cluster # 6290

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Oryza sativa
cluster # 6290 cluster # 6290 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6290#0 length = 853 sequences # 2

consensus_6290#1 length = 783 sequences # 2

consensusID : consensus_6290#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 853
fasta sequence

                              [TCCTCCCCTCTCCCTCGCTGCGTCCTCCACTCTTCTGCTCTAGCTCGAGCTCGACCTCCTCCTCATCCGCCATGGGCGACGACATCGACGCGAGGTACGAGGTCCCCCGCACGGCGGAGTTCATCCGCGCCCGCGCCTACACCAGGGTCGCGCTCCAGTTCCCGGACGAGATGCTCAGGGACGCGGCGGCGGTGGCGCAGGCGCTGCGGCGGGAGCTAGGCGGCGGTGG-GGTAAAGCTGTTCGTGATGGCCGACACGGCGTACAACTCGTGCTGCGTCGACGAGGTGGGCGCGTCCCACATCGATGCCCAGTGCGTCGTCCACTACGGCCACGCCTGCATGAGCCCAACATCCAATTTGCCTGCTTTCTTCGTGTTTGGGAAAACACCATTGGATACCGATGCTTGTGGCCGCTCATTGTTGGAGTGCTCGAGAGAAAGTGATAAACGCATCCTGGTTTTTTATGGATTAGAGTATGCACATGCATTGGATGATCTTAAAGCAGTAGTTGCGGAATTATACAAATCACATTCTCGCAGTGTTGAAGTTCAGTATGCAGATGTTCTCTGTTCAGTTATGAGCCCAAGCTCTGCTGCAGAAGTGGAACACGGTCAATCCGATGGAAGCACTCATAGTGATGATTTATCTATACAAAGTGATGTAGCGACATTTGTGAATAATTGTTGCAACGTGGAAGGATCCACACGCAAGTATAGCCTTGGAGGACTAACATGGTCTACATCCATAGATGATAATATGGAGGACTATTTGTTATATTGGATAGGACAAGATAACTCAGCATTTGCCAACATTGTGCTTACCTTCAATAAATGTGATATAGTTAGGTATGATAC]

[+] EMBL CB677513             [TCCTCCCCTCTCCCTCGCTGCGTCCTCCACTCTTCTGCTCTAGCTCGAGCTCGACCTCCTCCTCATCCGCCATGGGCGACGACATCGACGCGAGGTACGAGGTCCCCCGCACGGCGGAGTTCATCCGCGCCCGCGCCTACACCAGGGTCGCGCTCCAGTTCCCGGACGAGATGCTCAGGGACGCGGCGGCGGTGGCGCAGGCGCTGCGGCGGGAGCTAGGCGGCGGTGG GGTAAAGCTGTTCGTGATGGCCGACACGGCGTACAACTCGTGCTGCGTCGACGAGGTGGGCGCGTCCCACATCGATGCCCAGTGCGTCGTCCACTACGGCCACGCCTGCATGAGCCCAACATCCAATTTGCCTGCTTTCTTCGTGTTTGGGAAAACACCATTGGATACCGATGCTTGTGGCCGCTCATTGTTGGAGTGCTCGAGAGAAAGTGATAAACGCATCCTGGTTTTTTATGGATTAGAGTATGCACATGCATTGGATGATCTTAAAGCAGTAGTTGCGGAATTATACAAATCACATTCTCGCAGTGTTGAAGTTCAGTATGCAGATGTTCTCTGTTCAGTTATGAGCCCAAGCTCTGCTGCAGAAGTGGAACACGGTCAATCCGATGGAAGCACTCATAGTGATGATTTATCTATACAAAGTGATGTAGCGACATTTGTGAATAATTGTTGCAACGTGGAAGGATCCACACGCAAGTATAGCCTTGGAGGACTAACATGGTCTACATCCATAGATGATAATATGGAGGACTATTTGTTATATTGGATAGGACAAGATAACTCAGCATTTGCCAACATTGTGCTTACCTTCAATAAATGTGATATAGTTAGGTATGATAC]
[+] EMBL CB677514             [                                                                                                                                                                                                                             atgtGTGGATGTAAA CTGATCTAGATGGACGACACGGCGTACAACTCGTGCTGCGTCGACGAGGTGGGCGCGTCCCACATCGATGCCCAGTGCGTCGTCCACTACGGCCACGCCTGCATGAGCCCAACATCCAATTTGCCTGCTTTCTTCGTGTTTGGGAAAACACCATTGGATACCGATGCTTGTGGCCGCTCATTGTTGGAGTGCTCGAGAGAAAGTGATAAACGCATCCTGGTTTTTTATGGATTAGAGTATGCACATGCATTGGATGATCTTAAAGCAGTAGTTGCGGAATTATACAAATCACATTCTCGCAGTGTTGAAGTTCAGTATGCAGATGTTCTCTGTTCAGTTATGAGCCCAAGCTCTGCTGCAGAAGTGGAACACGGTCAATCCGATGGAAGCACTCATAGTGATGATTTATCTATACAAAGTGATGTAGCGACATTTGTGAATAATTGTTGCAACGTGGAAAGATCCACACGCAAGTATAGCCTTGGAAGACTA                                                                                                                             ]




