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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6293#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1192 fasta sequence
[ATCCTCGAAAGAAATCGTTGATTCCTCTTTTTTCTTCAATTTGTTTACGTGCAATTCAGTTCTTGGAAATAAAAGGTTGGATTTTTACTCTGAACAAAGCGAAAGGTGTGGCAATGGGTGCCAGCGGAAGGCTGATCTCCATTTACCCAGAGGATCTCACTTTCCTATTTGAGCTAGATAAGCCATGCTATTGCAATCTCAAGGTGGTGAACAACAGCGAGCATCATGTTGCATTTAAGGTCAAGACGACATCACCGAGGAAGTATTTTGTCCGGCCGAACGCGAGCATCATCCAGCCATGGGATTCTTGCACAATAACAATTACGCTCCAGGCGCAGAAAGAGTACCCACCAGATATGCAATGCAAGGATAAATTCTTGATCCAGAGCACCAAGGTAGCTGCCAGTACTGACATGGACGAGATCCCCCCTAACACGTTCAACAAGGAAGTCGATAAGGTGATTGAGGAAATGAAGCTTAAGGTTGTTTATACAGTTCCCAGTGGAAGTTCTGACGACTCTGGTATTACATCTTTAGGCAGCAGGAGCTTCAAATTGGGGTCTGACGATCTCACGATGCTGAAGAATGCAAGCATTGAAAAGATACAGACAATACAACGCCTAAAAGACGAACGAGACACCACCCTGCAGCAAAATCAGCAAATGCAACGTGAATTGGATGTGATCAGGAGGCGTAGAAGCCGCAAAAGCGATGCGGGTTTCTCCTTAACGTTTGCTGCTTTTGCTGGGCTCATAGGTGTCCTGATTGGGCTCTTGATGAGCCTCATCTTCCCTCGCCCACAGGCTGCTGCTTAATAAAATGCCAATTTCACAACCAAGTGATACATGTTCAGCTTAATGCCCAACAATGTGGCCATTATCGATCAAACAATCATAGCTAGGTTAATAATCGAGTCAGCTGCTCTGGGGAGGAAAAATATATGGAAAATTCTACTTTAGTCTCAATTATTCTTTTGTTCTTTGCATTGTAGTTAATATGCGTCACATCAGAAAAGGGTCACAATGTTTCATCAACCCAACTCCCCCTTCCTTTTTTTATTAAAAAAATTGTATTTTCCCTTCTTATGTAATCTTTTTGTACAATTTAGTTTGACATAAACATATATCAGGGAGAAGCTGTATGCATTCACCGATTGGATATAAGGTCATGCTCAGTGAAGGACAACTTCATG]
[+] EMBL AK100377 [ATCCTCGAAAGAAATCGTTGATTCCTCTTTTTTCTTCAATTTGTTTACGTGCAATTCAGTTCTTGGAAATAAAAGGTTGGATTTTTACTCTGAACAAAGCGAAAGGTGTGGCAATGGGTGCCAGCGGAAGGCTGATCTCCATTTACCCAGAGGATCTCACTTTCCTATTTGAGCTAGATAAGCCATGCTATTGCAATCTCAAGGTGGTGAACAACAGCGAGCATCATGTTGCATTTAAGGTCAAGACGACATCACCGAGGAAGTATTTTGTCCGGCCGAACGCGAGCATCATCCAGCCATGGGATTCTTGCACAATAACAATTACGCTCCAGGCGCAGAAAGAGTACCCACCAGATATGCAATGCAAGGATAAATTCTTGATCCAGAGCACCAAGGTAGCTGCCAGTACTGACATGGACGAGATCCCCCCTAACACGTTCAACAAGGAAGTCGATAAGGTGATTGAGGAAATGAAGCTTAAGGTTGTTTATACAGTTCCCAGTGGAAGTTCTGACGACTCTGGTATTACATCTTTAGGCAGCAGGAGCTTCAAATTGGGGTCTGACGATCTCACGATGCTGAAGAATGCAAGCATTGAAAAGATACAGACAATACAACGCCTAAAAGACGAACGAGACACCACCCTGCAGCAAAATCAGCAAATGCAACGTGAATTGGATGTGATCAGGAGGCGTAGAAGCCGCAAAAGCGATGCGGGTTTCTCCTTAACGTTTGCTGCTTTTGCTGGGCTCATAGGTGTCCTGATTGGGCTCTTGATGAGCCTCATCTTCCCTCGCCCACAGGCTGCTGCTTAATAAAATGCCAATTTCACAACCAAGTGATACATGTTCAGCTTAATGCCCAACAATGTGGCCATTATCGATCAAACAATCATAGCTAGGTTAATAATCGAGTCAGCTGCTCTGGGGAGGAAAAATATATGGAAAATTCTACTTTAGTCTCAATTATTCTTTTGTTCTTTGCATTGTAGTTAATATGCGTCACATCAGAAAAGGGTCACAATGTTTCATCAACCCAACTCCCCCTTCCTTTTTTTATTAAAAAAATTGTATTTTCCCTTCTTATGTAATCTTTTTGTACAATTTAGTTTGACATAAACATATATCAGGGAGAAGCTGTATGCATTCACCGATTGGATATAAGGTCATGCTCAGTGAAGGACAACTTCATG]
