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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6291#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1387 fasta sequence
[CCGCCGCCTTCCCGGCCGGCCGCGCGGTTTCCGGCGGCTGGCTCCGGCGGCGGCAAGGCGGCTAGAGGCCGGCGAGGTGGCGGCGCGGGCGGCTAGGGTTTTCTCCCCCTAGTCGCCCGCGTGAGGGCGACGCGAGGGTCACGCAACGGAGGGGGAAAAAAGGACAGTAAACAGCGCAAAACTCTGTATATCTTCAGGAGCTACAAACTGAAAATTGTTGGTGCAAGGCCACAGGTGGCACTCCACAGCTTGAATCTTGGCAAGACATCACTACAGAGCTCAGGAACGCCCTCTCAACATCCTCCGATGCATTTCTCCTCAGCAAGCACATGACATACTCCATCACGGCCGCATCACAGGGCAGTGTGATCCTCCCATCACCGGCGAACCCGAATTCCTCTTGTGACATCCTCAGGAGCTCGCCGAAGACCGTTGTTCCGAGGTACGGCAATGGCACCTTGAACCGCCTCCCGTCTGCCGTGTACATGGTGCAACGGCCCTTGTCTGCAACCGGAGAAGTCGTGCAGCAGGCGTCGTCTTCCCTGGCGGCCGTCGTCTTGACCCTCTGCAGCCTCCTCGCCAGCTGAGCAAGCCTCTTGGAATGTATCATGGCTGGTTCTGGTTGTTCTTTGGTTCTCAGAATCTAAGGGGACAAGGCCATTGGCTTGATGCGTGCAATGGTGTCCCCAACGGGAGGCAGCGAGATTCAGATTAGAATTTTGCTGGGGCCATCACTTGGTGCACTGGGGAAGCAATGGTAGTGGATTAGTAGCTGTTCTATCAGATACATGCTACAGTCTCTGCTGCTGAACTGGGCAGAGGTTTTATGCAACCATCCAAGGTCCAGCCTTTATGGATGTGCTAAATTCACTAACTATTCAGCTCACCTTCCTGTATCAAGATATTTGGAGATAAGCAAGCTGACATCTGAAGACGAAGGTTCGTCGAATCTTCCTGAGCAGATCGATTCAGGGTTCGTTTTCCTGCCTTTTGCTGTGTAGTCACTGCACTTGAAATTGCAATCGCATATGGGCCGTGGTTTGGAGTGCCTTTATTCTTGCACGCAACACAGCTTGCTCGACAGACAGTTTCCATATCTCAGTTTGTAGCAGTTTGTTTGTATCTTGATTTGTGTAGCATCGCACGTGTGACATCTATTGTCGTTGGTTGGGTATATTCCGTACGTTTTCCAATTGGTCTACATCCAGTTGGTGGTATTCGTCAAGCCGTCGGTTTTAGCATGAAAGTTCAGTCTAGTCAGGTTGTTGTCCCTAGTTTTATTGAAGTGACCTGTGTGCAACTTTTTTCAAGGCTGTATTTTGCTATTGCCTGACAATTTGCTTGGTCATCCAGGACAGGGTATCACAATACCAGATGCAAGATGCAC]
[+] EMBL AK064274 [CCGCCGCCTTCCCGGCCGGCCGCGCGGTTTCCGGCGGCTGGCTCCGGCGGCGGCAAGGCGGCTAGAGGCCGGCGAGGTGGCGGCGCGGGCGGCTAGGGTTTTCTCCCCCTAGTCGCCCGCGTGAGGGCGACGCGAGGGTCACGCAACGGAGGGGGAAAAAAGGACAGTAAACAGCGCAAAACTCTGTATATCTTCAGGAGCTACAAACTGAAAATTGTTGGTGCAAGGCCACAGGTGGCACTCCACAGCTTGAATCTTGGCAAGACATCACTACAGAGCTCAGGAACGCCCTCTCAACATCCTCCGATGCATTTCTCCTCAGCAAGCACATGACATACTCCATCACGGCCGCATCACAGGGCAGTGTGATCCTCCCATCACCGGCGAACCCGAATTCCTCTTGTGACATCCTCAGGAGCTCGCCGAAGACCGTTGTTCCGAGGTACGGCAATGGCACCTTGAACCGCCTCCCGTCTGCCGTGTACATGGTGCAACGGCCCTTGTCTGCAACCGGAGAAGTCGTGCAGCAGGCGTCGTCTTCCCTGGCGGCCGTCGTCTTGACCCTCTGCAGCCTCCTCGCCAGCTGAGCAAGCCTCTTGGAATGTATCATGGCTGGTTCTGGTTGTTCTTTGGTTCTCAGAATCTAAGGGGACAAGGCCATTGGCTTGATGCGTGCAATGGTGTCCCCAACGGGAGGCAGCGAGATTCAGATTAGAATTTTGCTGGGGCCATCACTTGGTGCACTGGGGAAGCAATGGTAGTGGATTAGTAGCTGTTCTATCAGATACATGCTACAGTCTCTGCTGCTGAACTGGGCAGAGGTTTTATGCAACCATCCAAGGTCCAGCCTTTATGGATGTGCTAAATTCACTAACTATTCAGCTCACCTTCCTGTATCAAGATATTTGGAGATAAGCAAGCTGACATCTGAAGACGAAGGTTCGTCGAATCTTCCTGAGCAGATCGATTCAGGGTTCGTTTTCCTGCCTTTTGCTGTGTAGTCACTGCACTTGAAATTGCAATCGCATATGGGCCGTGGTTTGGAGTGCCTTTATTCTTGCACGCAACACAGCTTGCTCGACAGACAGTTTCCATATCTCAGTTTGTAGCAGTTTGTTTGTATCTTGATTTGTGTAGCATCGCACGTGTGACATCTATTGTCGTTGGTTGGGTATATTCCGTACGTTTTCCAATTGGTCTACATCCAGTTGGTGGTATTCGTCAAGCCGTCGGTTTTAGCATGAAAGTTCAGTCTAGTCAGGTTGTTGTCCCTAGTTTTATTGAAGTGACCTGTGTGCAACTTTTTTCAAGGCTGTATTTTGCTATTGCCTGACAATTTGCTTGGTCATCCAGGACAGGGTATCACAATACCAGATGCAAGATGCAC]
consensusID : consensus_6291#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 786 fasta sequence
[GTGCAGCAGGCGTCGTCTTCCCTGGCGGCCGTCGTCTTGACCCTCTGCAGCCTCCTCGCCAGCTGAGCAAGCCTCTTGGAATGTATCATGGCTGGTTCTGGTTGTTCTTTGGTTCTCAGAATCTAAGGGGACAAGGCCATTGGCTTGATGCGTGCAATGGTGTCCCCAACGGGAGGCAGCGAGATTCAGATTAGAATTTTGCTGGGGCCATCACTTGGTGCACTGGGGAAGCAATGGTAGTGGATTAGTAGCTGTTCTATCAGATACATGCTACAGTCTCTGCTGCTGAACTGGGCAGAGGTTTTATGCAACCATCCNAGGTCCAGCCTTTATGGATGTGCTAAATTCACTAACTATTCAGCTCACCTTCCTGTATCAAGATATTTGGAGATAAGCA-AGCTGACATCTGAAGACGAAGGTTCG-TCGAATCTTCCTGAGCAGATCGATTCAGGGACAGGGTATCACAATACCAGATGCAAGATGCACTCATGTATCCCAATCAACTTGTAAGTATCATGTACTCATTCCGTCCC-AAATATAAAAACATAAAATTAAATTGGACATTTCTTAATATTATGAATCTGAAAAGTATGTCCCATCTGGTTTTATGTTCTTATGTTTTGGGACGAAGATTGTAGTATAGTAGCGTTACAAAGATGTGCTATCGGCCGGACGCCCATCCGGGTGAGCTTGTTGGCAGCAGCGAGCTCAGCTGATCATGGCCATGGCGCGGGGTTTCTTGTGTTTCTGACAAGTGATCAACAACGTACTCTTGTTTTCTAAAAA]
[+] EMBL CA755157 [GTGCAGCAGGCGTCGTCTTCCCTGGCGGCCGTCGTCTTGACCCTCTGCAGCCTCCTCGCCAGCTGAGCAAGCCTCTTGGAATGTATCATGGCTGGTTCTGGTTGTTCTTTGGTTCTCAGAATCTAAGGGGACAAGGCCATTGGCTTGATGCGTGCAATGGTGTCCCCAACGGGAGGCAGCGAGATTCAGATTAGAATTTTGCTGGGGCCATCACTTGGTGCACTGGGGAAGCAATGGTAGTGGATTAGTAGCTGTTCTATCAGATACATGCTACAGTCTCTGCTGCTGAACTGGGCAGAGGTTTTATGCAACCATCCNAGGTCCAGCCTTTATGGATGTGCTAAATTCACTAACTATTCAGCTCACCTTCCTGTATCAAGATATTTGGAGATAAGCA AGCTGACATCTGAAGACGAAGGTTCG TCGAATCTTCCTGAGCAGATCGATTCAGGGACAGGGTATCACAATACCAGATGCAAGATGCACTCATGTATCCCAATCAACTTGTAAGTATCATGTACTCATTCCGTCCC AAAT TTAAAACATAAAATT AATTGGACA TTCTTAATATTATGAATCTGAAAAGTATGTCC ]
[+] EMBL BI806098 [ GTGCTAAATTCACTAACTGTTCAGCTCACCTTCCTGTATCAAGATATTTGGAGATAAGCACAGCTGACATCTGAAGACGAAGGTTCGTTCGAATCTTCCTGA CAGATCGATTCAGGGACAGGGTATCAC ATACCAGATGCAAGATGCACTCATGTATCCCAATCAACTTGTAAGTATCATGTACTCATTCCGTCCC AAATATAAAAACATAAAATTAAATTGGACATTTCTTAAaaaaaaaa ]