>consensus_6290#0
TCCTCCCCTCTCCCTCGCTGCGTCCTCCACTCTTCTGCTCTAGCTCGAGCTCGACCTCCT
CCTCATCCGCCATGGGCGACGACATCGACGCGAGGTACGAGGTCCCCCGCACGGCGGAGT
TCATCCGCGCCCGCGCCTACACCAGGGTCGCGCTCCAGTTCCCGGACGAGATGCTCAGGG
ACGCGGCGGCGGTGGCGCAGGCGCTGCGGCGGGAGCTAGGCGGCGGTGGGGTAAAGCTGT
TCGTGATGGCCGACACGGCGTACAACTCGTGCTGCGTCGACGAGGTGGGCGCGTCCCACA
TCGATGCCCAGTGCGTCGTCCACTACGGCCACGCCTGCATGAGCCCAACATCCAATTTGC
CTGCTTTCTTCGTGTTTGGGAAAACACCATTGGATACCGATGCTTGTGGCCGCTCATTGT
TGGAGTGCTCGAGAGAAAGTGATAAACGCATCCTGGTTTTTTATGGATTAGAGTATGCAC
ATGCATTGGATGATCTTAAAGCAGTAGTTGCGGAATTATACAAATCACATTCTCGCAGTG
TTGAAGTTCAGTATGCAGATGTTCTCTGTTCAGTTATGAGCCCAAGCTCTGCTGCAGAAG
TGGAACACGGTCAATCCGATGGAAGCACTCATAGTGATGATTTATCTATACAAAGTGATG
TAGCGACATTTGTGAATAATTGTTGCAACGTGGAAGGATCCACACGCAAGTATAGCCTTG
GAGGACTAACATGGTCTACATCCATAGATGATAATATGGAGGACTATTTGTTATATTGGA
TAGGACAAGATAACTCAGCATTTGCCAACATTGTGCTTACCTTCAATAAATGTGATATAG
TTAGGTATGATAC

consensusID : consensus_6290#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 783
fasta sequence

                              [TCCTCCCCTCTCCCTCGCTGCGTCCTCCACTCTTCTGCTCTAGCTCGAGCTCGACCTCCTCCTCATCCGCCATGGGCGACGACATCGACGCGAGGTACGAGGTCCCCCGCACGGCGGAGTTCATCCGCGCCCGCGCCTACACCAGGGTCGCGCTCCAGTTCCCGGACGAGATGCTCAGGGACGCGGCGGCGGTGGCGCAGGCGCTGCGGCGGGAGCTAGGCGGCGGTGGGGTGAAGCTGTTCGTGATGGCCGACACGGCGTACAACTCGTGCTGCGTCGACGAGGTGGGCGCGTCCCACATCGACG-CCCAGTGCGTCGTCCACTACGGCCACGCCTGCATGAGCCCAACATCCAATTTGCCTGCTTTCTTCGTGTTTGGGAAAACACCATTGGACCCCGATGCTTGTGGCCGCTCATTGTTGGAGTGCTCGAGAGAAAGTGATAAACGCATCCTGGTATGGTAAACCTATTTCTAATGTTCTGAAAATTATGCTTCAATTCATGGAATAAGCTATAACTCTGATTTGTTATTACCAAAGTACAGCCAAATTATGGCATTACGCTTTAATTTTTCCTCTACACTATAAAATCAAATCAAATGTACCAAAAAAAAAATCTCCTTTGATTTCAGTTATCGTGAAAAAAAAAAGTTAAAAATCATAGGGTAGTTCTTCATACATCATCTTCAATTTTCATGGATTCAAATATTTAGAAGTGAGTGCACTATATTGGTAGTCCTAAAAGCAACCTCAATTGGATCATGAATGAGAACTTGTCGTTTTA]