consensusID : consensus_6293#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[ACGCTCCAGGCGCAGAAAGACTACCCCCCAAGATATGCAATGCAAGGATAAGTTCTTGATTCAGAGCACTAGGGTAGCTGCTAGTACTGACATGGACGAGATTCCTCCTGATACGTTCAACAAGGAAGTTGATAAGGTGATTGAGGAAATAAAGCTTAAGGTTGTTTATACAGTGCCTAGTGGAAGTTCCGACGACTCTGGTATTACATCTTTAGGAAGCAGGAGCTTCAAATCGTTGTCTGACGATTTCACGATGCTGAAGAATGCAAGCATTGAAGTGGTAATGCAACTGATCCTAAAGGCATCTCTCATTTTATCGGGGAACTACACCCTAAATAATATCCCAATAAATATCTCTCCATTGAAGGAAAATTTTTGATTTCCGGACATGTGTTCGGAAATAGAAAACGTCGATCGGAATTTTTTTCGGAAATTTTCAGAAACAAAAACAAATTTGGATTTTTTTTCTCGGAAACAGAATCGAATATGCAAAGGCTACTGTCCGTCGGAAACCAGAATCGGTCGGAAACTTTTTGGAGACGAATTTATTCCTGGAAACAAATTTAGATATTTTTTTCGAGATCAGAAACGGAATATTTTTATATGCTGTTGATTTGTTTCAGCCTTCTCCACTCTTAGATATTCAGATTTTAATGAATATTGAGGTCGTTAGTTCAATGGAAAAAAAAAAAA]
[-] EMBL CA763125 [ACGCTCCAGGCGCAGAAAGACTACCCCCCAAGATATGCAATGCAAGGATAAGTTCTTGATTCAGAGCACTAGGGTAGCTGCTAGTACTGACATGGACGAGATTCCTCCTGATACGTTCAACAAGGAAGTTGATAAGGTGATTGAGGAAATAAAGCTTAAGGTTGTTTATACAGTGCCTAGTGGAAGTTCCGACGACTCTGGTATTACATCTTTAGGAAGCAGGAGCTTCAAATCGTTGTCTGACGATTTCACGATGCTGAAGAATGCAAGCATTGAAGTGGTAATGCAACTGATCCTAAAGGCATCTCTCATTTTATCGGGGAACTACACCCTAAATAATATCCCAATAAATATCTCTCCATTGAAGGAAAATTTTTGATTTCCGGACATGTGTTCGGAAATAGAAAACGTCGATCGGAATTTTTTTCGGAAATTTTCAGAAACAAAAACAAATTTGGATTTTTTTTCTCGGAAACAGAATCGAATATGCAAAGGCTACTGTCCGTCGGAAACCAGAATCGGTCGGAAACTTTTTGGAGACGAATTTATTCCTGGAAACAAATTTAGATATTTTTTTCGAGATCAGAAACGGAATATTTTTATATGCTGTTGATTTGTTTCAGCCTTCTCCACTCTTAGATATTCAGATTTTAATGAATATTGAGGTCGTTAGTTCAATGGAAAAAAAAAAAA]
consensusID : consensus_6293#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[GTGCTGCCCCGTCATTGTCGCCGAGAAGCCAAGAAAAGTTCAATTCAGTTCCTGGAAAGAAAGGCCGGATTTTACTCTGAACGAAGACAACGAAGGGAAAGGTGTGGCAATGGGTGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACCTCACTTTCCTATTTGAGCTGGACAAACCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCGAGCATCATGTNGCATTCAAGGTCAAAACAACATCACCAAGGAAGTATTTCGTCCGGCCGAACGCGAACATCGTCCAGCCATGGGATNCTTGCACAATAACAAGTAAATACATGTTTCCAATNCTTGCACAATAACAAGTAAATACATGTTTCCAGTNTTGCCATTTTCTAGTATGCCAAGCAGTGGTTCTCTTTAGGCTTCTTGTTTCGTCTTGATATTTGGATATCTGCATTCTTGTNTGTGGGTGTAGTTACGCTCCAGGCGCAGAAAGAGTACCCACAAGATATGCAATGCAAGGATAAGTCCTGGATCCAGAGCACTAGGGGTGCTGCCAGTACCGACATGGACGAGATCCCTCCGATACGTCCACCAGGAGGTGATAGGTG]