[+] EMBL AU166852 [ CACTAACTATTCAGCTCACCTTCCTGTATCAAGATATTTGGAGATAAGCA AGCTGACATCTGAAGACGAAGGTTCG TCGAATCTTCCTGAGCAGATCGATTCAGGGACAGGGTATCACAATACCAGATGCAAGATGCACTCATGTATCCAAATCAACTTGTAAGTATCATGTACTCATTCCGTCCCAAAATATAAAAACATAAAATTAAATTGGACATTTCTTAATATTATGAATCTGAAAAGTATGTCCCATCTGGTTTTATGTTCTTATGTTTTGGGACGAAGATTGTAGTATAGTAGCGTTACAAAGATGTGCTATCGGCCGGACGCCCATCCGGGTGAGCTTGTTGGCAGCAGCGAGCTCAGCTGATCATGGCCATGGCGCGGGGTTTCTTGTGTTTCTGACAAGTGATCAACAACGTACTCTTGTTTTCTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6291#0 CCGCCGCCTTCCCGGCCGGCCGCGCGGTTTCCGGCGGCTGGCTCCGGCGGCGGCAAGGCG 60
consensus_6291#1 ------------------------------------------------------------
consensus_6291#0 GCTAGAGGCCGGCGAGGTGGCGGCGCGGGCGGCTAGGGTTTTCTCCCCCTAGTCGCCCGC 120
consensus_6291#1 ------------------------------------------------------------
consensus_6291#0 GTGAGGGCGACGCGAGGGTCACGCAACGGAGGGGGAAAAAAGGACAGTAAACAGCGCAAA 180
consensus_6291#1 ------------------------------------------------------------
consensus_6291#0 ACTCTGTATATCTTCAGGAGCTACAAACTGAAAATTGTTGGTGCAAGGCCACAGGTGGCA 240
consensus_6291#1 ------------------------------------------------------------
consensus_6291#0 CTCCACAGCTTGAATCTTGGCAAGACATCACTACAGAGCTCAGGAACGCCCTCTCAACAT 300
consensus_6291#1 ------------------------------------------------------------
consensus_6291#0 CCTCCGATGCATTTCTCCTCAGCAAGCACATGACATACTCCATCACGGCCGCATCACAGG 360
consensus_6291#1 ------------------------------------------------------------
consensus_6291#0 GCAGTGTGATCCTCCCATCACCGGCGAACCCGAATTCCTCTTGTGACATCCTCAGGAGCT 420
consensus_6291#1 ------------------------------------------------------------
consensus_6291#0 CGCCGAAGACCGTTGTTCCGAGGTACGGCAATGGCACCTTGAACCGCCTCCCGTCTGCCG 480
consensus_6291#1 ------------------------------------------------------------
consensus_6291#0 TGTACATGGTGCAACGGCCCTTGTCTGCAACCGGAGAAGTCGTGCAGCAGGCGTCGTCTT 540
consensus_6291#1 -----------------------------------------GTGCAGCAGGCGTCGTCTT 19
*******************
consensus_6291#0 CCCTGGCGGCCGTCGTCTTGACCCTCTGCAGCCTCCTCGCCAGCTGAGCAAGCCTCTTGG 600
consensus_6291#1 CCCTGGCGGCCGTCGTCTTGACCCTCTGCAGCCTCCTCGCCAGCTGAGCAAGCCTCTTGG 79
************************************************************
consensus_6291#0 AATGTATCATGGCTGGTTCTGGTTGTTCTTTGGTTCTCAGAATCTAAGGGGACAAGGCCA 660
consensus_6291#1 AATGTATCATGGCTGGTTCTGGTTGTTCTTTGGTTCTCAGAATCTAAGGGGACAAGGCCA 139
************************************************************
consensus_6291#0 TTGGCTTGATGCGTGCAATGGTGTCCCCAACGGGAGGCAGCGAGATTCAGATTAGAATTT 720
consensus_6291#1 TTGGCTTGATGCGTGCAATGGTGTCCCCAACGGGAGGCAGCGAGATTCAGATTAGAATTT 199
