0 -TACTTTATCTTCTGATCCAACAATTTTTCGACGTTGTCTCCTTCGGATAATTGCATGGT 539 consensus_6288#1 ACACTTCATACCCTTGGTAGGTATGTGTTCTTTTTTAGAACTTTTAGGGGCNTTNGTNAA 165 **** ** ** * * *** ** * ** * * * consensus_6288#0 ACTGCTTTGCATTCACATATATAGGCTCATCATCAGCATGTTCTGTAGGTAGTGGTAGCA 599 consensus_6288#1 GGTGACCCTCTCTCTCCT-------CTCCTCTTTA--ATCTTGTGAGTGACGCTCTAGCT 216 ** * ** * * *** ** * * ** ** ** * * **** consensus_6288#0 GTGGAGTACACTTCATACCCTTGGTAG-GTATGTGTTCAAGAGGTTGGTTGCACTCAGGT 658 consensus_6288#1 GNGNGGT-------------TTGACAGTGCCNNANCTGAAGAGGTTGGTTGCACTCAGGT 263 * * ** *** ** * * ********************** consensus_6288#0 TTAGGATGCAAATTTTTAGCTTCTAGATTGACTAGAGATAATTCAGGTGACACTTTCCCA 718 consensus_6288#1 TTAGGATGCAAANNNTTAGCTTCTAGATTGACTAGAGATAATTCAGTTGACACTTTCCCA 323 ************ ******************************* ************* consensus_6288#0 GGACCATCAAGCTTACGTTGATTGCCCTGNNTGCTTTCACCAAAACCCATTGTATCTGTG 778 consensus_6288#1 GGACCATCAAGCTTACGTTGATTGCCCTGGGTGCTTTCACCAAAACCCATTGTATCTGTG 383 ***************************** ***************************** consensus_6288#0 GGACTTGCAAGCAGGTGCTCTATGAGAGGAATGGATATCCCCTTGTTCTTCTTGAAATCC 838 consensus_6288#1 GGACTTGCAAGCAGGTGCTCTATGAGAGGAATGGATATCCCCTTGCTCTTCTTGAAATCC 443 ********************************************* ************** consensus_6288#0 TTCTGN------------ 844 consensus_6288#1 TTCTGTCGGTCCGCCTCC 461 ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||