[+] EMBL CA753612 [GTGCTGCCCCGTCATTGTCGCCGAGAAGCCAAGAAAAGTTCAATTCAGTTCCTGGAAAGAAAGGCCGGATTTTACTCTGAACGAAGACAACGAAGGGAAAGGTGTGGCAATGGGTGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACCTCACTTTCCTATTTGAGCTGGACAAACCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCGAGCATCATGTNGCATTCAAGGTCAAAACAACATCACCAAGGAAGTATTTCGTCCGGCCGAACGCGAACATCGTCCAGCCATGGGATNCTTGCACAATAACAAGTAAATACATGTTTCCAATNCTTGCACAATAACAAGTAAATACATGTTTCCAGTNTTGCCATTTTCTAGTATGCCAAGCAGTGGTTCTCTTTAGGCTTCTTGTTTCGTCTTGATATTTGGATATCTGCATTCTTGTNTGTGGGTGTAGTTACGCTCCAGGCGCAGAAAGAGTACCCACAAGATATGCAATGCAAGGATAAGTCCTGGATCCAGAGCACTAGGGGTGCTGCCAGTACCGACATGGACGAGATCCCTCCGATACGTCCACCAGGAGGTGATAGGTG]
consensusID : consensus_6293#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence
[TCCATTAAATTCTCGTGTGTAGTTGAGCTGGATAAGCGGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCGAGCATCATGCTGCATTCAAGGTCCATGGCCTTCCATTTCATGACCAATATTTTCTAAAACTTGGCGAGAAGGCTTGATGAAAGTTTGTTTCATGTCAAGACGACATTACCGAGGAAGTATTTTGTCCGGCCGAACACGAGCATTGTCCAGCCATGGGATTCTTGCACAATAACAAGTAAATAGTACCTTCGCCGCATAATAAGTTAATCTAATACGAGATGTGACATATCCCAGTACTTGTCCAAATTCATAGTACTAGTATATATCACATCTTGTATTAGATTAATTTATTCTGGGACGGAGGGAATACATGTTCCTAATTTGGCCATTTTATGGTATGCCAAGCCATGGCTCTCTTCAGGCTCCTTGTTTGGTCTTGATATTTGGATATCTGCATTGTTCTTGGGTGATGTAGTTACGCTCCAGGCACATAAATAGTGCCCACCAAATATGCAATGCAAGGA]
[+] EMBL AK070309 [TCCATTAAATTCTCGTGTGTAGTTGAGCTGGATAAGCGGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCGAGCATCATGCTGCATTCAAGGTCCATGGCCTTCCATTTCATGACCAATATTTTCTAAAACTTGGCGAGAAGGCTTGATGAAAGTTTGTTTCATGTCAAGACGACATTACCGAGGAAGTATTTTGTCCGGCCGAACACGAGCATTGTCCAGCCATGGGATTCTTGCACAATAACAAGTAAATAGTACCTTCGCCGCATAATAAGTTAATCTAATACGAGATGTGACATATCCCAGTACTTGTCCAAATTCATAGTACTAGTATATATCACATCTTGTATTAGATTAATTTATTCTGGGACGGAGGGAATACATGTTCCTAATTTGGCCATTTTATGGTATGCCAAGCCATGGCTCTCTTCAGGCTCCTTGTTTGGTCTTGATATTTGGATATCTGCATTGTTCTTGGGTGATGTAGTTACGCTCCAGGCACATAAATAGTGCCCACCAAATATGCAATGCAAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6293#2 ----------------------------------GTGCTGCCCCGTCATTG--TCGCCGA 24