************************************************************
consensus_6291#0 TGCTGGGGCCATCACTTGGTGCACTGGGGAAGCAATGGTAGTGGATTAGTAGCTGTTCTA 780
consensus_6291#1 TGCTGGGGCCATCACTTGGTGCACTGGGGAAGCAATGGTAGTGGATTAGTAGCTGTTCTA 259
************************************************************
consensus_6291#0 TCAGATACATGCTACAGTCTCTGCTGCTGAACTGGGCAGAGGTTTTATGCAACCATCCAA 840
consensus_6291#1 TCAGATACATGCTACAGTCTCTGCTGCTGAACTGGGCAGAGGTTTTATGCAACCATCCNA 319
********************************************************** *
consensus_6291#0 GGTCCAGCCTTTATGGATGTGCTAAATTCACTAACTATTCAGCTCACCTTCCTGTATCAA 900
consensus_6291#1 GGTCCAGCCTTTATGGATGTGCTAAATTCACTAACTATTCAGCTCACCTTCCTGTATCAA 379
************************************************************
consensus_6291#0 GATATTTGGAGATAAGCAAGCTGACATCTGAAGACGAAGGTTCGTCGAATCTTCCTGAGC 960
consensus_6291#1 GATATTTGGAGATAAGCAAGCTGACATCTGAAGACGAAGGTTCGTCGAATCTTCCTGAGC 439
************************************************************
consensus_6291#0 AGATCGATTCAGGGTTCGTTTTCCTGCCTTTTGCTGTGTAGTCACTGCACTTGAA-ATTG 1019
consensus_6291#1 AGATCGATTCAGGGACAGGGTATCA---CAATACCAGATGCAAGATGCACTCATGTATCC 496
************** * * * * * * ****** **
consensus_6291#0 CAATCGCATATGGGCCGTGGTTTGGAGTGCCTTTATTCTTGCACGCAACACAGCTTGCTC 1079
consensus_6291#1 CAATC--AACTTGTAAGTATCATGTACTCATTCCGTCCCAAATATAAAAACATAAAATTA 554
***** * * * ** ** * * * * * ** *** *
consensus_6291#0 GACAGACAGTTTCC--ATATCTCAGTTTGTAGCAGTTTGTTTGTATCTTGATTTGTGTAG 1137
consensus_6291#1 AATTGGACATTTCTTAATATTATGAATCTGAAAAGTATGTCC-CATCTGGTTTTATGT-- 611
* * **** **** * * *** *** **** * *** ***
consensus_6291#0 CATCGCACGTGTGACATCTATTGTCGTTGGTTGGGTATATTCCGTACGTTTTCCAATTGG 1197
consensus_6291#1 --TCTTATGTTTTGGGACGAAGATTGTAGTATAGTAGCGTTACAAAGATGTGCTATCGGC 669
** * ** * * * * ** * * * ** * * * * * * *
consensus_6291#0 TCTACATCCAGTTGGTGGTATTCGTCAAGCCGTCGGTTTTAGCATGAAAGTTCAGTCTAG 1257
consensus_6291#1 CGGACGCCCATCCGG--------GTGAGCTTGTTGGCAGCAGCG----AGCTCAG-CTGA 716
** *** ** ** * ** ** *** ** **** **
consensus_6291#0 TCAGGTTGTTGTCCCTAGTTTTATTGAAGTGACCTGTGTGCAACTTTTTTCAAGGCTGTA 1317
consensus_6291#1 TCATGGCCATGGCGCGGGGTTTCTTGT-GTTTCTGACAAGTGA------TCAACAACGTA 769
*** * ** * * * *** *** ** * * * **** ***
consensus_6291#0 TTTTGCTATTGCCTGACAATTTGCTTGGTCATCCAGGACAGGGTATCACAATACCAGATG 1377
consensus_6291#1 CTCT--TGTTTTCTAAAAA----------------------------------------- 786
* * * ** ** * **
consensus_6291#0 CAAGATGCAC 1387
consensus_6291#1 ----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||