[+] EMBL CB634958             [TCCTCCCCTCTCCCTCGCTGCGTCCTCCACTCTTCTGCTCTAGCTCGAGCTCGACCTCCTCCTCATCCGCCATGGGCGACGACATCGACGCGAGGTACGAGGTCCCCCGCACGGCGGAGTTCATCCGCGCCCGCGCCTACACCAGGGTCGCGCTCCAGTTCCCGGACGAGATGCTCAGGGACGCGGCGGCGGTGGCGCAGGCGCTGCGGCGGGAGCTAGGCGGCGGTGGGGTGAAGCTGTTCGTGATGGCCGACACGGCGTACAACTCGTGCTGCGTCGACGAGGTGGGCGCGTCCCACATCGACG CCCAGTGCGTCGTCCACTACGGCCACGCCTGCATGAGCCCAACATCCAATTTGCCTGCTTTCTTCGTGTTTGGGAAAACACCATTGGACCCCGATGCTTGTGGCCGCTCATTGTTGGAGTGCTCGAGAGAAAGTGATAAACGCATCCTGGTATGGTAAACCTATTTCTAATGTTCTGAAAATTATGCTTCAATTCATGGAATAAGCTATAACTCTGATTTGTTATTACCAAAGTACAGCCAAATTATGGCATTACGCTTTAATTTTTCCTCTACACTATAAAATCAAATCAAATGTACCAAAAAAAAAATCTCCTTTGATTTCAGTTATCGTGAAAAAAAAAAGTTAAAAATCATAGGGTAGTTCTTCATACATCATCTTCAATTTTCATGGATTCAAATATTTAGAAGTGAGTGCACTATATTGGTAGTCCTAAAAGCAACCTCAATTGGATCATGAATGAGAACTTGTCGTTTTA]
[+] EMBL CF323888             [                                                                                                                                                                                                                                                                             TGCTGCGTCGACGAGGTGGGCGCGTCCCACATCGACGCCCCAGTGCGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]




>consensus_6290#1
TCCTCCCCTCTCCCTCGCTGCGTCCTCCACTCTTCTGCTCTAGCTCGAGCTCGACCTCCT
CCTCATCCGCCATGGGCGACGACATCGACGCGAGGTACGAGGTCCCCCGCACGGCGGAGT
TCATCCGCGCCCGCGCCTACACCAGGGTCGCGCTCCAGTTCCCGGACGAGATGCTCAGGG
ACGCGGCGGCGGTGGCGCAGGCGCTGCGGCGGGAGCTAGGCGGCGGTGGGGTGAAGCTGT
TCGTGATGGCCGACACGGCGTACAACTCGTGCTGCGTCGACGAGGTGGGCGCGTCCCACA
TCGACGCCCAGTGCGTCGTCCACTACGGCCACGCCTGCATGAGCCCAACATCCAATTTGC
CTGCTTTCTTCGTGTTTGGGAAAACACCATTGGACCCCGATGCTTGTGGCCGCTCATTGT
TGGAGTGCTCGAGAGAAAGTGATAAACGCATCCTGGTATGGTAAACCTATTTCTAATGTT
CTGAAAATTATGCTTCAATTCATGGAATAAGCTATAACTCTGATTTGTTATTACCAAAGT
ACAGCCAAATTATGGCATTACGCTTTAATTTTTCCTCTACACTATAAAATCAAATCAAAT
GTACCAAAAAAAAAATCTCCTTTGATTTCAGTTATCGTGAAAAAAAAAAGTTAAAAATCA
TAGGGTAGTTCTTCATACATCATCTTCAATTTTCATGGATTCAAATATTTAGAAGTGAGT
GCACTATATTGGTAGTCCTAAAAGCAACCTCAATTGGATCATGAATGAGAACTTGTCGTT
TTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6290#0      TCCTCCCCTCTCCCTCGCTGCGTCCTCCACTCTTCTGCTCTAGCTCGAGCTCGACCTCCT 60
consensus_6290#1      TCCTCCCCTCTCCCTCGCTGCGTCCTCCACTCTTCTGCTCTAGCTCGAGCTCGACCTCCT 60
                      ************************************************************

consensus_6290#0      CCTCATCCGCCATGGGCGACGACATCGACGCGAGGTACGAGGTCCCCCGCACGGCGGAGT 120
consensus_6290#1      CCTCATCCGCCATGGGCGACGACATCGACGCGAGGTACGAGGTCCCCCGCACGGCGGAGT 120
                      ************************************************************