consensus_6293#3 -TCCATTAAATTCTCGTGTGTAGTTGAGCTGGATAAGCGGTGCTATTGCAA--TCTCAAG 57
consensus_6293#0 -------------------ATCCTCGAAAGAAATCGTTGATTCCTCTTTTT--TCTTCAA 39
consensus_6293#1 ACGCTCCAGGCGCAGAAAGACTACCCCCCAAGATATGCAATGCAAGGATAAGTTCTTGAT 60
* **
consensus_6293#2 GAAGCCAAGAAAAGTTCAATTCAGTTCCTGGAAAGAAAGGCCG-GATTT--TACTCTGAA 81
consensus_6293#3 GTGGTGAACAACAGCGAGCATCA--TGCTGCATTCAAGGTCCATGGCCT--TCCATTTCA 113
consensus_6293#0 TTTGTTTAC----GTGCAATTCAGTTCTTGGAAATAAAAGGTTGGATTT--TTACTCTGA 93
consensus_6293#1 TCAGAGCACTAGGGTAGCTGCTAGTACTGACATGGACGAGATTCCTCCTGATACGTTCAA 120
* * * * * * * * *
consensus_6293#2 CGAAGACAACGAAGGGAAAGGTGTGGCAATGGGTGGCGGCGGAACGCTGATCTCCATCTA 141
consensus_6293#3 TGAC--CAATATTTTCTAAAACTTGGCGAGAAGGCTTGATGAAAGTTTGTTTCATGTCAA 171
consensus_6293#0 --------ACAAAGCGAAAGGTGTGGCAATGGGTGCCAGCGGAAGGCTGATCTCCATTTA 145
consensus_6293#1 CAAGGAAGTTGATAAGGTGATTGAGGAAATAAAGCTTAA-GGTTGTTTATACAGTGCCTA 179
** * * * *
consensus_6293#2 CCCCGAGGACC--TCACTTTCCTATTTGAGCTG-GACAAACCGTGCTATTG--CAATCTC 196
consensus_6293#3 GAC-GACATTA--CCGAGGAAGTATTTTGTCCG-GCCGAACACGAGCATTGTCCAGCCAT 227
consensus_6293#0 CCCAGAGGATC--TCACTTTCCTATTTGAGCTA-GATAAGCCATGCTATTG--CAATCTC 200
consensus_6293#1 GTGGAAGTTCCGACGACTCTGGTATTACATCTTTAGGAAGCAGGAGCTTCAAATCGTTGT 239
* **** * * * *
consensus_6293#2 AAGGTGGT-GAACAACAGCGAGCATCATGTNGCATTCAAGGTCAAAACA-ACATCACCAA 254
consensus_6293#3 GGGATTCTTGCACAATAACAAGTAA-ATAGTACCTTCGCCG-CATAATA-AGTTAATCTA 284
consensus_6293#0 AAGGTGGT-GAACAACAGCGAGCATCATGTTGCATTTAAGGTCAAGACG-ACATCACCGA 258
consensus_6293#1 CTGACGATTTCACGATGCTGAAGA--ATGCAAGCATTGAAGTGGTAATGCAACTGATCCT 297
* * ** * * * ** * * * * * * *
consensus_6293#2 GGAAGTATTTCGTCCGGCCGAACGCGAACATCGTCCAGCCATGGGATNCTTGCA--CAAT 312
consensus_6293#3 ATACGAG----ATGTGACATATCCCAGTACTTGTCCAAATTCATAGTACTAGTA--TA-T 337
consensus_6293#0 GGAAGTATTTTGTCCGGCCGAACGCGAGCATCATCCAGCCATGGGATTCTTGCA--CAAT 316
consensus_6293#1 AAAGGCATCT--CTCATTTTATCGGGGAACTACACCCTAAATAATATCCCAATAAATATC 355
* * * * * ** * * * *
consensus_6293#2 AACAAGTAAA-TACATGTTTCCAATNCTTGCACAATAACAAGTAAATACATGTTTCCAGT 371
consensus_6293#3 ATCACATCT--TGTATTAGATTAATTTATTC-TGGGACGGAGGGAATACATGTTCCTAAT 394
consensus_6293#0 AACAATTACGCTCCAGGCGCAGAAAGAGTACCCACCAGATATGCAATGCAAGGATAAATT 376
consensus_6293#1 TCTCCATTGAAGGAAAATTTTTGATTTCCGGACATGTGTTCGGAAATAGAAAACGTCGAT 415
* * * *** * *
consensus_6293#2 NTTGCCATTTTCTAGTA--TGCCAAGCAGTGGTTCTCTTTAGGCTTCTTGTTTCGTCTTG 429
consensus_6293#3 TTGGCCATTTTATGGTA--TGCCAAGCCATGGCTCTCTTCAGGCTCCTTGTTTGGTCTTG 452
consensus_6293#0 CTTGATCCAGAGCACCA--AGGTAGCTGCCAGTACTGACATGGA--CGAGATCCCCCCTA 432
consensus_6293#1 CGGAATTTTTTTCGGAAATTTTCAGAAACAAAAACAAATTTGGATTTTTTTTCTCGGAAA 475
* * * ** *
consensus_6293#2 ATAT-TTGGATATCTGCATTCTT--GTNTGTGGGTGTAGTTACGCTCCAGGC-GCAGAAA 485
consensus_6293#3 ATAT-TTGGATATCTGCATTGTT--CTTGGGTGATGTAGTTACGCTCCAGGC-ACATAAA 508
consensus_6293#0 ACACGTTCAACAAGGAAGTCGATAAGGTGATTGAGGAAATGAAGCTTAAGGTTGTTTATA 492
consensus_6293#1 CAGAATCGAATATGCAAAGGCTACTGTCCGTCG--GAAACCAGAATC--GGTCGGAAACT 531
* * * * * * * * ** *
consensus_6293#2 GAGTACCCACAAGATATGC--AATGCAAGGATAAGTCCTGGATCCAGAGCACTAGGGGTG 543
consensus_6293#3 TAGTGCCCACCAAATATGC--AATGCAAGGA----------------------------- 537
consensus_6293#0 CAGTTCCCAGTGGAAGTTCTGACGACTCTGGTATTACATCTTTAGGCAGCAGGAGCTTCA 552
consensus_6293#1 TTTTGGAGACGAATTTATTCCTGGAAACAAATTTAGATATTTTTTTCGAGATCAGAAACG 591
* *
consensus_6293#2 CTGCCAGTACCGACATGGACGAGATCCCTCCGA-TACGTCCACCAGGAGGTGATAGGTG- 601
consensus_6293#3 ------------------------------------------------------------
consensus_6293#0 AATTGGGGTCTGACGATCTCACGATGCTGAAGAATGCAAGCATTGAAAAGATACAGACAA 612
consensus_6293#1 GAATATTTTTATATGCTGTTGATTTGTTTCAGCCTTCTCCACTCTTAGATATTCAGATTT 651
consensus_6293#2 ------------------------------------------------------------
consensus_6293#3 ------------------------------------------------------------
consensus_6293#0 TACAACGCCTAAAAGACGAACGAGACACCACCCTGCAGCAAAATCAGCAAATGCAACGTG 672
consensus_6293#1 TAATGAATATTGAGGTCGTTAGTTCAATGGAAAAAAAAAAAA------------------ 693
consensus_6293#2 ------------------------------------------------------------
consensus_6293#3 ------------------------------------------------------------
consensus_6293#0 AATTGGATGTGATCAGGAGGCGTAGAAGCCGCAAAAGCGATGCGGGTTTCTCCTTAACGT 732
consensus_6293#1 ------------------------------------------------------------
consensus_6293#2 ------------------------------------------------------------
consensus_6293#3 ------------------------------------------------------------
consensus_6293#0 TTGCTGCTTTTGCTGGGCTCATAGGTGTCCTGATTGGGCTCTTGATGAGCCTCATCTTCC 792