consensus_6290#0      TCATCCGCGCCCGCGCCTACACCAGGGTCGCGCTCCAGTTCCCGGACGAGATGCTCAGGG 180
consensus_6290#1      TCATCCGCGCCCGCGCCTACACCAGGGTCGCGCTCCAGTTCCCGGACGAGATGCTCAGGG 180
                      ************************************************************

consensus_6290#0      ACGCGGCGGCGGTGGCGCAGGCGCTGCGGCGGGAGCTAGGCGGCGGTGGGGTAAAGCTGT 240
consensus_6290#1      ACGCGGCGGCGGTGGCGCAGGCGCTGCGGCGGGAGCTAGGCGGCGGTGGGGTGAAGCTGT 240
                      **************************************************** *******

consensus_6290#0      TCGTGATGGCCGACACGGCGTACAACTCGTGCTGCGTCGACGAGGTGGGCGCGTCCCACA 300
consensus_6290#1      TCGTGATGGCCGACACGGCGTACAACTCGTGCTGCGTCGACGAGGTGGGCGCGTCCCACA 300
                      ************************************************************

consensus_6290#0      TCGATGCCCAGTGCGTCGTCCACTACGGCCACGCCTGCATGAGCCCAACATCCAATTTGC 360
consensus_6290#1      TCGACGCCCAGTGCGTCGTCCACTACGGCCACGCCTGCATGAGCCCAACATCCAATTTGC 360
                      **** *******************************************************

consensus_6290#0      CTGCTTTCTTCGTGTTTGGGAAAACACCATTGGATACCGATGCTTGTGGCCGCTCATTGT 420
consensus_6290#1      CTGCTTTCTTCGTGTTTGGGAAAACACCATTGGACCCCGATGCTTGTGGCCGCTCATTGT 420
                      **********************************  ************************

consensus_6290#0      TGGAGTGCTCGAGAGAAAGTGATAAACGCATCCTGGTTTTTTATGGATTAGAGTATGCAC 480
consensus_6290#1      TGGAGTGCTCGAGAGAAAGTGATAAACGCATCCTGGTAT------GGTAAACCTATTTCT 474
                      ************************************* *      * * *   ***    

consensus_6290#0      ATGCATTGGATGATCTTAAAGCAGTAGTTGCGGAATTATACAAATCACATTCTCGCAGTG 540
consensus_6290#1      AATGTTCTGAAAATTATGCTTCAATTCATGGAATAAGCTATAACTCTGATT-TGTTATTA 533
                      *    *  **  **  *    ** *   **    *   ** ** **  *** *   * * 

consensus_6290#0      TTGAAGTTCAGTATGCAGATGTTCTCTGTTCAGTTATGAGCCCAAGCTCTGCTGCAGAAG 600
consensus_6290#1      CCAAAGTACAGC---CAAATTATGGCATTACGCTTTAATTTTTCCTCTACACTATAAAAT 590
                         **** ***    ** **  *  *  * *  **           **   **  * ** 

consensus_6290#0      TGGAACACGGTCAATCCGATGGAAGCACTCATAGTGATGATTTATCTATACAAAGTGATG 660
consensus_6290#1      CAAATCAAATGTACCAAAAAAAAAATCTCCTTTGATTTCAGTTATCGTGAAAAAAAAAAG 650
                         * **     *     *   **     * * *   * * *****   * ***   * *

consensus_6290#0      TAGCGACATTTGTGAATAATTGTTGCAACGTGGAAGGATCCACACGCAAGTATAGCCTTG 720
consensus_6290#1      TTA-AAAATCATAGGGTAGTTCTTCATACATC-----ATCTTCA-ATTTTCATGGATTCA 703
                      *    * **    *  ** ** **   ** *      ***  **       ** *  *  

consensus_6290#0      GAGGACTAACATGGTCTACATCCATAGATGATAATATGGAGGACTATTTGTTATATTGGA 780
consensus_6290#1      AATATTTAGAAGTGAGTGCA-CTATAT-TGGTAGTCCTAAAAGCAACCT---CAATTGGA 758
                       *    **  *  *  * ** * ***  ** ** *    *   * *  *     ******

consensus_6290#0      TAGGACAAGATAACTCAGCATTTGCCAACATTGTGCTTACCTTCAATAAATGTGATATAG 840
consensus_6290#1      TCATGAATGAGAACTTGTCGTTTTA----------------------------------- 783
                      *     * ** ****   * ***                                     

consensus_6290#0      TTAGGTATGATAC 853
consensus_6290#1      -------------