consensus_6293#1 ------------------------------------------------------------
consensus_6293#2 ------------------------------------------------------------
consensus_6293#3 ------------------------------------------------------------
consensus_6293#0 CTCGCCCACAGGCTGCTGCTTAATAAAATGCCAATTTCACAACCAAGTGATACATGTTCA 852
consensus_6293#1 ------------------------------------------------------------
consensus_6293#2 ------------------------------------------------------------
consensus_6293#3 ------------------------------------------------------------
consensus_6293#0 GCTTAATGCCCAACAATGTGGCCATTATCGATCAAACAATCATAGCTAGGTTAATAATCG 912
consensus_6293#1 ------------------------------------------------------------
consensus_6293#2 ------------------------------------------------------------
consensus_6293#3 ------------------------------------------------------------
consensus_6293#0 AGTCAGCTGCTCTGGGGAGGAAAAATATATGGAAAATTCTACTTTAGTCTCAATTATTCT 972
consensus_6293#1 ------------------------------------------------------------
consensus_6293#2 ------------------------------------------------------------
consensus_6293#3 ------------------------------------------------------------
consensus_6293#0 TTTGTTCTTTGCATTGTAGTTAATATGCGTCACATCAGAAAAGGGTCACAATGTTTCATC 1032
consensus_6293#1 ------------------------------------------------------------
consensus_6293#2 ------------------------------------------------------------
consensus_6293#3 ------------------------------------------------------------
consensus_6293#0 AACCCAACTCCCCCTTCCTTTTTTTATTAAAAAAATTGTATTTTCCCTTCTTATGTAATC 1092
consensus_6293#1 ------------------------------------------------------------
consensus_6293#2 ------------------------------------------------------------
consensus_6293#3 ------------------------------------------------------------
consensus_6293#0 TTTTTGTACAATTTAGTTTGACATAAACATATATCAGGGAGAAGCTGTATGCATTCACCG 1152
consensus_6293#1 ------------------------------------------------------------
consensus_6293#2 ----------------------------------------
consensus_6293#3 ----------------------------------------
consensus_6293#0 ATTGGATATAAGGTCATGCTCAGTGAAGGACAACTTCATG 1192
consensus_6293#1 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||